FLHP - BACSU - GREMLIN Contacts

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FLHP - Flagellar hook-basal body complex protein FlhP

UniProt:	P39753	Sequences: MLRSMLTASTTLNQLQQQIDTISSNLSNSNTTGYKAKDTNFSELVRQQFDQVDEKNEEVAKARKTPPGLRLGVGAMMSSRLVSDQGSIQKTDRDLDIAFTSPYQYLQVNVNGNRQYTRDGALYVTPSAANANQLQLVTGNGYPVLDENGNTVNIDSSMKNITINKNGTLTASDGNAVQRFNLGVVQVNNPQELKSEGNNLFSIDNAAAFEELNGANRQNIGMQQGSLEMSNVDISEQMTDLITSQRSYQLNSRTITMGDQMLGLINSVR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	269 (245)
Sequences:	5618 (4206)
Seq/√Len:	268.7

ECOLI - FLGE FLGF FLGG
BACSU - FLHP FLGG FLHO

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
105_Y	122_L	3.579	1.00
97_I	163_I	3.279	1.00
164_N	168_T	3.208	1.00
125_T	135_Q	3.126	1.00
196_E	202_S	3.042	1.00
116_Y	187_V	3.013	1.00
88_I	226_S	2.926	1.00
171_A	179_R	2.925	1.00
213_N	220_I	2.775	1.00
88_I	98_A	2.728	1.00
138_T	142_Y	2.716	1.00
106_L	185_V	2.638	1.00
135_Q	143_P	2.538	1.00
102_P	186_Q	2.521	1.00
194_K	202_S	2.330	1.00
223_Q	226_S	2.292	1.00
168_T	178_Q	2.246	1.00
125_T	133_Q	2.209	1.00
109_N	115_Q	2.170	1.00
260_Q	263_G	2.161	1.00
194_K	204_D	2.157	1.00
109_N	113_N	2.150	1.00
126_P	133_Q	2.092	1.00
83_S	104_Q	2.087	1.00
36_A	237_Q	2.065	1.00
107_Q	117_T	2.059	1.00
89_Q	229_M	2.036	1.00
203_I	209_F	2.009	1.00
37_K	195_S	1.992	1.00
90_K	226_S	1.970	1.00
185_V	212_L	1.958	1.00
97_I	222_M	1.930	1.00
18_Q	244_S	1.909	1.00
125_T	137_V	1.899	1.00
115_Q	200_L	1.892	1.00
115_Q	196_E	1.873	1.00
106_L	114_R	1.869	1.00
4_S	258_G	1.865	1.00
119_D	199_N	1.843	1.00
141_G	144_V	1.840	1.00
19_I	241_L	1.801	1.00
18_Q	240_D	1.788	1.00
22_I	244_S	1.777	1.00
164_N	170_T	1.775	1.00
189_N	192_E	1.721	1.00
99_F	184_V	1.717	1.00
253_R	256_T	1.712	1.00
26_L	234_I	1.701	1.00
163_I	169_L	1.679	1.00
100_T	223_Q	1.633	1.00
108_V	145_L	1.620	1.00
107_Q	138_T	1.595	1.00
19_I	244_S	1.591	1.00
233_D	236_E	1.549	1.00
95_L	161_I	1.549	1.00
170_T	178_Q	1.534	1.00
91_T	96_D	1.524	1.00
236_E	240_D	1.519	1.00
102_P	190_P	1.511	1.00
32_T	227_L	1.508	1.00
14_Q	75_A	1.497	1.00
136_L	144_V	1.497	1.00
240_D	243_T	1.472	1.00
122_L	144_V	1.470	1.00
168_T	181_N	1.464	1.00
181_N	214_G	1.460	1.00
87_S	229_M	1.440	1.00
41_F	45_V	1.431	1.00
135_Q	153_N	1.422	1.00
97_I	105_Y	1.412	1.00
15_L	247_S	1.410	1.00
187_V	203_I	1.407	1.00
21_T	39_T	1.394	1.00
32_T	119_D	1.379	1.00
22_I	241_L	1.362	1.00
