SPSB - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SPSB - Spore coat polysaccharide biosynthesis protein SpsB

UniProt:	P39622	Sequences: MSAYLSNYWVLYRKYVELFDKLRYKGIPLGLISNFYQYISPELRVMMEEEPELFGSVDQHIDEGQIQPFFEERIQNIVKTNDEPVKGKVILHFDYLRFSNENYYQFDPEKTAVLARWSLPHYCDLPVISKREIADSCQKGDSKQYLETACSLLAPYDDHPAFGDQAFRDRLFKDIPLFIEAIDTVDALFEQEKISAVIVGTAEDIYSRVLALMCQRKGAVSICLQHGALMGDEAFIPVFTTYQAVFGAYEAEWFIRKGCKPEQILVTGHPRFDQIFNRTPMDMSIFYRKLAFQPTKKIVLIATQPFSEDFYSGVLQGLSDQKQLQIIIKPHPWEIGKNKLDLYHEAAKKHQACRVIKKELELYDLLPYVDAAVTQTSTVGLEAMLFQKPVLIGKSSGNRSYPYYESLGDFMFDQPDELAHTLVEVLRSPDVHQKAEEARLAFIAANYPVAESTNALFAELKAKTGVDYRREDTE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	474 (394)
Sequences:	548 (518)
Seq/√Len:	26.1

BACSU - SPSB TAGF GGAB TAGB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
450_A	456_L	7.020	1.00
414_Q	417_E	6.322	1.00
455_A	459_E	5.961	1.00
229_L	269_H	5.230	1.00
300_L	365_L	4.063	1.00
412_F	421_T	3.832	1.00
246_F	269_H	3.745	1.00
311_Y	314_V	3.639	1.00
452_S	455_A	3.562	1.00
251_A	266_V	3.442	1.00
392_I	409_D	3.267	1.00
245_V	251_A	3.193	1.00
184_T	187_A	2.906	1.00
303_T	375_Q	2.846	1.00
142_S	145_Y	2.797	1.00
304_Q	375_Q	2.670	0.99
233_E	240_T	2.530	0.99
225_Q	229_L	2.400	0.99
306_F	396_S	2.397	0.99
394_K	411_M	2.255	0.98
303_T	306_F	2.236	0.98
306_F	375_Q	2.211	0.98
304_Q	378_T	2.206	0.98
149_A	158_D	2.172	0.97
270_P	457_F	2.111	0.97
297_K	370_D	2.087	0.96
247_G	250_E	2.047	0.96
225_Q	250_E	1.986	0.95
142_S	201_T	1.981	0.95
226_H	304_Q	1.976	0.95
148_T	152_L	1.944	0.95
304_Q	331_H	1.891	0.94
248_A	252_E	1.880	0.94
179_I	182_I	1.860	0.93
68_P	82_D	1.830	0.93
305_P	375_Q	1.806	0.92
378_T	381_L	1.804	0.92
215_Q	241_T	1.785	0.92
250_E	269_H	1.773	0.92
304_Q	376_T	1.762	0.91
228_A	269_H	1.732	0.91
226_H	377_S	1.723	0.90
306_F	376_T	1.686	0.89
196_A	220_V	1.680	0.89
312_S	316_Q	1.679	0.89
142_S	146_L	1.676	0.89
138_Q	143_K	1.673	0.89
226_H	306_F	1.661	0.89
50_E	53_L	1.655	0.88
297_K	324_L	1.651	0.88
298_I	325_Q	1.650	0.88
227_G	305_P	1.648	0.88
162_F	299_V	1.646	0.88
229_L	246_F	1.645	0.88
271_R	374_T	1.642	0.88
229_L	250_E	1.619	0.87
374_T	409_D	1.613	0.87
319_S	422_L	1.611	0.87
233_E	237_P	1.584	0.86
141_D	144_Q	1.558	0.85
228_A	246_F	1.557	0.85
391_L	412_F	1.540	0.84
128_I	133_I	1.514	0.83
233_E	239_F	1.513	0.83
303_T	376_T	1.512	0.83
413_D	417_E	1.504	0.83
64_G	74_I	1.497	0.83
124_D	128_I	1.491	0.82
92_H	99_S	1.486	0.82
331_H	377_S	1.485	0.82
236_I	240_T	1.479	0.82
