GREMLIN Database
RODA - Rod shape-determining protein RodA
UniProt: P39604 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 393 (350)
Sequences: 8082 (5595)
Seq/√Len: 299.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
309_L331_T3.7741.00
13_Q308_R3.5521.00
309_L376_V3.3661.00
107_R110_R3.1991.00
180_V332_A3.1801.00
235_S238_N2.7671.00
24_F52_Y2.7651.00
98_V103_K2.7631.00
242_E245_N2.7411.00
19_I304_F2.6941.00
287_G295_C2.6791.00
67_L323_A2.6331.00
257_I287_G2.6021.00
81_G122_G2.5141.00
327_C376_V2.4941.00
62_L371_I2.4731.00
77_I122_G2.3471.00
20_F373_F2.3301.00
55_G370_L2.3301.00
19_I305_L2.2011.00
286_I298_V2.1551.00
90_I95_I2.0971.00
330_Y376_V2.0901.00
81_G119_M2.0761.00
283_F295_C2.0711.00
184_M328_V2.0661.00
160_V171_A2.0571.00
276_E279_T1.9871.00
358_F373_F1.9851.00
306_I335_V1.9691.00
59_I377_Y1.9581.00
40_Y46_I1.9431.00
43_T47_Q1.9271.00
100_K276_E1.9161.00
30_S286_I1.9161.00
87_I106_F1.8931.00
358_F369_T1.8611.00
237_S251_D1.8571.00
28_V45_W1.8331.00
311_V315_K1.8291.00
156_A178_V1.8241.00
30_S290_F1.8181.00
181_M329_G1.8171.00
107_R112_T1.7981.00
250_V351_V1.7441.00
243_D251_D1.7291.00
343_G349_M1.7151.00
71_E322_F1.7091.00
161_G165_M1.7071.00
87_I95_I1.6921.00
316_I379_A1.6911.00
330_Y372_G1.6911.00
267_I290_F1.6851.00
344_M351_V1.6701.00
338_T342_I1.6621.00
309_L327_C1.6381.00
49_I53_L1.6271.00
296_A300_I1.5971.00
228_K246_D1.5921.00
73_L76_Y1.5661.00
125_M326_F1.5611.00
33_A289_S1.5561.00
26_I286_I1.5481.00
28_V48_Q1.5411.00
116_S170_T1.5191.00
327_C379_A1.5091.00
131_I181_M1.5071.00
323_A379_A1.4921.00
24_F370_L1.4881.00
85_L119_M1.4841.00
299_V342_I1.4801.00
113_I118_F1.4771.00
79_I83_L1.4721.00
263_L293_I1.4681.00
283_F342_I1.4611.00
97_P107_R1.4591.00
88_L106_F1.4581.00
86_I90_I1.4491.00
204_S207_L1.4451.00
46_I49_I1.4441.00
173_I354_I1.4351.00
51_F363_G1.4001.00
83_L87_I1.3961.00
302_F338_T1.3951.00
313_I327_C1.3921.00
19_I301_M1.3901.00
286_I359_V1.3891.00
223_Q226_Q1.3821.00
34_A285_I1.3801.00
163_I174_C1.3801.00
97_P112_T1.3791.00
78_F159_P1.3691.00
26_I298_V1.3681.00
334_I369_T1.3571.00
82_I158_I1.3531.00
124_I329_G1.3521.00
76_Y80_I1.3461.00
320_N323_A1.3451.00
177_I333_L1.3451.00
58_A371_I1.3321.00
306_I331_T1.3311.00
306_I338_T1.3291.00
355_P365_S1.3271.00
123_L174_C1.3171.00
224_D227_I1.3171.00
30_S282_I1.3171.00
20_F370_L1.3121.00
59_I374_G1.3111.00
129_S133_K1.3031.00
181_M325_F1.2991.00
53_L57_V1.2951.00
378_N382_Q1.2891.00
250_V347_G1.2841.00
176_F336_I1.2801.00
262_I292_F1.2771.00
32_Y45_W1.2761.00
28_V49_I1.2611.00
292_F296_A1.2411.00
247_S251_D1.2401.00
242_E246_D1.2351.00
157_V161_G1.2271.00
224_D228_K1.2271.00
119_M159_P1.2221.00
227_I231_T1.2221.00
52_Y366_T1.2111.00
16_L305_L1.2051.00
281_F351_V1.2031.00
104_S116_S1.1991.00
23_F359_V1.1941.00
44_D278_T1.1891.00
312_L327_C1.1691.00
70_L375_I1.1651.00
57_V61_V1.1641.00
193_A197_G1.1571.00
46_I50_V1.1541.00
71_E129_S1.1541.00
87_I90_I1.1521.00
127_L178_V1.1491.00
67_L378_N1.1451.00
188_N191_L1.1441.00
253_A345_N1.1441.00
154_G158_I1.1421.00
