BACD - BACSU - GREMLIN Contacts

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BACD - Alanine-anticapsin ligase BacD

UniProt:	P39641	Sequences: MERKTVLVIADLGGCPPHMFYKSAAEKYNLVSFIPRPFAITASHAALIEKYSVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTNNELFIAPMAKACERLGLRGAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKLMKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEPYYVADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFELKGSNSQDVAESIRQIQQHAKLTAKYVLPV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	472 (384)
Sequences:	18319 (10428)
Seq/√Len:	532.1

ECOLI - ACCC PUR2 PURT PURK
BACSU - BACD ACCC1 ACCC2 PUR2 PURT PURK
HALSA - Q9HQ67 Q9HRM3
SULSO - Q7LXR2 Q97VY6 PURT PURK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
169_E	194_T	3.940	1.00
165_R	198_E	3.305	1.00
94_K	98_M	3.290	1.00
193_D	196_T	3.266	1.00
31_V	53_V	3.152	1.00
160_T	163_D	3.006	1.00
292_E	296_K	2.924	1.00
154_K	227_E	2.876	1.00
117_K	133_E	2.855	1.00
88_V	91_Q	2.850	1.00
293_A	296_K	2.830	1.00
30_L	102_D	2.695	1.00
117_K	121_R	2.694	1.00
288_K	292_E	2.671	1.00
254_D	257_Y	2.667	1.00
315_M	319_E	2.652	1.00
173_T	194_T	2.635	1.00
295_K	299_E	2.625	1.00
447_N	450_D	2.608	1.00
445_G	450_D	2.542	1.00
97_E	122_L	2.474	1.00
352_D	358_K	2.381	1.00
192_T	196_T	2.357	1.00
156_K	170_E	2.344	1.00
60_D	76_W	2.235	1.00
113_A	136_R	2.211	1.00
284_E	288_K	2.208	1.00
147_K	300_G	2.175	1.00
143_D	147_K	2.157	1.00
145_F	297_A	2.127	1.00
118_A	122_L	2.079	1.00
192_T	230_Q	2.075	1.00
167_A	170_E	2.043	1.00
140_K	143_D	2.005	1.00
278_T	341_V	2.004	1.00
289_K	319_E	2.003	1.00
283_D	286_A	1.988	1.00
194_T	198_E	1.981	1.00
293_A	320_P	1.978	1.00
348_Q	352_D	1.962	1.00
446_S	450_D	1.958	1.00
230_Q	316_K	1.902	1.00
252_M	298_N	1.891	1.00
93_V	122_L	1.863	1.00
349_L	361_D	1.856	1.00
377_C	455_I	1.833	1.00
89_V	118_A	1.827	1.00
198_E	202_N	1.803	1.00
190_L	228_F	1.781	1.00
93_V	97_E	1.753	1.00
104_I	124_L	1.735	1.00
296_K	299_E	1.731	1.00
205_N	221_A	1.710	1.00
50_K	348_Q	1.705	1.00
422_A	425_T	1.695	1.00
165_R	194_T	1.691	1.00
161_L	202_N	1.681	1.00
398_V	426_S	1.668	1.00
47_L	50_K	1.659	1.00
133_E	140_K	1.642	1.00
166_A	170_E	1.641	1.00
167_A	171_I	1.636	1.00
119_C	124_L	1.635	1.00
161_L	198_E	1.624	1.00
343_G	370_E	1.622	1.00
286_A	289_K	1.617	1.00
91_Q	94_K	1.591	1.00
120_E	129_V	1.585	1.00
128_G	131_A	1.577	1.00
46_A	49_E	1.575	1.00
90_E	118_A	1.575	1.00