129_S	132_E	1.478	0.82
325_Q	354_R	1.469	0.81
375_Q	409_D	1.467	0.81
316_Q	320_D	1.466	0.81
242_Y	265_L	1.465	0.81
135_D	142_S	1.461	0.81
243_Q	254_F	1.459	0.81
233_E	236_I	1.456	0.81
49_E	54_F	1.454	0.81
65_Q	76_N	1.448	0.81
304_Q	396_S	1.433	0.80
248_A	266_V	1.432	0.80
250_E	254_F	1.429	0.80
249_Y	253_W	1.427	0.80
126_P	133_I	1.425	0.79
260_K	263_Q	1.409	0.79
303_T	378_T	1.405	0.78
185_V	188_L	1.396	0.78
209_V	213_M	1.393	0.78
50_E	57_V	1.386	0.77
225_Q	269_H	1.379	0.77
375_Q	378_T	1.372	0.77
159_H	162_F	1.370	0.77
48_E	52_E	1.369	0.77
371_A	391_L	1.361	0.76
49_E	53_L	1.355	0.76
62_D	65_Q	1.347	0.75
298_I	327_I	1.343	0.75
298_I	302_A	1.338	0.75
258_G	367_P	1.336	0.75
223_C	269_H	1.326	0.74
51_P	56_S	1.326	0.74
433_Q	436_E	1.321	0.74
403_Y	407_L	1.316	0.74
248_A	447_Y	1.315	0.74
303_T	382_E	1.293	0.72
381_L	446_N	1.293	0.72
272_F	382_E	1.288	0.72
231_G	269_H	1.288	0.72
299_V	414_Q	1.285	0.72
49_E	52_E	1.280	0.72
228_A	254_F	1.278	0.71
443_I	446_N	1.273	0.71
114_L	117_W	1.273	0.71
73_R	76_N	1.271	0.71
271_R	303_T	1.263	0.71
64_G	69_F	1.259	0.70
327_I	356_I	1.254	0.70
226_H	331_H	1.254	0.70
273_D	451_E	1.251	0.70
145_Y	149_A	1.250	0.70
63_E	66_I	1.248	0.70
245_V	264_I	1.247	0.70
47_M	52_E	1.242	0.69
47_M	50_E	1.241	0.69
235_F	240_T	1.236	0.69
223_C	304_Q	1.232	0.69
237_P	240_T	1.224	0.68
226_H	305_P	1.223	0.68
245_V	272_F	1.217	0.68
388_K	418_L	1.217	0.68
372_A	383_A	1.214	0.67
142_S	224_L	1.205	0.67
246_F	375_Q	1.202	0.67
325_Q	355_V	1.201	0.67
306_F	378_T	1.196	0.66
251_A	261_P	1.196	0.66
365_L	369_V	1.193	0.66
319_S	352_A	1.193	0.66
47_M	51_P	1.193	0.66
273_D	389_P	1.191	0.66
142_S	160_P	1.190	0.66
200_G	250_E	1.183	0.65
231_G	400_S	1.183	0.65
225_Q	301_I	1.170	0.64
304_Q	374_T	1.167	0.64
115_A	118_S	1.165	0.64
151_S	420_H	1.161	0.64
271_R	306_F	1.158	0.64
372_A	379_V	1.155	0.63
173_K	177_L	1.150	0.63
303_T	396_S	1.149	0.63
65_Q	69_F	1.146	0.63
143_K	272_F	1.141	0.62
384_M	408_G	1.139	0.62
372_A	409_D	1.138	0.62
252_E	344_H	1.137	0.62
229_L	254_F	1.130	0.62
302_A	372_A	1.129	0.62
296_K	325_Q	1.121	0.61
375_Q	396_S	1.118	0.61
415_P	419_A	1.116	0.61
305_P	374_T	1.101	0.60
248_A	251_A	1.100	0.60
69_F	76_N	1.099	0.60
141_D	146_L	1.098	0.59
329_K	335_I	1.096	0.59
232_D	304_Q	1.085	0.59
50_E	58_D	1.078	0.58
161_A	356_I	1.074	0.58
269_H	302_A	1.069	0.57
226_H	378_T	1.067	0.57
331_H	378_T	1.067	0.57
208_R	254_F	1.065	0.57
366_L	384_M	1.064	0.57
123_C	131_R	1.062	0.57
48_E	53_L	1.054	0.56
50_E	54_F	1.053	0.56