146_D	150_N	1.357	1.00
97_I	182_L	1.346	1.00
110_V	142_Y	1.346	1.00
115_Q	202_S	1.343	1.00
8_A	254_T	1.332	1.00
81_L	195_S	1.325	1.00
29_S	234_I	1.323	1.00
158_M	171_A	1.316	1.00
107_Q	122_L	1.314	1.00
16_Q	20_D	1.310	1.00
36_A	236_E	1.283	1.00
186_Q	220_I	1.267	1.00
109_N	142_Y	1.265	1.00
141_G	145_L	1.253	1.00
237_Q	240_D	1.246	1.00
107_Q	200_L	1.242	1.00
154_I	158_M	1.222	1.00
256_T	259_D	1.214	1.00
170_T	176_A	1.211	1.00
113_N	202_S	1.187	1.00
119_D	139_G	1.182	1.00
32_T	121_A	1.177	1.00
95_L	136_L	1.175	1.00
17_Q	77_M	1.171	1.00
147_E	181_N	1.167	1.00
105_Y	182_L	1.165	1.00
104_Q	190_P	1.160	1.00
107_Q	115_Q	1.140	1.00
97_I	224_Q	1.139	1.00
146_D	183_G	1.137	1.00
34_Y	37_K	1.137	1.00
204_D	207_A	1.137	1.00
83_S	201_F	1.127	1.00
140_N	198_N	1.122	1.00
207_A	210_E	1.117	1.00
99_F	221_G	1.111	1.00
36_A	82_V	1.108	1.00
37_K	81_L	1.092	1.00
38_D	80_R	1.079	1.00
39_T	77_M	1.073	1.00
106_L	145_L	1.069	1.00
196_E	200_L	1.065	1.00
11_T	251_N	1.053	1.00
203_I	207_A	1.044	1.00
152_V	155_D	1.042	1.00
24_S	34_Y	1.035	1.00
93_R	96_D	1.030	1.00
70_R	195_S	1.028	1.00
15_L	18_Q	1.027	1.00
94_D	160_N	1.021	1.00
192_E	204_D	1.003	1.00
15_L	244_S	0.997	1.00
195_S	201_F	0.977	1.00
99_F	103_Y	0.976	1.00
95_L	124_V	0.973	1.00
155_D	158_M	0.971	1.00
138_T	144_V	0.971	1.00
48_Q	51_Q	0.962	1.00
22_I	237_Q	0.955	1.00
246_R	249_Q	0.954	1.00
259_D	262_L	0.935	1.00
142_Y	200_L	0.932	1.00
187_V	193_L	0.927	1.00
106_L	183_G	0.925	1.00
116_Y	210_E	0.921	1.00
98_A	226_S	0.919	1.00
214_G	217_R	0.912	1.00
74_G	77_M	0.909	1.00
42_S	76_M	0.904	1.00
172_S	176_A	0.899	1.00
23_S	254_T	0.896	1.00
136_L	152_V	0.891	1.00
106_L	212_L	0.887	1.00
146_D	180_F	0.885	1.00
165_K	223_Q	0.885	1.00
38_D	82_V	0.884	1.00
93_R	123_Y	0.878	1.00
18_Q	22_I	0.874	1.00
152_V	156_S	0.869	1.00
9_S	12_L	0.868	1.00
41_F	44_L	0.863	1.00
25_N	237_Q	0.862	1.00
153_N	156_S	0.849	1.00
121_A	139_G	0.849	1.00
21_T	34_Y	0.839	1.00
19_I	261_M	0.837	0.99
262_L	266_N	0.833	0.99
145_L	151_T	0.830	0.99
151_T	154_I	0.828	0.99
123_Y	139_G	0.822	0.99
114_R	183_G	0.820	0.99
154_I	157_S	0.818	0.99
2_L	262_L	0.814	0.99
43_E	46_R	0.812	0.99
108_V	143_P	0.811	0.99
184_V	220_I	0.810	0.99
97_I	122_L	0.802	0.99
96_D	121_A	0.801	0.99
263_G	267_S	0.799	0.99
108_V	112_G	0.792	0.99
19_I	245_Q	0.785	0.99
36_A	231_N	0.784	0.99
156_S	172_S	0.783	0.99
11_T	15_L	0.781	0.99
8_A	255_I	0.778	0.99
180_F	183_G	0.777	0.99