42_A	70_H	1.573	1.00
144_A	300_G	1.565	1.00
289_K	292_E	1.554	1.00
161_L	165_R	1.529	1.00
53_V	73_S	1.520	1.00
75_Y	95_V	1.516	1.00
60_D	63_K	1.514	1.00
118_A	121_R	1.503	1.00
416_V	419_S	1.491	1.00
148_A	300_G	1.488	1.00
134_N	144_A	1.488	1.00
143_D	146_N	1.476	1.00
199_D	203_R	1.462	1.00
95_V	99_F	1.455	1.00
139_N	143_D	1.452	1.00
428_D	433_E	1.442	1.00
166_A	169_E	1.439	1.00
156_K	167_A	1.431	1.00
286_A	314_L	1.425	1.00
161_L	201_F	1.423	1.00
180_T	222_P	1.416	1.00
340_K	444_K	1.408	1.00
94_K	97_E	1.399	1.00
457_Q	461_H	1.390	1.00
48_I	54_A	1.388	1.00
376_D	440_A	1.374	1.00
425_T	428_D	1.367	1.00
165_R	169_E	1.364	1.00
120_E	128_G	1.361	1.00
227_E	321_G	1.358	1.00
73_S	99_F	1.357	1.00
130_Q	134_N	1.357	1.00
231_G	316_K	1.350	1.00
144_A	148_A	1.350	1.00
229_L	323_I	1.349	1.00
380_Y	436_N	1.348	1.00
340_K	442_E	1.344	1.00
89_V	93_V	1.340	1.00
32_S	52_S	1.332	1.00
449_Q	453_E	1.326	1.00
159_T	163_D	1.322	1.00
117_K	130_Q	1.317	1.00
288_K	291_V	1.307	1.00
134_N	140_K	1.293	1.00
162_E	166_A	1.289	1.00
96_A	124_L	1.287	1.00
31_V	55_V	1.280	1.00
139_N	157_R	1.277	1.00
343_G	368_D	1.274	1.00
146_N	154_K	1.273	1.00
159_T	222_P	1.267	1.00
173_T	193_D	1.267	1.00
144_A	147_K	1.267	1.00
75_Y	99_F	1.258	1.00
104_I	119_C	1.254	1.00
128_G	304_Q	1.252	1.00
31_V	73_S	1.252	1.00
329_F	346_M	1.238	1.00
141_M	145_F	1.235	1.00
168_L	173_T	1.234	1.00
142_R	226_E	1.233	1.00
135_A	325_S	1.230	1.00
163_D	166_A	1.228	1.00
168_L	175_L	1.227	1.00
46_A	50_K	1.218	1.00
285_E	289_K	1.214	1.00
175_L	225_A	1.200	1.00
158_V	167_A	1.200	1.00
34_I	45_A	1.198	1.00
287_K	291_V	1.194	1.00
284_E	287_K	1.190	1.00
298_N	301_L	1.189	1.00
450_D	454_S	1.184	1.00
58_D	63_K	1.182	1.00
96_A	104_I	1.180	1.00
202_N	206_D	1.176	1.00
398_V	425_T	1.173	1.00
32_S	351_L	1.173	1.00
56_I	67_D	1.173	1.00
371_P	374_V	1.171	1.00
456_R	460_Q	1.169	1.00
256_E	304_Q	1.167	1.00
125_R	356_F	1.166	1.00
32_S	48_I	1.157	1.00
414_E	417_S	1.155	1.00
115_M	119_C	1.150	1.00
445_G	454_S	1.148	1.00
162_E	165_R	1.138	1.00
195_E	199_D	1.126	1.00
291_V	295_K	1.125	1.00
289_K	293_A	1.123	1.00
157_R	222_P	1.123	1.00
146_N	152_S	1.120	1.00
33_F	57_K	1.118	1.00
120_E	304_Q	1.112	1.00
69_E	422_A	1.112	1.00
74_I	77_A	1.112	1.00
34_I	44_H	1.110	1.00
47_L	348_Q	1.110	1.00
93_V	118_A	1.108	1.00
422_A	426_S	1.088	1.00
441_F	462_A	1.088	1.00
443_L	455_I	1.086	1.00
189_T	204_V	1.082	1.00
154_K	171_I	1.081	1.00
452_A	456_R	1.075	1.00
