NDHF - BACSU - GREMLIN Contacts

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NDHF - Probable NADH-quinone oxidoreductase subunit 5

UniProt:	P39755	Sequences: MLVSLSLSSLLTLFFIMLMASGISGLLFLHPRVPLSFVRIHIGILALPLLVSLLILANSGVSGNVGPWHLDSLACLMTFFVLAIGFIIQRFSVRYLMGDRSYRKYFTLFTFTTGAASMTWLSGDLRLMVLFWGATLVGLTLLIRLNSAWQVASEAAKISGRLFLLSWFSLFFAMMWLFHATGQWQLSLVVTNESLAGLGEWERTGIQLLIVLAVIIPAAQWPFQRWLVESIVAPTPVSAIMHAGLVNAGGIILTRFSPLFHGGIASIILLLLASISVLIGTGISLVQVDYKRQLVGSTIGQMGFMLIQCALGAYIAAIIHLILHGLFKATLFLQAGSAVGRHEVSTRTNERTSYLWVMAGRILSLVIGVAFWLTAPGDGYHLISALILGWSLSVSWDQLVAFGEGRIGRIAGLTVLGGAALVYFIIHHLFYKWLHTTIFQSVQPPMSAVMIVVCLLLFGSALGTWVARHRSSVFFAVLYLWLVRLGEAKPKSVESHPDYLKQYIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	505 (444)
Sequences:	20234 (12575)
Seq/√Len:	596.8

ECOLI - HYFB NUOL HYCC HYFD HYFF NUOM NUON
BACSU - NDHF MRPA MRPD
HALSA - Q9HRL3 Q9HRS9 Q9HRL2 Q9HRT0 Q9HRL1 Q9HRS8
SULSO - Q980G8 Q97ZA6 Q97ZA9 Q980G9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
71_D	255_R	4.966	1.00
118_M	131_F	4.530	1.00
330_T	368_G	4.490	1.00
185_Q	188_L	4.024	1.00
78_T	121_L	3.739	1.00
144_R	156_A	3.723	1.00
158_I	229_E	3.286	1.00
323_L	378_D	3.264	1.00
289_D	347_R	3.162	1.00
320_H	382_L	3.105	1.00
85_G	113_T	3.104	1.00
183_Q	188_L	3.093	1.00
277_V	414_T	2.974	1.00
288_V	350_E	2.685	1.00
81_V	120_W	2.664	1.00
294_L	335_A	2.623	1.00
346_T	351_R	2.613	1.00
273_A	310_A	2.609	1.00
115_A	134_A	2.587	1.00
173_A	209_L	2.525	1.00
78_T	117_S	2.511	1.00
366_V	426_I	2.473	1.00
220_Q	306_L	2.462	1.00
18_L	114_G	2.411	1.00
452_V	456_L	2.386	1.00
462_L	466_V	2.380	1.00
348_T	351_R	2.329	1.00
92_S	105_Y	2.296	1.00
285_L	420_A	2.230	1.00
69_H	123_G	2.226	1.00
293_Q	349_N	2.176	1.00
82_L	117_S	2.142	1.00
451_I	455_L	2.033	1.00
307_I	411_A	2.018	1.00
246_V	298_T	1.973	1.00
451_I	454_C	1.955	1.00
308_Q	386_L	1.944	1.00
359_A	362_I	1.920	1.00
278_L	414_T	1.907	1.00
14_F	17_M	1.891	1.00
459_G	463_G	1.882	1.00
188_L	191_T	1.874	1.00
215_I	220_Q	1.870	1.00
267_I	271_L	1.865	1.00
297_S	421_L	1.841	1.00
281_T	300_G	1.818	1.00
71_D	74_A	1.798	1.00
31_P	34_P	1.796	1.00
460_S	464_T	1.770	1.00
290_Y	425_I	1.766	1.00
288_V	348_T	1.759	1.00
447_S	451_I	1.751	1.00
319_I	382_L	1.736	1.00
270_L	310_A	1.733	1.00
316_A	389_G	1.721	1.00
48_P	52_S	1.721	1.00
387_I	411_A	1.709	1.00
465_W	468_R	1.700	1.00
151_V	232_V	1.695	1.00
219_A	227_L	1.695	1.00