271_R	275_I	1.050	0.56
226_H	376_T	1.050	0.56
52_E	56_S	1.048	0.56
64_G	76_N	1.046	0.56
51_P	54_F	1.045	0.56
305_P	378_T	1.039	0.55
267_T	457_F	1.036	0.55
298_I	372_A	1.036	0.55
392_I	400_S	1.033	0.55
55_G	58_D	1.030	0.55
125_L	132_E	1.029	0.54
363_Y	400_S	1.028	0.54
53_L	56_S	1.027	0.54
246_F	250_E	1.018	0.54
331_H	375_Q	1.013	0.53
50_E	56_S	1.010	0.53
129_S	133_I	1.003	0.53
460_L	463_K	1.001	0.52
450_A	453_T	0.996	0.52
384_M	390_V	0.994	0.52
47_M	53_L	0.992	0.52
126_P	129_S	0.992	0.52
83_E	103_Y	0.985	0.51
210_L	382_E	0.982	0.51
69_F	81_N	0.982	0.51
175_I	182_I	0.981	0.51
143_K	435_A	0.981	0.51
243_Q	302_A	0.980	0.51
298_I	369_V	0.977	0.51
123_C	128_I	0.976	0.51
327_I	368_Y	0.975	0.50
125_L	130_K	0.969	0.50
225_Q	272_F	0.967	0.50
48_E	51_P	0.960	0.49
380_G	392_I	0.959	0.49
143_K	407_L	0.954	0.49
381_L	386_F	0.952	0.49
126_P	132_E	0.951	0.49
298_I	368_Y	0.949	0.49
150_C	153_L	0.949	0.49
138_Q	142_S	0.948	0.48
130_K	133_I	0.944	0.48
453_T	456_L	0.938	0.48
271_R	375_Q	0.936	0.48
62_D	82_D	0.934	0.47
330_P	384_M	0.933	0.47
223_C	378_T	0.932	0.47
231_G	272_F	0.925	0.47
297_K	323_Q	0.921	0.46
391_L	431_V	0.919	0.46
123_C	132_E	0.917	0.46
133_I	436_E	0.915	0.46
362_L	379_V	0.913	0.46
243_Q	269_H	0.911	0.46
234_A	240_T	0.904	0.45
302_A	355_V	0.903	0.45
94_D	102_N	0.901	0.45
412_F	418_L	0.901	0.45
113_V	420_H	0.900	0.45
303_T	331_H	0.899	0.45
223_C	257_K	0.899	0.45
52_E	55_G	0.899	0.45
200_G	223_C	0.898	0.45
331_H	376_T	0.893	0.44
225_Q	378_T	0.890	0.44
298_I	370_D	0.890	0.44
369_V	383_A	0.890	0.44
225_Q	254_F	0.887	0.44
147_E	151_S	0.881	0.44
67_Q	70_F	0.881	0.44
65_Q	68_P	0.879	0.43
328_I	446_N	0.877	0.43
64_G	67_Q	0.876	0.43
53_L	57_V	0.875	0.43
419_A	423_V	0.870	0.43
412_F	415_P	0.869	0.43
117_W	121_H	0.866	0.42
107_D	110_K	0.864	0.42
271_R	396_S	0.862	0.42
263_Q	454_N	0.862	0.42
234_A	238_V	0.861	0.42
61_I	66_I	0.859	0.42
66_I	71_E	0.859	0.42
201_T	224_L	0.858	0.42
271_R	304_Q	0.858	0.42
304_Q	381_L	0.855	0.42
87_G	91_L	0.852	0.41
61_I	65_Q	0.852	0.41
143_K	326_I	0.851	0.41
48_E	65_Q	0.850	0.41
55_G	70_F	0.848	0.41
414_Q	425_V	0.839	0.40
226_H	375_Q	0.836	0.40
71_E	78_V	0.836	0.40
70_F	90_I	0.833	0.40
53_L	61_I	0.833	0.40
79_K	85_V	0.832	0.40
109_E	112_A	0.831	0.40
234_A	237_P	0.830	0.40
362_L	366_L	0.830	0.40
51_P	70_F	0.830	0.40
48_E	57_V	0.826	0.40
164_D	167_F	0.825	0.39
138_Q	160_P	0.825	0.39
219_A	383_A	0.823	0.39
121_H	128_I	0.821	0.39
86_K	96_L	0.815	0.39
103_Y	111_T	0.815	0.39