250_G	310_T	1.073	1.00
457_Q	460_Q	1.069	1.00
142_R	152_S	1.068	1.00
454_S	457_Q	1.066	1.00
344_L	349_L	1.064	1.00
292_E	295_K	1.056	1.00
177_L	223_F	1.056	1.00
250_G	290_I	1.052	1.00
72_D	75_Y	1.051	1.00
90_E	94_K	1.043	1.00
370_E	444_K	1.038	1.00
199_D	202_N	1.037	1.00
441_F	458_I	1.037	1.00
164_F	197_A	1.034	1.00
146_N	156_K	1.032	1.00
453_E	457_Q	1.030	1.00
169_E	198_E	1.029	1.00
145_F	322_L	1.027	1.00
316_K	319_E	1.021	1.00
57_K	77_A	1.021	1.00
379_L	459_Q	1.021	1.00
283_D	318_R	1.020	1.00
404_I	462_A	1.019	1.00
45_A	49_E	1.009	1.00
151_K	293_A	1.008	1.00
401_A	404_I	1.006	1.00
71_P	74_I	1.001	1.00
400_E	465_T	1.000	1.00
196_T	199_D	0.999	1.00
143_D	155_N	0.987	1.00
52_S	356_F	0.985	1.00
45_A	48_I	0.985	1.00
139_N	180_T	0.984	1.00
117_K	129_V	0.984	1.00
260_I	362_L	0.980	1.00
110_L	114_P	0.977	1.00
412_D	415_I	0.976	1.00
282_L	286_A	0.975	1.00
189_T	203_R	0.973	1.00
137_D	180_T	0.973	1.00
151_K	319_E	0.970	1.00
201_F	205_N	0.970	1.00
230_Q	315_M	0.968	1.00
401_A	465_T	0.967	1.00
49_E	72_D	0.965	1.00
176_I	190_L	0.955	1.00
164_F	201_F	0.951	1.00
399_I	421_A	0.948	1.00
105_T	350_L	0.947	1.00
255_G	299_E	0.945	1.00
285_E	288_K	0.945	1.00
130_Q	133_E	0.944	1.00
253_A	307_A	0.943	1.00
415_I	443_L	0.942	1.00
128_G	302_G	0.941	1.00
422_A	428_D	0.938	1.00
349_L	352_D	0.936	1.00
372_Y	446_S	0.934	1.00
55_V	59_K	0.933	1.00
158_V	164_F	0.930	1.00
171_I	175_L	0.926	1.00
250_G	294_A	0.922	1.00
351_L	356_F	0.920	1.00
176_I	228_F	0.919	1.00
89_V	115_M	0.918	1.00
189_T	200_E	0.918	1.00
443_L	458_I	0.915	1.00
44_H	47_L	0.915	1.00
254_D	259_P	0.910	1.00
421_A	425_T	0.910	1.00
253_A	349_L	0.907	1.00
31_V	102_D	0.898	1.00
253_A	353_V	0.896	1.00
44_H	48_I	0.894	1.00
263_H	367_L	0.892	1.00
227_E	319_E	0.891	1.00
45_A	70_H	0.884	1.00
181_Y	220_E	0.879	1.00
201_F	223_F	0.879	1.00
95_V	101_A	0.878	1.00
294_A	310_T	0.878	1.00
116_A	120_E	0.877	1.00
414_E	418_F	0.872	1.00
92_I	119_C	0.868	1.00
120_E	130_Q	0.865	1.00
314_L	320_P	0.864	1.00
44_H	105_T	0.862	1.00
78_H	87_E	0.859	1.00
161_L	205_N	0.857	1.00
250_G	291_V	0.857	1.00
421_A	424_G	0.854	1.00
33_F	96_A	0.851	1.00
374_V	451_V	0.851	1.00
195_E	198_E	0.847	1.00
297_A	300_G	0.844	1.00
191_I	200_E	0.841	1.00
403_D	463_K	0.836	1.00
363_P	366_L	0.836	1.00
251_I	353_V	0.835	1.00
54_A	58_D	0.833	1.00
310_T	325_S	0.832	1.00
189_T	207_Y	0.831	1.00
458_I	461_H	0.829	1.00
96_A	119_C	0.827	1.00
289_K	320_P	0.821	1.00