454_C	458_F	1.688	1.00
80_F	325_G	1.686	1.00
424_F	428_H	1.681	1.00
464_T	468_R	1.681	1.00
176_W	206_I	1.679	1.00
128_M	252_I	1.661	1.00
125_L	189_V	1.659	1.00
211_V	215_I	1.641	1.00
405_G	409_R	1.635	1.00
287_Q	292_R	1.627	1.00
125_L	256_F	1.627	1.00
20_A	42_I	1.616	1.00
274_S	410_I	1.612	1.00
456_L	459_G	1.592	1.00
41_H	45_L	1.591	1.00
101_S	104_K	1.570	1.00
123_G	187_S	1.565	1.00
76_L	322_I	1.555	1.00
254_T	309_C	1.551	1.00
446_M	449_V	1.548	1.00
180_A	206_I	1.541	1.00
122_S	127_L	1.534	1.00
74_A	251_I	1.516	1.00
264_I	267_I	1.513	1.00
456_L	460_S	1.512	1.00
269_L	310_A	1.505	1.00
108_L	141_L	1.481	1.00
220_Q	272_L	1.472	1.00
221_W	275_I	1.470	1.00
188_L	192_N	1.464	1.00
35_L	39_R	1.463	1.00
365_L	368_G	1.446	1.00
214_V	252_I	1.445	1.00
459_G	464_T	1.444	1.00
89_Q	106_F	1.439	1.00
309_C	317_A	1.431	1.00
281_T	414_T	1.427	1.00
390_W	408_G	1.418	1.00
311_L	390_W	1.411	1.00
43_G	47_L	1.399	1.00
69_H	72_S	1.397	1.00
201_W	205_G	1.387	1.00
89_Q	109_F	1.380	1.00
270_L	407_I	1.370	1.00
388_L	392_L	1.370	1.00
211_V	269_L	1.369	1.00
34_P	37_F	1.363	1.00
124_D	184_W	1.361	1.00
25_G	28_F	1.361	1.00
253_L	306_L	1.360	1.00
14_F	114_G	1.358	1.00
305_M	317_A	1.352	1.00
446_M	451_I	1.350	1.00
460_S	463_G	1.350	1.00
449_V	453_V	1.340	1.00
128_M	186_L	1.334	1.00
178_F	184_W	1.330	1.00
173_A	213_A	1.328	1.00
142_L	237_V	1.326	1.00
449_V	452_V	1.318	1.00
455_L	459_G	1.310	1.00
46_A	49_L	1.309	1.00
441_S	444_P	1.308	1.00
124_D	185_Q	1.306	1.00
457_L	461_A	1.305	1.00
76_L	318_I	1.298	1.00
365_L	425_I	1.297	1.00
242_H	246_V	1.294	1.00
91_F	333_L	1.294	1.00
254_T	317_A	1.291	1.00
448_A	451_I	1.288	1.00
175_M	179_H	1.287	1.00
38_V	42_I	1.277	1.00
229_E	292_R	1.277	1.00
149_W	152_A	1.277	1.00
162_L	225_R	1.273	1.00
47_L	51_V	1.270	1.00
155_A	232_V	1.267	1.00
308_Q	313_A	1.264	1.00
459_G	462_L	1.262	1.00
462_L	465_W	1.262	1.00
266_S	270_L	1.259	1.00
327_F	370_A	1.255	1.00
67_P	123_G	1.254	1.00
84_I	325_G	1.249	1.00
459_G	466_V	1.249	1.00
446_M	450_M	1.241	1.00
173_A	210_I	1.240	1.00
448_A	452_V	1.231	1.00
173_A	206_I	1.231	1.00
308_Q	317_A	1.224	1.00
313_A	389_G	1.214	1.00
84_I	329_A	1.214	1.00
44_I	48_P	1.209	1.00
363_L	366_V	1.203	1.00
307_I	390_W	1.199	1.00
70_L	121_L	1.199	1.00
170_L	213_A	1.197	1.00
463_G	466_V	1.191	1.00
174_M	210_I	1.180	1.00
391_S	408_G	1.170	1.00
44_I	86_F	1.166	1.00
50_L	82_L	1.163	1.00
458_F	462_L	1.161	1.00