155_D	171_A	0.776	0.99
44_L	48_Q	0.773	0.99
235_S	238_M	0.765	0.99
18_Q	243_T	0.765	0.99
144_V	182_L	0.761	0.99
16_Q	248_Y	0.759	0.99
12_L	252_S	0.748	0.99
192_E	208_A	0.740	0.99
3_R	73_V	0.739	0.99
109_N	112_G	0.736	0.99
258_G	261_M	0.734	0.99
146_D	152_V	0.734	0.99
114_R	145_L	0.733	0.99
246_R	259_D	0.725	0.99
238_M	256_T	0.723	0.99
138_T	200_L	0.723	0.99
256_T	260_Q	0.721	0.98
107_Q	142_Y	0.718	0.98
5_M	255_I	0.715	0.98
186_Q	190_P	0.714	0.98
99_F	105_Y	0.713	0.98
140_N	144_V	0.709	0.98
171_A	175_N	0.705	0.98
108_V	114_R	0.705	0.98
13_N	233_D	0.699	0.98
149_G	152_V	0.696	0.98
232_V	237_Q	0.694	0.98
40_N	80_R	0.692	0.98
125_T	143_P	0.692	0.98
43_E	72_G	0.691	0.98
32_T	229_M	0.690	0.98
215_A	222_M	0.690	0.98
105_Y	120_G	0.683	0.98
125_T	134_L	0.683	0.98
257_M	260_Q	0.679	0.98
85_Q	88_I	0.677	0.98
54_E	72_G	0.676	0.98
5_M	262_L	0.672	0.98
255_I	259_D	0.671	0.98
88_I	223_Q	0.668	0.98
4_S	254_T	0.664	0.97
217_R	221_G	0.661	0.97
187_V	208_A	0.658	0.97
103_Y	118_R	0.653	0.97
235_S	243_T	0.653	0.97
4_S	7_T	0.645	0.97
187_V	210_E	0.643	0.97
248_Y	252_S	0.640	0.97
156_S	173_D	0.635	0.97
8_A	251_N	0.635	0.97
2_L	261_M	0.633	0.97
215_A	220_I	0.631	0.97
42_S	45_V	0.630	0.96
252_S	261_M	0.630	0.96
143_P	151_T	0.630	0.96
135_Q	151_T	0.630	0.96
254_T	258_G	0.628	0.96
6_L	243_T	0.627	0.96
40_N	44_L	0.626	0.96
85_Q	100_T	0.626	0.96
85_Q	101_S	0.626	0.96
25_N	34_Y	0.624	0.96
12_L	15_L	0.621	0.96
94_D	224_Q	0.619	0.96
234_I	249_Q	0.619	0.96
35_K	86_G	0.617	0.96
264_L	267_S	0.615	0.96
40_N	79_S	0.612	0.96
10_T	14_Q	0.611	0.96
33_G	201_F	0.610	0.96
156_S	178_Q	0.609	0.96
237_Q	245_Q	0.609	0.96
38_D	41_F	0.608	0.96
72_G	75_A	0.608	0.96
99_F	222_M	0.607	0.96
178_Q	181_N	0.607	0.96
192_E	206_A	0.607	0.96
17_Q	21_T	0.606	0.96
173_D	176_A	0.606	0.96
13_N	236_E	0.605	0.96
34_Y	38_D	0.604	0.96
213_N	216_N	0.603	0.96
3_R	20_D	0.603	0.96
243_T	262_L	0.600	0.95
145_L	183_G	0.600	0.95
166_N	181_N	0.599	0.95
104_Q	201_F	0.599	0.95
192_E	207_A	0.598	0.95
106_L	182_L	0.598	0.95
172_S	175_N	0.597	0.95
161_I	171_A	0.597	0.95
73_V	76_M	0.595	0.95
173_D	177_V	0.594	0.95
122_L	136_L	0.592	0.95
183_G	212_L	0.591	0.95
153_N	175_N	0.587	0.95
215_A	219_N	0.587	0.95
12_L	255_I	0.587	0.95
188_N	191_Q	0.587	0.95
121_A	227_L	0.585	0.95
50_D	53_D	0.581	0.95
9_S	15_L	0.578	0.94
213_N	217_R	0.575	0.94
117_T	138_T	0.574	0.94
182_L	222_M	0.573	0.94