127_L152_I1.1401.00
74_S129_S1.1241.00
222_I226_Q1.1191.00
54_L367_L1.1181.00
124_I177_I1.1171.00
44_D361_Y1.1161.00
15_D304_F1.1131.00
29_V267_I1.1091.00
242_E247_S1.1081.00
252_Q270_L1.1081.00
310_V331_T1.1041.00
88_L115_P1.1001.00
238_N242_E1.0991.00
128_A181_M1.0941.00
69_Q72_K1.0841.00
228_K231_T1.0811.00
333_L372_G1.0811.00
82_I159_P1.0801.00
16_L312_L1.0711.00
305_L373_F1.0701.00
12_Y17_I1.0631.00
117_E120_K1.0601.00
75_L79_I1.0591.00
63_L374_G1.0571.00
248_W275_P1.0511.00
299_V338_T1.0501.00
71_E132_G1.0491.00
259_S265_N1.0471.00
17_I377_Y1.0381.00
252_Q255_M1.0381.00
145_D148_L1.0321.00
377_Y380_S1.0291.00
274_V284_S1.0281.00
73_L77_I1.0221.00
337_H365_S1.0191.00
99_I112_T1.0171.00
326_F379_A1.0161.00
124_I333_L1.0111.00
254_I347_G1.0091.00
59_I62_L1.0061.00
331_T376_V1.0041.00
67_L320_N1.0021.00
298_V359_V0.9981.00
56_A60_T0.9911.00
248_W252_Q0.9871.00
262_I293_I0.9851.00
75_L126_M0.9761.00
18_F22_V0.9751.00
172_G176_F0.9741.00
118_F368_S0.9741.00
55_G366_T0.9731.00
312_L380_S0.9721.00
23_F305_L0.9691.00
164_L171_A0.9661.00
189_W193_A0.9601.00
76_Y79_I0.9601.00
66_D69_Q0.9581.00
47_Q51_F0.9541.00
130_V152_I0.9531.00
279_T361_Y0.9511.00
67_L379_A0.9501.00
307_Y311_V0.9501.00
170_T355_P0.9481.00
195_I199_G0.9441.00
286_I290_F0.9441.00
237_S254_I0.9431.00
43_T46_I0.9381.00
221_G224_D0.9381.00
313_I331_T0.9371.00
48_Q51_F0.9341.00
125_M322_F0.9331.00
63_L378_N0.9311.00
255_M270_L0.9251.00
169_G352_T0.9201.00
328_V332_A0.9201.00
121_V375_I0.9191.00
22_V301_M0.9171.00
253_A284_S0.9171.00
201_L204_S0.9151.00
47_Q50_V0.9131.00
232_S246_D0.9111.00
26_I301_M0.9081.00
169_G344_M0.9071.00
104_S169_G0.9001.00
121_V371_I0.8971.00
202_L206_I0.8971.00
337_H355_P0.8971.00
85_L162_L0.8931.00
321_R324_S0.8891.00
74_S322_F0.8881.00
31_I282_I0.8881.00
31_I34_A0.8861.00
121_V368_S0.8851.00
334_I338_T0.8851.00
63_L381_V0.8841.00
15_D308_R0.8841.00
175_M179_L0.8821.00
102_A166_Q0.8811.00
32_Y42_N0.8801.00
62_L70_L0.8771.00
183_F189_W0.8741.00
313_I328_V0.8741.00
47_Q361_Y0.8741.00
69_Q73_L0.8721.00
89_K165_M0.8711.00
194_I198_S0.8671.00
204_S208_L0.8671.00
78_F82_I0.8661.00
266_G289_S0.8661.00
26_I30_S0.8611.00
356_L359_V0.8571.00
326_F375_I0.8571.00
192_I196_A0.8541.00
147_H151_K0.8521.00
123_L156_A0.8471.00
236_A247_S0.8471.00
59_I373_F0.8461.00
160_V175_M0.8461.00
344_M352_T0.8461.00
163_I170_T0.8421.00
365_S369_T0.8421.00
277_S285_I0.8411.00
78_F126_M0.8381.00
126_M155_V0.8331.00
84_S88_L0.8321.00
131_I185_S0.8321.00
376_V379_A0.8281.00
303_F307_Y0.8281.00
168_A226_Q0.8261.00
250_V253_A0.8261.00
121_V372_G0.8251.00
61_V65_F0.8251.00
228_K232_S0.8221.00
274_V277_S0.8221.00
300_I304_F0.8201.00
124_I330_Y0.8191.00
55_G374_G0.8171.00
107_R111_I0.8161.00
167_D170_T0.8161.00
20_F305_L0.8141.00
278_T361_Y0.8131.00
21_G25_I0.8091.00
55_G367_L0.8071.00
23_F298_V0.8051.00
343_G348_I0.8041.00
150_L154_G0.8041.00
236_A251_D0.8041.00
45_W49_I0.7981.00
74_S122_G0.7981.00
134_A151_K0.7971.00
283_F298_V0.7971.00
33_A266_G0.7910.99
232_S238_N0.7900.99