119_T	248_A	1.160	1.00
126_R	184_W	1.155	1.00
176_W	202_E	1.153	1.00
215_I	272_L	1.151	1.00
331_L	368_G	1.147	1.00
273_A	303_G	1.145	1.00
129_V	171_F	1.141	1.00
258_P	261_H	1.138	1.00
36_S	40_I	1.135	1.00
112_T	116_A	1.132	1.00
154_E	158_I	1.131	1.00
12_T	16_I	1.131	1.00
339_V	347_R	1.128	1.00
149_W	232_V	1.124	1.00
316_A	385_A	1.114	1.00
243_A	247_N	1.108	1.00
349_N	429_L	1.107	1.00
271_L	275_I	1.103	1.00
35_L	38_V	1.098	1.00
77_M	321_L	1.097	1.00
279_I	283_I	1.094	1.00
300_G	418_G	1.094	1.00
451_I	459_G	1.088	1.00
247_N	251_I	1.087	1.00
15_F	18_L	1.080	1.00
324_H	328_K	1.078	1.00
123_G	185_Q	1.077	1.00
11_L	14_F	1.076	1.00
366_V	430_F	1.072	1.00
29_L	32_R	1.071	1.00
82_L	86_F	1.068	1.00
28_F	31_P	1.065	1.00
74_A	255_R	1.058	1.00
42_I	46_A	1.057	1.00
406_R	409_R	1.055	1.00
125_L	174_M	1.053	1.00
47_L	83_A	1.052	1.00
34_P	39_R	1.051	1.00
166_S	216_I	1.045	1.00
323_L	382_L	1.045	1.00
371_F	422_V	1.045	1.00
73_L	254_T	1.039	1.00
16_I	20_A	1.035	1.00
451_I	456_L	1.035	1.00
187_S	191_T	1.029	1.00
180_A	202_E	1.025	1.00
33_V	36_S	1.025	1.00
81_V	113_T	1.025	1.00
32_R	36_S	1.018	1.00
451_I	464_T	1.012	1.00
211_V	253_L	1.009	1.00
445_P	448_A	1.009	1.00
418_G	421_L	1.004	1.00
170_L	174_M	1.004	1.00
231_I	242_H	1.001	1.00
216_I	223_F	1.001	1.00
228_V	296_G	0.996	1.00
453_V	457_L	0.996	1.00
456_L	464_T	0.993	1.00
369_V	374_T	0.989	1.00
21_S	25_G	0.988	1.00
385_A	388_L	0.984	1.00
273_A	307_I	0.983	1.00
362_I	444_P	0.981	1.00
280_G	303_G	0.978	1.00
326_L	458_F	0.977	1.00
91_F	336_G	0.975	1.00
84_I	243_A	0.971	1.00
146_N	149_W	0.968	1.00
110_T	114_G	0.967	1.00
43_G	46_A	0.967	1.00
178_F	181_T	0.967	1.00
70_L	75_C	0.966	1.00
83_A	87_I	0.966	1.00
231_I	246_V	0.966	1.00
181_T	189_V	0.965	1.00
334_Q	365_L	0.963	1.00
221_W	279_I	0.962	1.00
206_I	210_I	0.956	1.00
17_M	20_A	0.955	1.00
452_V	459_G	0.954	1.00
445_P	451_I	0.952	1.00
239_A	333_L	0.946	1.00
143_I	230_S	0.946	1.00
204_T	265_A	0.945	1.00
86_F	90_R	0.944	1.00
139_L	245_L	0.943	1.00
301_Q	320_H	0.943	1.00
409_R	413_L	0.937	1.00
45_L	49_L	0.936	1.00
109_F	240_I	0.932	1.00
450_M	454_C	0.929	1.00
422_V	425_I	0.925	1.00
55_I	58_N	0.925	1.00
462_L	469_H	0.922	1.00
35_L	50_L	0.918	1.00
73_L	318_I	0.915	1.00
282_G	417_G	0.913	1.00
47_L	50_L	0.913	1.00
301_Q	421_L	0.912	1.00
452_V	460_S	0.910	1.00
353_S	435_H	0.910	1.00
153_S	156_A	0.909	1.00
308_Q	316_A	0.909	1.00
