GERQ - BACSU - GREMLIN Contacts

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GERQ - Spore coat protein GerQ

UniProt:	P39620	Sequences: MKPKKNQYQQMQAFDNMQGYQPQFGANPYPQQGQGSQMQTMGMQPMMPMQQGQQGQQGQQGFGFPGQQQGGGFQIPSGPTPSGPGQSVPGMLPVEESYIENILRLNRGKTATIYMTFENSKEWGSKIFRGVIEAAGRDHIIISDPKSGTRYLLLTIYLDYITFDEEIAYTYPYSMASYSPR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	181 (150)
Sequences:	115 (108)
Seq/√Len:	8.8

BACSU - GERQ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
120_S	125_S	4.750	0.99
115_M	153_L	4.612	0.99
96_E	177_S	3.985	0.98
178_Y	181_R	3.892	0.98
134_A	150_R	3.547	0.96
140_I	154_L	3.389	0.95
113_I	142_I	3.325	0.94
120_S	124_G	2.777	0.86
115_M	154_L	2.637	0.83
120_S	123_W	2.567	0.81
140_I	158_L	2.305	0.73
132_I	152_L	2.302	0.73
115_M	158_L	2.189	0.69
158_L	161_I	2.075	0.65
119_N	125_S	1.971	0.61
153_L	158_L	1.905	0.58
76_P	167_I	1.815	0.54
114_Y	119_N	1.789	0.53
119_N	123_W	1.729	0.50
107_R	154_L	1.672	0.48
143_S	148_G	1.665	0.48
122_E	129_R	1.663	0.47
156_I	167_I	1.635	0.46
119_N	124_G	1.628	0.46
90_G	166_E	1.610	0.45
107_R	167_I	1.590	0.44
49_M	127_I	1.504	0.41
84_P	161_I	1.494	0.40
52_G	58_G	1.491	0.40
116_T	159_D	1.428	0.38
113_I	117_F	1.408	0.37
87_S	131_V	1.389	0.36
123_W	126_K	1.387	0.36
121_K	142_I	1.382	0.36
140_I	153_L	1.362	0.35
170_T	173_Y	1.347	0.34
61_G	70_G	1.346	0.34
127_I	164_D	1.333	0.34
143_S	150_R	1.326	0.34
144_D	149_T	1.314	0.33
90_G	107_R	1.295	0.32
121_K	151_Y	1.291	0.32
129_R	164_D	1.242	0.30
165_E	168_A	1.223	0.30
112_T	150_R	1.191	0.29
63_G	88_V	1.186	0.28
131_V	166_E	1.181	0.28
126_K	150_R	1.178	0.28
146_K	166_E	1.172	0.28
96_E	155_T	1.146	0.27
96_E	149_T	1.143	0.27
154_L	158_L	1.137	0.27
145_P	148_G	1.136	0.27
118_E	124_G	1.101	0.26
126_K	143_S	1.097	0.25
88_V	94_V	1.087	0.25
33_G	36_S	1.086	0.25
99_I	117_F	1.058	0.24
157_Y	166_E	1.055	0.24
129_R	176_A	1.053	0.24
115_M	140_I	1.050	0.24
42_G	88_V	1.049	0.24
35_G	176_A	1.042	0.24
73_F	77_S	1.034	0.23
121_K	170_T	1.027	0.23
150_R	166_E	1.025	0.23
115_M	172_P	1.023	0.23
111_A	172_P	1.019	0.23
48_P	62_F	0.996	0.22
49_M	60_Q	0.991	0.22
32_Q	129_R	0.990	0.22
113_I	157_Y	0.979	0.22
113_I	146_K	0.964	0.21
99_I	155_T	0.960	0.21
87_S	168_A	0.951	0.21
140_I	161_I	0.945	0.21
110_T	131_V	0.942	0.21
72_G	78_G	0.934	0.20
55_G	64_F	0.928	0.20
140_I	164_D	0.922	0.20
156_I	166_E	0.918	0.20
94_V	167_I	0.915	0.20
40_T	80_T	0.908	0.20
69_Q	80_T	0.908	0.20
41_M	57_Q	0.897	0.19
117_F	128_F	0.895	0.19
156_I	171_Y	0.889	0.19
122_E	128_F	0.888	0.19
140_I	149_T	0.877	0.19
112_T	147_S	0.877	0.19
93_P	99_I	0.872	0.19
88_V	141_I	0.872	0.19
89_P	154_L	0.870	0.19
111_A	114_Y	0.870	0.19
126_K	134_A	0.868	0.19
69_Q	122_E	0.863	0.19
107_R	173_Y	0.842	0.18
114_Y	164_D	0.835	0.18
40_T	48_P	0.827	0.18
34_Q	37_Q	0.824	0.18
96_E	179_S	0.822	0.17
114_Y	160_Y	0.815	0.17
50_Q	168_A	0.811	0.17
122_E	127_I	0.804	0.17
86_Q	89_P	0.802	0.17
118_E	159_D	0.802	0.17
62_F	65_P	0.800	0.17
50_Q	66_G	0.800	0.17
83_G	127_I	0.799	0.17
96_E	156_I	0.793	0.17
98_Y	121_K	0.792	0.17
119_N	122_E	0.791	0.17