76_N	79_K	0.814	0.39
373_V	396_S	0.813	0.39
173_K	199_V	0.812	0.39
376_T	396_S	0.810	0.38
381_L	408_G	0.808	0.38
326_I	460_L	0.805	0.38
47_M	55_G	0.805	0.38
186_D	190_E	0.803	0.38
162_F	167_F	0.800	0.38
381_L	384_M	0.798	0.38
223_C	390_V	0.795	0.37
329_K	332_P	0.793	0.37
372_A	375_Q	0.792	0.37
276_F	385_L	0.785	0.37
244_A	265_L	0.785	0.37
123_C	130_K	0.785	0.37
383_A	388_K	0.784	0.37
52_E	58_D	0.781	0.36
225_Q	231_G	0.780	0.36
166_A	169_D	0.779	0.36
228_A	454_N	0.778	0.36
174_D	178_F	0.775	0.36
71_E	98_F	0.775	0.36
231_G	329_K	0.775	0.36
201_T	383_A	0.772	0.36
70_F	423_V	0.772	0.36
458_A	462_A	0.770	0.36
221_S	333_W	0.767	0.35
228_A	231_G	0.765	0.35
439_R	446_N	0.763	0.35
135_D	160_P	0.763	0.35
224_L	359_E	0.759	0.35
415_P	418_L	0.759	0.35
230_M	269_H	0.758	0.35
226_H	270_P	0.757	0.35
171_L	176_P	0.755	0.35
351_Q	354_R	0.752	0.34
353_C	411_M	0.751	0.34
66_I	81_N	0.750	0.34
327_I	354_R	0.748	0.34
52_E	57_V	0.748	0.34
63_E	103_Y	0.747	0.34
224_L	250_E	0.746	0.34
226_H	379_V	0.745	0.34
54_F	57_V	0.745	0.34
123_C	134_A	0.744	0.34
182_I	188_L	0.744	0.34
305_P	376_T	0.743	0.34
306_F	408_G	0.742	0.34
90_I	104_Y	0.741	0.34
117_W	120_P	0.740	0.34
376_T	381_L	0.739	0.34
76_N	107_D	0.739	0.34
128_I	132_E	0.738	0.34
47_M	56_S	0.737	0.33
89_V	101_E	0.737	0.33
302_A	453_T	0.736	0.33
378_T	382_E	0.736	0.33
124_D	127_V	0.736	0.33
274_Q	330_P	0.735	0.33
53_L	58_D	0.730	0.33
106_F	116_R	0.730	0.33
154_A	243_Q	0.728	0.33
355_V	359_E	0.725	0.33
181_A	185_V	0.721	0.32
227_G	378_T	0.720	0.32
127_V	133_I	0.719	0.32
304_Q	377_S	0.716	0.32
64_G	91_L	0.716	0.32
58_D	69_F	0.716	0.32
247_G	378_T	0.715	0.32
235_F	239_F	0.714	0.32
213_M	362_L	0.714	0.32
227_G	331_H	0.714	0.32
329_K	334_E	0.713	0.32
59_Q	65_Q	0.713	0.32
140_G	201_T	0.712	0.32
373_V	391_L	0.711	0.32
89_V	114_L	0.711	0.32
225_Q	307_S	0.711	0.32
378_T	400_S	0.710	0.32
268_G	377_S	0.710	0.32
124_D	133_I	0.708	0.32
307_S	329_K	0.707	0.32
227_G	304_Q	0.703	0.31
394_K	403_Y	0.702	0.31
65_Q	72_E	0.701	0.31
96_L	100_N	0.698	0.31
326_I	441_A	0.697	0.31
76_N	115_A	0.696	0.31
62_D	71_E	0.696	0.31
127_V	130_K	0.695	0.31
448_P	461_K	0.694	0.31
70_F	74_I	0.693	0.31
53_L	59_Q	0.692	0.31
329_K	361_E	0.689	0.30
333_W	392_I	0.689	0.30
108_P	115_A	0.688	0.30
100_N	104_Y	0.688	0.30
305_P	385_L	0.688	0.30
108_P	422_L	0.687	0.30
116_R	122_Y	0.685	0.30
67_Q	72_E	0.685	0.30
225_Q	228_A	0.685	0.30
223_C	363_Y	0.684	0.30
227_G	269_H	0.681	0.30
76_N	95_Y	0.681	0.30
308_E	399_R	0.680	0.30