301_Q	418_G	0.907	1.00
177_L	206_I	0.904	1.00
290_Y	335_A	0.903	1.00
36_S	43_G	0.902	1.00
36_S	39_R	0.902	1.00
246_V	251_I	0.901	1.00
199_G	203_R	0.900	1.00
281_T	421_L	0.899	1.00
319_I	323_L	0.897	1.00
361_R	364_S	0.896	1.00
26_L	29_L	0.894	1.00
111_F	138_G	0.894	1.00
456_L	463_G	0.894	1.00
183_Q	186_L	0.893	1.00
298_T	324_H	0.893	1.00
68_W	121_L	0.892	1.00
267_I	270_L	0.890	1.00
38_V	49_L	0.888	1.00
36_S	48_P	0.887	1.00
201_W	204_T	0.877	1.00
150_Q	154_E	0.876	1.00
235_T	291_K	0.876	1.00
169_S	212_L	0.875	1.00
394_V	404_E	0.875	1.00
19_M	23_I	0.873	1.00
274_S	407_I	0.870	1.00
289_D	348_T	0.868	1.00
238_S	242_H	0.868	1.00
338_A	355_L	0.867	1.00
363_L	367_I	0.867	1.00
461_A	464_T	0.864	1.00
183_Q	189_V	0.864	1.00
218_A	250_G	0.863	1.00
39_R	46_A	0.859	1.00
364_S	368_G	0.857	1.00
242_H	298_T	0.856	1.00
250_G	305_M	0.856	1.00
129_V	133_G	0.855	1.00
85_G	109_F	0.854	1.00
204_T	264_I	0.853	1.00
270_L	273_A	0.853	1.00
42_I	45_L	0.852	1.00
281_T	417_G	0.852	1.00
305_M	321_L	0.852	1.00
164_L	167_W	0.851	1.00
320_H	327_F	0.850	1.00
365_L	430_F	0.849	1.00
284_S	421_L	0.848	1.00
74_A	78_T	0.847	1.00
49_L	52_S	0.847	1.00
152_A	232_V	0.846	1.00
384_S	388_L	0.843	1.00
115_A	138_G	0.840	1.00
36_S	50_L	0.839	1.00
41_H	48_P	0.838	1.00
353_S	428_H	0.838	1.00
112_T	139_L	0.838	1.00
39_R	50_L	0.838	1.00
176_W	180_A	0.838	1.00
447_S	462_L	0.837	1.00
34_P	42_I	0.832	1.00
197_G	200_E	0.832	1.00
414_T	417_G	0.831	1.00
208_L	212_L	0.831	1.00
387_I	408_G	0.831	1.00
337_S	362_I	0.830	1.00
14_F	29_L	0.824	1.00
94_R	97_M	0.820	1.00
304_F	386_L	0.819	1.00
115_A	131_F	0.817	1.00
186_L	190_V	0.815	1.00
14_F	26_L	0.813	1.00
22_G	25_G	0.812	1.00
64_N	126_R	0.812	1.00
234_P	242_H	0.810	1.00
34_P	38_V	0.804	1.00
129_V	174_M	0.803	1.00
290_Y	352_T	0.801	1.00
353_S	432_K	0.801	1.00
46_A	50_L	0.800	1.00
39_R	42_I	0.800	1.00
117_S	121_L	0.799	1.00
349_N	428_H	0.798	1.00
246_V	250_G	0.797	1.00
277_V	303_G	0.795	1.00
79_F	83_A	0.794	1.00
204_T	208_L	0.793	1.00
28_F	103_R	0.793	1.00
30_H	33_V	0.793	1.00
169_S	209_L	0.792	1.00
45_L	48_P	0.792	1.00
55_I	65_V	0.789	1.00
426_I	431_Y	0.787	1.00
205_G	209_L	0.786	1.00
275_I	279_I	0.783	1.00
253_L	309_C	0.783	1.00
461_A	465_W	0.783	1.00
281_T	297_S	0.780	1.00
32_R	37_F	0.780	1.00
132_W	170_L	0.778	1.00
36_S	41_H	0.777	1.00
293_Q	425_I	0.776	1.00
370_A	377_G	0.776	1.00
373_L	383_I	0.776	1.00
238_S	246_V	0.774	1.00