252_M	257_Y	0.820	1.00
51_Y	348_Q	0.818	1.00
56_I	71_P	0.817	1.00
58_D	74_I	0.813	1.00
372_Y	444_K	0.812	1.00
173_T	197_A	0.812	1.00
137_D	222_P	0.812	1.00
203_R	207_Y	0.809	1.00
177_L	201_F	0.808	1.00
59_K	63_K	0.803	1.00
53_V	72_D	0.801	1.00
261_A	291_V	0.798	1.00
360_A	363_P	0.797	1.00
72_D	76_W	0.795	1.00
60_D	64_S	0.794	1.00
297_A	301_L	0.790	1.00
93_V	121_R	0.789	1.00
168_L	201_F	0.788	1.00
139_N	222_P	0.787	1.00
56_I	59_K	0.786	1.00
55_V	58_D	0.785	1.00
168_L	197_A	0.784	1.00
258_F	299_E	0.783	1.00
420_A	425_T	0.781	1.00
175_L	191_I	0.779	1.00
378_H	381_P	0.779	1.00
261_A	278_T	0.775	1.00
401_A	423_P	0.773	1.00
203_R	206_D	0.773	1.00
168_L	172_G	0.772	1.00
117_K	120_E	0.772	1.00
266_T	280_S	0.769	1.00
116_A	119_C	0.769	1.00
415_I	419_S	0.767	1.00
164_F	225_A	0.766	1.00
109_E	112_I	0.766	1.00
415_I	418_F	0.764	1.00
50_K	345_D	0.763	1.00
277_I	448_S	0.763	1.00
296_K	300_G	0.760	1.00
146_N	155_N	0.757	1.00
256_E	361_D	0.754	1.00
424_G	427_V	0.752	1.00
400_E	463_K	0.751	1.00
401_A	463_K	0.749	1.00
165_R	202_N	0.749	1.00
251_I	349_L	0.749	1.00
177_L	200_E	0.747	1.00
445_G	451_V	0.743	1.00
397_L	400_E	0.740	1.00
377_C	380_Y	0.739	1.00
229_L	321_G	0.737	1.00
294_A	312_I	0.737	1.00
417_S	439_A	0.736	1.00
58_D	61_Y	0.736	1.00
275_S	377_C	0.735	1.00
381_P	397_L	0.734	1.00
251_I	260_I	0.733	1.00
57_K	92_I	0.733	1.00
45_A	50_K	0.732	1.00
131_A	304_Q	0.731	1.00
169_E	173_T	0.730	1.00
412_D	458_I	0.729	1.00
154_K	170_E	0.729	1.00
290_I	320_P	0.725	1.00
177_L	191_I	0.724	1.00
89_V	114_P	0.723	1.00
42_A	67_D	0.722	1.00
298_N	308_T	0.722	1.00
156_K	163_D	0.721	1.00
135_A	301_L	0.720	1.00
163_D	167_A	0.719	1.00
74_I	78_H	0.719	1.00
73_S	76_W	0.716	1.00
263_H	369_Q	0.716	1.00
259_P	295_K	0.715	1.00
131_A	302_G	0.713	1.00
426_S	433_E	0.709	1.00
276_H	337_N	0.708	1.00
336_P	339_K	0.708	1.00
343_G	366_L	0.707	1.00
150_V	322_L	0.706	1.00
450_D	453_E	0.706	1.00
75_Y	78_H	0.705	1.00
376_D	379_L	0.703	1.00
77_A	95_V	0.703	1.00
54_A	59_K	0.702	1.00
61_Y	64_S	0.700	1.00
420_A	424_G	0.697	1.00
49_E	54_A	0.696	1.00
72_D	77_A	0.695	1.00
273_E	276_H	0.695	1.00
176_I	188_V	0.695	1.00
379_L	462_A	0.694	1.00
63_K	66_A	0.693	1.00
48_I	52_S	0.692	1.00
313_K	323_I	0.692	1.00
339_K	442_E	0.691	1.00
350_L	354_L	0.691	1.00
257_Y	298_N	0.690	1.00
449_Q	452_A	0.688	1.00
253_A	256_E	0.684	1.00
297_A	325_S	0.682	1.00
218_T	221_A	0.681	1.00
274_T	380_Y	0.681	1.00
161_L	197_A	0.675	1.00