436_E	439_R	0.677	0.30
251_A	366_L	0.675	0.30
416_D	419_A	0.674	0.29
331_H	374_T	0.672	0.29
271_R	382_E	0.671	0.29
190_E	193_K	0.669	0.29
188_L	191_Q	0.669	0.29
198_I	209_V	0.668	0.29
394_K	407_L	0.667	0.29
212_L	330_P	0.666	0.29
254_F	269_H	0.666	0.29
306_F	409_D	0.665	0.29
94_D	117_W	0.664	0.29
225_Q	232_D	0.661	0.29
323_Q	352_A	0.659	0.29
148_T	155_P	0.659	0.29
95_Y	99_S	0.659	0.29
280_P	364_D	0.658	0.28
417_E	434_K	0.656	0.28
424_E	428_S	0.653	0.28
231_G	382_E	0.652	0.28
442_F	446_N	0.652	0.28
300_L	307_S	0.649	0.28
119_L	122_Y	0.645	0.28
51_P	55_G	0.644	0.28
198_I	221_S	0.642	0.28
76_N	80_T	0.642	0.28
334_E	381_L	0.636	0.27
175_I	178_F	0.634	0.27
414_Q	418_L	0.633	0.27
64_G	102_N	0.633	0.27
51_P	64_G	0.633	0.27
54_F	68_P	0.632	0.27
227_G	382_E	0.632	0.27
87_G	95_Y	0.631	0.27
396_S	400_S	0.630	0.27
228_A	250_E	0.629	0.27
173_K	178_F	0.627	0.27
126_P	130_K	0.627	0.27
246_F	304_Q	0.627	0.27
435_A	442_F	0.626	0.27
307_S	363_Y	0.626	0.27
61_I	122_Y	0.625	0.27
47_M	54_F	0.624	0.26
62_D	76_N	0.623	0.26
125_L	131_R	0.622	0.26
233_E	238_V	0.622	0.26
198_I	213_M	0.622	0.26
62_D	66_I	0.622	0.26
64_G	128_I	0.621	0.26
218_G	270_P	0.621	0.26
69_F	110_K	0.620	0.26
230_M	245_V	0.619	0.26
225_Q	304_Q	0.617	0.26
86_K	90_I	0.616	0.26
269_H	395_S	0.616	0.26
223_C	272_F	0.615	0.26
55_G	69_F	0.614	0.26
138_Q	307_S	0.614	0.26
223_C	250_E	0.614	0.26
266_V	456_L	0.613	0.26
229_L	394_K	0.612	0.26
62_D	67_Q	0.612	0.26
369_V	372_A	0.612	0.26
299_V	324_L	0.611	0.26
126_P	461_K	0.608	0.26
128_I	131_R	0.608	0.26
200_G	305_P	0.607	0.25
343_Y	347_A	0.607	0.25
176_P	182_I	0.605	0.25
201_T	335_I	0.605	0.25
190_E	194_I	0.602	0.25
439_R	442_F	0.602	0.25
82_D	91_L	0.602	0.25
121_H	127_V	0.601	0.25
273_D	450_A	0.601	0.25
348_K	351_Q	0.600	0.25
48_E	55_G	0.600	0.25
201_T	372_A	0.600	0.25
75_Q	78_V	0.599	0.25
127_V	320_D	0.599	0.25
343_Y	346_A	0.597	0.25
62_D	73_R	0.594	0.25
54_F	67_Q	0.594	0.25
187_A	191_Q	0.592	0.25
272_F	362_L	0.591	0.25
301_I	395_S	0.588	0.24
378_T	396_S	0.587	0.24
234_A	239_F	0.586	0.24
55_G	83_E	0.585	0.24
228_A	243_Q	0.585	0.24
66_I	92_H	0.584	0.24
208_R	211_A	0.582	0.24
363_Y	381_L	0.580	0.24
247_G	305_P	0.580	0.24
84_P	152_L	0.578	0.24
63_E	73_R	0.577	0.24
75_Q	414_Q	0.577	0.24
269_H	272_F	0.577	0.24
324_L	357_K	0.577	0.24
178_F	182_I	0.577	0.24
57_V	61_I	0.576	0.24
201_T	231_G	0.575	0.24
92_H	261_P	0.575	0.24
328_I	379_V	0.575	0.24
144_Q	400_S	0.571	0.24
106_F	111_T	0.569	0.23
175_I	181_A	0.567	0.23