140_T	156_A	0.772	1.00
280_G	283_I	0.772	1.00
363_L	430_F	0.771	1.00
327_F	379_G	0.771	1.00
177_L	189_V	0.771	1.00
36_S	46_A	0.770	1.00
67_P	185_Q	0.769	1.00
80_F	322_I	0.767	1.00
47_L	82_L	0.767	1.00
88_I	333_L	0.767	1.00
39_R	43_G	0.766	1.00
58_N	63_G	0.766	1.00
13_L	25_G	0.766	1.00
274_S	307_I	0.762	1.00
29_L	33_V	0.760	1.00
423_Y	427_H	0.757	1.00
452_V	463_G	0.756	1.00
37_F	41_H	0.755	1.00
184_W	188_L	0.755	1.00
280_G	300_G	0.755	1.00
135_T	245_L	0.754	1.00
273_A	306_L	0.754	1.00
43_G	49_L	0.753	1.00
452_V	455_L	0.753	1.00
140_T	163_F	0.753	1.00
437_T	440_Q	0.752	1.00
357_V	360_G	0.752	1.00
367_I	456_L	0.751	1.00
294_L	331_L	0.750	1.00
311_L	393_S	0.749	1.00
455_L	464_T	0.749	1.00
49_L	53_L	0.749	1.00
419_A	423_Y	0.746	1.00
116_A	135_T	0.745	1.00
42_I	49_L	0.740	1.00
81_V	116_A	0.738	1.00
200_E	204_T	0.735	1.00
27_L	30_H	0.735	1.00
277_V	307_I	0.734	1.00
452_V	464_T	0.734	1.00
32_R	35_L	0.733	1.00
287_Q	296_G	0.732	1.00
17_M	21_S	0.731	1.00
270_L	274_S	0.729	1.00
251_I	255_R	0.728	1.00
297_S	324_H	0.728	1.00
346_T	352_T	0.727	1.00
36_S	47_L	0.727	1.00
304_F	414_T	0.727	1.00
20_A	24_S	0.726	1.00
358_M	434_L	0.723	1.00
435_H	438_I	0.721	1.00
46_A	53_L	0.721	1.00
455_L	458_F	0.720	1.00
416_L	420_A	0.720	1.00
301_Q	328_K	0.719	1.00
377_G	381_H	0.716	1.00
36_S	53_L	0.715	1.00
105_Y	236_P	0.713	1.00
445_P	452_V	0.713	1.00
35_L	49_L	0.712	1.00
250_G	306_L	0.712	1.00
238_S	241_M	0.711	1.00
207_Q	265_A	0.709	1.00
370_A	379_G	0.709	1.00
270_L	307_I	0.707	1.00
235_T	336_G	0.707	1.00
394_V	405_G	0.706	1.00
116_A	245_L	0.706	1.00
393_S	404_E	0.706	1.00
12_T	15_F	0.704	1.00
250_G	321_L	0.702	1.00
199_G	202_E	0.700	1.00
254_T	314_Y	0.700	1.00
451_I	460_S	0.698	1.00
447_S	455_L	0.697	1.00
124_D	127_L	0.696	1.00
466_V	469_H	0.694	1.00
30_H	34_P	0.693	1.00
57_A	60_G	0.693	1.00
40_I	44_I	0.691	1.00
190_V	258_P	0.689	1.00
200_E	203_R	0.689	1.00
18_L	22_G	0.687	1.00
103_R	107_T	0.687	1.00
13_L	17_M	0.685	1.00
34_P	41_H	0.680	1.00
67_P	124_D	0.675	1.00
123_G	127_L	0.673	1.00
135_T	248_A	0.673	1.00
69_H	187_S	0.672	1.00
373_L	377_G	0.670	1.00
268_I	271_L	0.668	1.00
116_A	244_G	0.667	1.00
18_L	21_S	0.667	1.00
242_H	324_H	0.667	1.00
70_L	74_A	0.665	1.00
364_S	456_L	0.665	1.00
231_I	238_S	0.664	1.00
256_F	259_L	0.663	1.00
40_I	43_G	0.663	1.00
344_V	352_T	0.660	1.00
33_V	37_F	0.660	1.00
21_S	111_F	0.660	1.00
12_T	26_L	0.659	1.00