125_R	351_L	0.675	1.00
398_V	401_A	0.672	1.00
168_L	171_I	0.671	1.00
293_A	312_I	0.671	1.00
443_L	451_V	0.671	1.00
415_I	420_A	0.670	1.00
349_L	362_L	0.667	1.00
205_N	223_F	0.665	1.00
119_C	122_L	0.665	1.00
55_V	60_D	0.665	1.00
423_P	426_S	0.664	1.00
93_V	124_L	0.664	1.00
143_D	157_R	0.662	1.00
286_A	318_R	0.662	1.00
115_M	118_A	0.661	1.00
44_H	50_K	0.661	1.00
336_P	376_D	0.660	1.00
139_N	224_I	0.659	1.00
420_A	423_P	0.659	1.00
416_V	420_A	0.658	1.00
421_A	426_S	0.658	1.00
439_A	442_E	0.657	1.00
35_P	115_M	0.656	1.00
261_A	369_Q	0.655	1.00
171_I	227_E	0.655	1.00
168_L	225_A	0.653	1.00
362_L	367_L	0.651	1.00
439_A	462_A	0.650	1.00
56_I	60_D	0.649	1.00
264_D	277_I	0.649	1.00
404_I	461_H	0.648	1.00
417_S	421_A	0.647	1.00
364_D	367_L	0.645	1.00
402_I	462_A	0.644	1.00
423_P	428_D	0.642	1.00
191_I	197_A	0.641	1.00
262_I	280_S	0.639	1.00
142_R	153_I	0.638	1.00
94_K	122_L	0.637	1.00
103_A	354_L	0.636	1.00
250_G	308_T	0.635	1.00
177_L	197_A	0.634	1.00
261_A	341_V	0.632	1.00
31_V	99_F	0.631	1.00
73_S	77_A	0.630	1.00
153_I	229_L	0.630	1.00
167_A	225_A	0.630	1.00
110_L	113_A	0.630	1.00
264_D	280_S	0.630	1.00
417_S	420_A	0.629	1.00
414_E	454_S	0.626	1.00
31_V	100_G	0.626	1.00
418_F	422_A	0.622	1.00
410_K	413_T	0.621	1.00
137_D	140_K	0.621	1.00
403_D	423_P	0.620	1.00
161_L	164_F	0.617	1.00
186_I	207_Y	0.616	1.00
71_P	76_W	0.615	1.00
303_L	308_T	0.614	1.00
342_F	369_Q	0.613	1.00
414_E	419_S	0.613	1.00
52_S	55_V	0.612	1.00
206_D	216_A	0.612	1.00
304_Q	353_V	0.612	1.00
278_T	337_N	0.608	1.00
249_E	307_A	0.603	1.00
216_A	219_F	0.603	1.00
362_L	365_G	0.601	1.00
129_V	133_E	0.600	1.00
324_E	328_R	0.597	1.00
33_F	101_A	0.595	1.00
341_V	369_Q	0.595	1.00
175_L	227_E	0.594	1.00
97_E	124_L	0.593	1.00
260_I	367_L	0.592	1.00
424_G	428_D	0.591	0.99
282_L	287_K	0.591	0.99
66_A	422_A	0.590	0.99
269_I	274_T	0.590	0.99
200_E	204_V	0.589	0.99
397_L	451_V	0.589	0.99
125_R	304_Q	0.588	0.99
204_V	223_F	0.587	0.99
248_I	280_S	0.585	0.99
260_I	263_H	0.585	0.99
264_D	287_K	0.583	0.99
262_I	265_K	0.582	0.99
289_K	296_K	0.582	0.99
45_A	54_A	0.579	0.99
253_A	361_D	0.576	0.99
261_A	295_K	0.576	0.99
68_F	74_I	0.575	0.99
51_Y	351_L	0.574	0.99
172_G	194_T	0.572	0.99
140_K	144_A	0.572	0.99
315_M	321_G	0.570	0.99
216_A	220_E	0.569	0.99
30_L	53_V	0.568	0.99
397_L	401_A	0.568	0.99
48_I	351_L	0.567	0.99
153_I	323_I	0.564	0.99
412_D	418_F	0.563	0.99
451_V	455_I	0.563	0.99
315_M	318_R	0.562	0.99