85_G	176_A	0.788	0.17
142_I	146_K	0.766	0.16
69_Q	78_G	0.765	0.16
116_T	125_S	0.764	0.16
110_T	168_A	0.761	0.16
67_Q	79_P	0.761	0.16
111_A	149_T	0.760	0.16
42_G	65_P	0.759	0.16
175_M	180_P	0.756	0.16
160_Y	172_P	0.756	0.16
143_S	160_Y	0.752	0.16
39_Q	155_T	0.747	0.16
66_G	177_S	0.746	0.16
116_T	124_G	0.746	0.16
118_E	123_W	0.745	0.16
111_A	151_Y	0.739	0.16
103_L	152_L	0.720	0.15
32_Q	35_G	0.718	0.15
76_P	151_Y	0.716	0.15
168_A	174_S	0.714	0.15
174_S	177_S	0.713	0.15
119_N	157_Y	0.708	0.15
54_Q	62_F	0.706	0.15
54_Q	64_F	0.705	0.15
33_G	38_M	0.704	0.15
152_L	161_I	0.702	0.15
91_M	113_I	0.701	0.15
111_A	157_Y	0.700	0.15
34_Q	41_M	0.699	0.15
68_Q	79_P	0.696	0.15
42_G	48_P	0.695	0.15
86_Q	173_Y	0.694	0.15
117_F	157_Y	0.684	0.14
98_Y	144_D	0.682	0.14
153_L	178_Y	0.677	0.14
114_Y	127_I	0.674	0.14
99_I	105_L	0.672	0.14
127_I	147_S	0.671	0.14
63_G	86_Q	0.668	0.14
94_V	107_R	0.662	0.14
34_Q	38_M	0.660	0.14
98_Y	160_Y	0.658	0.14
72_G	76_P	0.658	0.14
37_Q	165_E	0.653	0.14
118_E	125_S	0.649	0.14
49_M	85_G	0.648	0.14
133_E	155_T	0.641	0.13
123_W	128_F	0.641	0.13
111_A	158_L	0.641	0.13
114_Y	157_Y	0.634	0.13
53_Q	59_Q	0.630	0.13
123_W	127_I	0.628	0.13
114_Y	141_I	0.624	0.13
33_G	37_Q	0.622	0.13
61_G	68_Q	0.614	0.13
131_V	175_M	0.610	0.13
59_Q	67_Q	0.608	0.13
41_M	50_Q	0.608	0.13
52_G	74_Q	0.607	0.13
43_M	64_F	0.607	0.13
134_A	144_D	0.606	0.13
77_S	95_E	0.605	0.13
152_L	158_L	0.593	0.13
82_S	121_K	0.592	0.12
68_Q	78_G	0.589	0.12
55_G	59_Q	0.584	0.12
74_Q	167_I	0.580	0.12
62_F	66_G	0.579	0.12
99_I	181_R	0.579	0.12
129_R	168_A	0.576	0.12
115_M	160_Y	0.576	0.12
120_S	126_K	0.575	0.12
69_Q	77_S	0.575	0.12
61_G	141_I	0.575	0.12
114_Y	144_D	0.574	0.12
55_G	66_G	0.573	0.12
116_T	120_S	0.565	0.12
134_A	143_S	0.564	0.12
51_Q	56_Q	0.563	0.12
90_G	170_T	0.561	0.12
119_N	159_D	0.560	0.12
41_M	73_F	0.559	0.12
144_D	160_Y	0.557	0.12
89_P	98_Y	0.556	0.12
55_G	62_F	0.556	0.12
36_S	41_M	0.553	0.12
122_E	146_K	0.552	0.12
54_Q	57_Q	0.550	0.12
149_T	173_Y	0.548	0.12
129_R	162_T	0.545	0.12
79_P	87_S	0.545	0.12
44_Q	140_I	0.542	0.12
154_L	170_T	0.534	0.11
40_T	63_G	0.531	0.11
62_F	70_G	0.529	0.11
35_G	44_Q	0.529	0.11
74_Q	81_P	0.526	0.11
43_M	48_P	0.524	0.11
110_T	129_R	0.524	0.11
158_L	164_D	0.522	0.11
35_G	38_M	0.522	0.11
77_S	94_V	0.514	0.11
54_Q	73_F	0.514	0.11
80_T	86_Q	0.514	0.11
77_S	177_S	0.511	0.11
55_G	140_I	0.510	0.11
45_P	64_F	0.510	0.11
110_T	179_S	0.508	0.11
45_P	82_S	0.507	0.11
159_D	162_T	0.506	0.11
98_Y	131_V	0.506	0.11
121_K	168_A	0.504	0.11
142_I	162_T	0.500	0.11

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2z73A	2	0	92.5	0.934	Contact Map
4febA	3	0.1602	83	0.944	Contact Map
4b8cD	1	0.232	14.6	0.966	Contact Map
4m3kA	1	0.4088	9.8	0.969	Contact Map
3kw2A	2	0.4586	6	0.972	Contact Map
2pl3A	1	0.4917	5.8	0.972	Contact Map
1hzoA	1	0.4254	5.2	0.973	Contact Map
4x9cA	3	0.3204	5.2	0.973	Contact Map
2x7xA	2	0.3978	5.2	0.973	Contact Map
1bueA	1	0.3425	5.1	0.973	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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