43_G	50_L	0.658	1.00
372_W	419_A	0.657	1.00
244_G	247_N	0.655	1.00
448_A	462_L	0.655	1.00
35_L	42_I	0.655	1.00
73_L	77_M	0.653	1.00
38_V	46_A	0.652	1.00
387_I	415_V	0.649	1.00
120_W	251_I	0.649	1.00
36_S	45_L	0.649	1.00
13_L	16_I	0.648	1.00
37_F	48_P	0.648	1.00
37_F	45_L	0.644	1.00
278_L	282_G	0.642	1.00
297_S	301_Q	0.642	1.00
283_I	296_G	0.639	1.00
14_F	68_W	0.638	1.00
22_G	26_L	0.638	1.00
273_A	277_V	0.637	1.00
87_I	454_C	0.635	1.00
84_I	240_I	0.635	1.00
57_A	65_V	0.631	1.00
102_Y	106_F	0.630	1.00
35_L	46_A	0.629	1.00
30_H	35_L	0.627	1.00
15_F	29_L	0.627	1.00
14_F	121_L	0.626	1.00
177_L	210_I	0.626	1.00
14_F	22_G	0.626	1.00
11_L	54_L	0.624	1.00
77_M	251_I	0.623	1.00
42_I	48_P	0.623	1.00
37_F	46_A	0.622	1.00
11_L	66_G	0.620	1.00
26_L	30_H	0.620	1.00
41_H	44_I	0.618	1.00
410_I	414_T	0.617	1.00
313_A	317_A	0.617	1.00
14_F	28_F	0.617	1.00
75_C	79_F	0.616	1.00
426_I	430_F	0.616	1.00
125_L	177_L	0.613	1.00
451_I	462_L	0.612	1.00
334_Q	364_S	0.611	1.00
297_S	328_K	0.611	1.00
228_V	299_I	0.610	1.00
231_I	298_T	0.610	1.00
20_A	25_G	0.608	1.00
38_V	48_P	0.608	1.00
189_V	192_N	0.608	1.00
157_K	161_R	0.607	1.00
171_F	175_M	0.606	1.00
281_T	418_G	0.604	1.00
151_V	154_E	0.602	1.00
451_I	463_G	0.602	1.00
205_G	208_L	0.601	1.00
20_A	23_I	0.601	1.00
82_L	113_T	0.600	1.00
79_F	82_L	0.600	1.00
225_R	228_V	0.599	1.00
35_L	45_L	0.597	1.00
445_P	449_V	0.596	1.00
112_T	240_I	0.596	1.00
129_V	167_W	0.596	1.00
367_I	370_A	0.595	1.00
457_L	460_S	0.595	1.00
235_T	238_S	0.594	1.00
132_W	248_A	0.592	1.00
232_V	289_D	0.591	1.00
60_G	63_G	0.590	1.00
278_L	410_I	0.590	1.00
203_R	206_I	0.588	1.00
37_F	40_I	0.588	1.00
207_Q	211_V	0.588	1.00
35_L	52_S	0.587	1.00
461_A	468_R	0.586	1.00
250_G	302_M	0.586	1.00
363_L	368_G	0.586	1.00
235_T	242_H	0.585	1.00
373_L	379_G	0.585	1.00
54_L	57_A	0.584	1.00
81_V	117_S	0.583	1.00
24_S	28_F	0.582	1.00
88_I	109_F	0.582	1.00
367_I	460_S	0.578	1.00
112_T	245_L	0.577	1.00
242_H	328_K	0.576	1.00
50_L	53_L	0.576	1.00
387_I	412_G	0.575	1.00
287_Q	293_Q	0.575	1.00
238_S	324_H	0.575	1.00
456_L	462_L	0.572	1.00
413_L	417_G	0.572	1.00
17_M	25_G	0.572	1.00
88_I	239_A	0.570	1.00
234_P	291_K	0.570	1.00
232_V	292_R	0.570	1.00
21_S	107_T	0.568	1.00
274_S	278_L	0.567	1.00
334_Q	452_V	0.564	1.00
207_Q	260_F	0.563	1.00
209_L	213_A	0.563	1.00
464_T	467_A	0.562	1.00
301_Q	304_F	0.562	1.00
25_G	107_T	0.562	1.00
227_L	246_V	0.561	1.00