132_A	327_A	0.562	0.99
42_A	66_A	0.562	0.99
303_L	327_A	0.560	0.99
92_I	104_I	0.557	0.99
229_L	315_M	0.556	0.99
337_N	340_K	0.555	0.99
180_T	224_I	0.554	0.99
262_I	287_K	0.554	0.99
173_T	192_T	0.552	0.99
369_Q	372_Y	0.551	0.99
296_K	301_L	0.550	0.99
197_A	201_F	0.550	0.99
411_G	415_I	0.548	0.99
142_R	146_N	0.545	0.99
263_H	341_V	0.544	0.99
377_C	459_Q	0.542	0.99
413_T	418_F	0.542	0.99
362_L	366_L	0.541	0.99
42_A	45_A	0.539	0.99
52_S	102_D	0.538	0.99
125_R	256_E	0.538	0.99
399_I	402_I	0.537	0.99
419_S	422_A	0.536	0.99
283_D	314_L	0.536	0.99
108_N	111_F	0.536	0.99
351_L	354_L	0.535	0.99
87_E	114_P	0.534	0.99
420_A	428_D	0.534	0.99
54_A	57_K	0.532	0.99
141_M	322_L	0.531	0.99
107_N	111_F	0.530	0.99
421_A	427_V	0.528	0.99
422_A	427_V	0.528	0.99
188_V	271_F	0.527	0.99
249_E	263_H	0.526	0.99
134_N	147_K	0.525	0.99
358_K	362_L	0.524	0.99
253_A	360_A	0.524	0.99
443_L	454_S	0.523	0.99
45_A	71_P	0.523	0.99
97_E	121_R	0.523	0.99
196_T	200_E	0.523	0.99
376_D	380_Y	0.522	0.99
134_N	327_A	0.522	0.99
192_T	228_F	0.522	0.99
455_I	459_Q	0.521	0.99
370_E	446_S	0.519	0.99
373_Y	448_S	0.518	0.99
376_D	442_E	0.518	0.99
120_E	125_R	0.515	0.99
191_I	196_T	0.515	0.99
251_I	307_A	0.514	0.99
177_L	225_A	0.514	0.99
109_E	184_S	0.513	0.99
460_Q	463_K	0.513	0.99
34_I	47_L	0.513	0.99
66_A	70_H	0.512	0.99
290_I	293_A	0.512	0.99
318_R	321_G	0.512	0.99
102_D	125_R	0.511	0.99
336_P	440_A	0.511	0.99
96_A	101_A	0.510	0.99
144_A	301_L	0.510	0.99
335_I	339_K	0.510	0.99
116_A	129_V	0.508	0.98
149_G	296_K	0.508	0.98
77_A	86_E	0.507	0.98
162_E	198_E	0.506	0.98
420_A	427_V	0.506	0.98
277_I	280_S	0.505	0.98
248_I	294_A	0.505	0.98
404_I	417_S	0.504	0.98
413_T	416_V	0.504	0.98
264_D	281_I	0.504	0.98
174_P	228_F	0.504	0.98
165_R	197_A	0.503	0.98
453_E	456_R	0.503	0.98
71_P	75_Y	0.502	0.98
95_V	98_M	0.501	0.98
91_Q	95_V	0.500	0.98
459_Q	462_A	0.500	0.98
437_S	442_E	0.500	0.98
287_K	290_I	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4dimA	1	0.8199	100	0.42	Contact Map
3votA	1	0.8623	100	0.428	Contact Map
3wnzA	2	0.8962	100	0.44	Contact Map
3n6rA	1	0.7267	100	0.452	Contact Map
3u9tA	3	0.8475	100	0.452	Contact Map
3va7A	1	0.7203	100	0.454	Contact Map
4rcnA	6	0.7881	100	0.463	Contact Map
1w96A	1	0.9174	100	0.463	Contact Map
2qf7A	4	0.7754	100	0.465	Contact Map
4qshA	4	0.75	100	0.468	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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