14_Q	41_F	0.572	0.94
45_V	49_F	0.571	0.94
21_T	77_M	0.571	0.94
169_L	180_F	0.569	0.94
159_K	172_S	0.568	0.94
99_F	104_Q	0.566	0.94
184_V	187_V	0.565	0.94
164_N	178_Q	0.564	0.94
89_Q	227_L	0.563	0.94
103_Y	184_V	0.562	0.93
15_L	239_T	0.561	0.93
32_T	89_Q	0.560	0.93
249_Q	253_R	0.560	0.93
49_F	53_D	0.559	0.93
238_M	264_L	0.557	0.93
180_F	185_V	0.556	0.93
256_T	263_G	0.556	0.93
102_P	219_N	0.555	0.93
250_L	254_T	0.555	0.93
245_Q	252_S	0.555	0.93
249_Q	256_T	0.555	0.93
211_E	220_I	0.554	0.93
26_L	237_Q	0.554	0.93
257_M	261_M	0.550	0.93
196_E	199_N	0.550	0.93
48_Q	70_R	0.549	0.93
20_D	24_S	0.548	0.93
217_R	220_I	0.547	0.93
150_N	153_N	0.545	0.92
2_L	7_T	0.544	0.92
163_I	224_Q	0.543	0.92
42_S	78_S	0.540	0.92
83_S	190_P	0.538	0.92
20_D	73_V	0.535	0.92
216_N	219_N	0.535	0.92
48_Q	52_V	0.532	0.92
7_T	12_L	0.532	0.92
206_A	209_F	0.532	0.92
248_Y	258_G	0.532	0.92
99_F	122_L	0.528	0.91
49_F	52_V	0.527	0.91
203_I	208_A	0.525	0.91
97_I	225_G	0.524	0.91
7_T	20_D	0.524	0.91
13_N	17_Q	0.524	0.91
5_M	11_T	0.523	0.91
186_Q	211_E	0.522	0.91
46_R	72_G	0.521	0.91
146_D	149_G	0.521	0.91
258_G	265_I	0.521	0.91
142_Y	145_L	0.520	0.91
35_K	228_E	0.520	0.91
123_Y	126_P	0.517	0.90
163_I	182_L	0.517	0.90
108_V	151_T	0.517	0.90
239_T	243_T	0.516	0.90
176_A	205_N	0.516	0.90
248_Y	261_M	0.516	0.90
157_S	172_S	0.515	0.90
74_G	251_N	0.514	0.90
184_V	222_M	0.513	0.90
156_S	171_A	0.513	0.90
250_L	253_R	0.512	0.90
165_K	169_L	0.511	0.90
234_I	250_L	0.511	0.90
254_T	257_M	0.509	0.90
100_T	221_G	0.509	0.90
11_T	75_A	0.508	0.90
249_Q	252_S	0.508	0.90
147_E	150_N	0.507	0.90
150_N	154_I	0.506	0.89
122_L	139_G	0.506	0.89
124_V	136_L	0.504	0.89
136_L	182_L	0.504	0.89
138_T	141_G	0.503	0.89
238_M	254_T	0.502	0.89
5_M	9_S	0.502	0.89
105_Y	119_D	0.501	0.89
6_L	10_T	0.501	0.89
253_R	264_L	0.501	0.89
24_S	37_K	0.500	0.89
111_N	115_Q	0.500	0.89

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3a69A	3	0.6877	100	0.127	Contact Map
1wlgA	2	0.487	100	0.584	Contact Map
4ut1A	1	0.7695	99.3	0.791	Contact Map
1oryB	2	0.145	10.8	0.961	Contact Map
2x5pA	1	0.3717	8.5	0.963	Contact Map
3j9aA	1	0.2082	4.8	0.967	Contact Map
3zqeA	1	0.2305	3.7	0.969	Contact Map
2m4eA	1	0.0669	2.4	0.971	Contact Map
3eabG	1	0.1524	1.4	0.975	Contact Map
4tkcA	2	0.4164	1.3	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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