133_G	217_P	0.559	1.00
38_V	50_L	0.559	1.00
277_V	304_F	0.558	0.99
375_A	380_Y	0.558	0.99
349_N	425_I	0.557	0.99
14_F	21_S	0.556	0.99
34_P	48_P	0.555	0.99
88_I	236_P	0.553	0.99
37_F	49_L	0.551	0.99
327_F	371_F	0.548	0.99
40_I	46_A	0.548	0.99
105_Y	237_V	0.547	0.99
343_E	359_A	0.546	0.99
108_L	138_G	0.545	0.99
166_S	213_A	0.545	0.99
128_M	170_L	0.545	0.99
15_F	26_L	0.545	0.99
13_L	30_H	0.545	0.99
13_L	28_F	0.544	0.99
87_I	329_A	0.544	0.99
25_G	30_H	0.543	0.99
38_V	41_H	0.543	0.99
15_F	30_H	0.543	0.99
227_L	230_S	0.542	0.99
143_I	241_M	0.540	0.99
125_L	186_L	0.539	0.99
356_W	430_F	0.539	0.99
455_L	462_L	0.539	0.99
58_N	61_V	0.537	0.99
436_T	439_F	0.537	0.99
38_V	45_L	0.537	0.99
383_I	415_V	0.536	0.99
463_G	468_R	0.533	0.99
85_G	240_I	0.533	0.99
290_Y	429_L	0.532	0.99
111_F	115_A	0.532	0.99
36_S	42_I	0.532	0.99
95_Y	236_P	0.532	0.99
234_P	237_V	0.532	0.99
324_H	332_F	0.532	0.99
237_V	242_H	0.529	0.99
237_V	240_I	0.529	0.99
282_G	286_V	0.529	0.99
243_A	246_V	0.528	0.99
39_R	45_L	0.527	0.99
454_C	457_L	0.527	0.99
308_Q	389_G	0.527	0.99
29_L	34_P	0.526	0.99
320_H	323_L	0.526	0.99
176_W	205_G	0.526	0.99
242_H	251_I	0.525	0.99
139_L	143_I	0.524	0.99
15_F	19_M	0.524	0.99
247_N	302_M	0.522	0.99
162_L	216_I	0.520	0.99
242_H	247_N	0.518	0.99
319_I	385_A	0.518	0.99
372_W	377_G	0.517	0.99
456_L	466_V	0.517	0.99
38_V	53_L	0.516	0.99
31_P	40_I	0.515	0.99
420_A	424_F	0.515	0.99
211_V	265_A	0.515	0.99
36_S	44_I	0.515	0.99
104_K	108_L	0.515	0.99
438_I	442_V	0.514	0.99
202_E	206_I	0.514	0.99
202_E	205_G	0.514	0.99
70_L	78_T	0.513	0.99
245_L	248_A	0.512	0.99
264_I	268_I	0.509	0.99
87_I	451_I	0.509	0.99
21_S	29_L	0.509	0.99
326_L	378_D	0.509	0.99
454_C	459_G	0.507	0.99
263_G	266_S	0.504	0.99
368_G	456_L	0.503	0.99
42_I	52_S	0.503	0.99
220_Q	223_F	0.502	0.99
42_I	47_L	0.501	0.99
352_T	429_L	0.500	0.99
448_A	455_L	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3rkoL	1	0.9644	100	0.259	Contact Map
4he8L	1	0.9644	100	0.267	Contact Map
3rkoM	1	0.9168	100	0.268	Contact Map
3rkoN	1	0.903	100	0.278	Contact Map
4he8M	1	0.8752	100	0.311	Contact Map
4he8N	1	0.8376	100	0.342	Contact Map
4he8K	1	0.1842	46.4	0.963	Contact Map
3rkoK	1	0.1921	39.4	0.965	Contact Map
4he8J	1	0.297	15.4	0.971	Contact Map
3e4oA	2	0.0594	3.7	0.978	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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