363_Y	392_I	0.565	0.23
95_Y	100_N	0.565	0.23
269_H	385_L	0.565	0.23
227_G	249_Y	0.564	0.23
384_M	391_L	0.563	0.23
224_L	376_T	0.561	0.23
208_R	357_K	0.560	0.23
230_M	272_F	0.558	0.23
221_S	225_Q	0.558	0.23
103_Y	106_F	0.558	0.23
54_F	66_I	0.557	0.23
302_A	329_K	0.556	0.23
48_E	63_E	0.554	0.23
117_W	128_I	0.552	0.23
270_P	378_T	0.552	0.23
391_L	421_T	0.552	0.23
272_F	381_L	0.551	0.22
76_N	81_N	0.550	0.22
56_S	59_Q	0.550	0.22
54_F	59_Q	0.550	0.22
125_L	320_D	0.549	0.22
380_G	390_V	0.549	0.22
305_P	331_H	0.548	0.22
247_G	253_W	0.548	0.22
95_Y	102_N	0.547	0.22
225_Q	361_E	0.546	0.22
135_D	144_Q	0.545	0.22
85_V	103_Y	0.544	0.22
67_Q	80_T	0.543	0.22
384_M	392_I	0.542	0.22
228_A	395_S	0.542	0.22
148_T	154_A	0.542	0.22
375_Q	381_L	0.541	0.22
68_P	75_Q	0.540	0.22
323_Q	423_V	0.538	0.22
77_I	98_F	0.538	0.22
269_H	305_P	0.537	0.22
200_G	406_S	0.537	0.22
383_A	386_F	0.537	0.22
66_I	80_T	0.536	0.22
254_F	380_G	0.536	0.22
77_I	113_V	0.535	0.22
50_E	59_Q	0.535	0.22
361_E	364_D	0.535	0.22
72_E	152_L	0.534	0.22
56_S	69_F	0.534	0.22
271_R	388_K	0.534	0.22
381_L	392_I	0.533	0.22
70_F	78_V	0.533	0.22
453_T	458_A	0.531	0.21
51_P	57_V	0.531	0.21
51_P	66_I	0.531	0.21
357_K	379_V	0.531	0.21
135_D	332_P	0.530	0.21
112_A	120_P	0.529	0.21
209_V	212_L	0.529	0.21
275_I	386_F	0.529	0.21
291_A	300_L	0.528	0.21
94_D	455_A	0.526	0.21
306_F	374_T	0.526	0.21
315_L	348_K	0.524	0.21
255_I	261_P	0.523	0.21
183_D	186_D	0.521	0.21
436_E	455_A	0.521	0.21
275_I	385_L	0.519	0.21
187_A	190_E	0.518	0.21
361_E	366_L	0.517	0.21
76_N	88_K	0.516	0.21
145_Y	458_A	0.516	0.21
68_P	89_V	0.515	0.21
277_N	363_Y	0.515	0.21
419_A	450_A	0.515	0.21
71_E	77_I	0.515	0.21
392_I	407_L	0.513	0.21
196_A	381_L	0.513	0.21
97_R	297_K	0.512	0.21
379_V	386_F	0.509	0.20
47_M	58_D	0.509	0.20
198_I	461_K	0.509	0.20
144_Q	363_Y	0.508	0.20
110_K	115_A	0.507	0.20
246_F	378_T	0.507	0.20
194_I	217_K	0.505	0.20
318_L	388_K	0.503	0.20
270_P	381_L	0.503	0.20
227_G	377_S	0.500	0.20
199_V	366_L	0.500	0.20
57_V	69_F	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l7iA	4	0.7553	100	0.463	Contact Map
1vgvA	2	0.7342	99.8	0.778	Contact Map
3dzcA	2	0.7236	99.8	0.791	Contact Map
4nesA	2	0.7068	99.7	0.795	Contact Map
1v4vA	2	0.7321	99.7	0.799	Contact Map
4hwgA	5	0.7363	99.7	0.809	Contact Map
3ot5A	2	0.7089	99.6	0.81	Contact Map
4fkzA	2	0.7384	99.6	0.816	Contact Map
3okpA	1	0.6983	99.5	0.828	Contact Map
2jjmA	4	0.6709	99.4	0.84	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.