374_G378_N0.7870.99
39_Q44_D0.7820.99
124_I181_M0.7800.99
302_F356_L0.7790.99
42_N45_W0.7760.99
25_I29_V0.7750.99
295_C346_I0.7750.99
339_F348_I0.7700.99
82_I86_I0.7690.99
75_L129_S0.7670.99
88_L103_K0.7660.99
249_Q253_A0.7660.99
184_M332_A0.7650.99
96_A103_K0.7630.99
68_E320_N0.7620.99
32_Y268_S0.7620.99
51_F367_L0.7590.99
322_F326_F0.7590.99
203_I207_L0.7570.99
50_V53_L0.7550.99
342_I346_I0.7550.99
253_A281_F0.7540.99
375_I379_A0.7530.99
177_I180_V0.7520.99
344_M349_M0.7520.99
42_N46_I0.7510.99
378_N381_V0.7450.99
148_L151_K0.7420.99
168_A172_G0.7410.99
60_T64_Y0.7350.99
200_I204_S0.7350.99
15_D19_I0.7340.99
308_R311_V0.7330.99
281_F345_N0.7330.99
191_L195_I0.7280.99
149_L153_A0.7280.99
257_I346_I0.7280.99
113_I368_S0.7270.99
295_C299_V0.7260.99
58_A367_L0.7260.99
327_C331_T0.7250.99
128_A322_F0.7250.99
59_I370_L0.7240.99
151_K154_G0.7230.99
198_S202_L0.7220.99
152_I178_V0.7180.99
56_A59_I0.7170.99
31_I48_Q0.7140.99
24_F56_A0.7130.99
119_M122_G0.7130.99
180_V336_I0.7120.99
65_F70_L0.7110.99
128_A132_G0.7100.99
255_M258_G0.7100.99
127_L156_A0.7100.99
131_I152_I0.7060.99
86_I89_K0.7040.99
201_L205_L0.7030.99
282_I359_V0.7020.99
323_A326_F0.7020.99
176_F180_V0.7020.99
202_L205_L0.7000.99
19_I308_R0.7000.99
285_I289_S0.6950.99
369_T372_G0.6930.99
250_V281_F0.6910.99
84_S113_I0.6890.99
191_L194_I0.6840.99
316_I320_N0.6830.98
225_Y228_K0.6830.98
283_F356_L0.6830.98
39_Q43_T0.6750.98
86_I162_L0.6710.98
168_A223_Q0.6680.98
305_L334_I0.6660.98
156_A160_V0.6660.98
310_V332_A0.6620.98
113_I364_S0.6610.98
67_L326_F0.6610.98
134_A148_L0.6600.98
290_F294_G0.6590.98
66_D323_A0.6580.98
130_V155_V0.6560.98
79_I82_I0.6560.98
207_L227_I0.6530.98
305_L309_L0.6530.98
11_F381_V0.6530.98
300_I303_F0.6510.98
342_I356_L0.6510.98
235_S247_S0.6500.98
254_I258_G0.6490.98
282_I286_I0.6490.98
118_F371_I0.6470.98
197_G201_L0.6470.98
316_I323_A0.6460.98
36_Q271_K0.6460.98
124_I326_F0.6460.98
149_L182_V0.6450.98
232_S247_S0.6440.98
84_S118_F0.6440.98
61_V64_Y0.6410.98
332_A336_I0.6390.98
364_S368_S0.6380.98
340_Q349_M0.6370.98
97_P100_K0.6370.98
199_G203_I0.6340.98
193_A196_A0.6340.98
271_K289_S0.6290.97
58_A61_V0.6270.97
238_N247_S0.6260.97
298_V302_F0.6240.97
321_R325_F0.6220.97
237_S247_S0.6220.97
316_I319_F0.6200.97
252_Q275_P0.6190.97
68_E71_E0.6180.97
232_S236_A0.6130.97
304_F308_R0.6130.97
64_Y381_V0.6120.97
231_T235_S0.6090.97
146_I150_L0.6090.97
89_K103_K0.6090.97
302_F358_F0.6080.97
55_G58_A0.6060.97
230_V234_V0.6030.97
131_I325_F0.6020.97
373_F376_V0.6020.97
309_L373_F0.6000.97
369_T373_F0.5990.97
190_K194_I0.5990.97
48_Q52_Y0.5980.97
243_D247_S0.5970.97
330_Y379_A0.5970.97
122_G126_M0.5970.97
251_D255_M0.5930.96
44_D47_Q0.5920.96
274_V285_I0.5910.96
100_K278_T0.5890.96
179_L196_A0.5880.96
100_K103_K0.5870.96
85_L88_L0.5870.96
368_S372_G0.5840.96
108_I112_T0.5830.96
315_K380_S0.5820.96
312_L316_I0.5800.96
71_E320_N0.5790.96
14_G18_F0.5780.96
97_P103_K0.5780.96
131_I182_V0.5770.96
316_I327_C0.5760.96
310_V314_D0.5740.96
48_Q366_T0.5720.96
19_I300_I0.5690.95
104_S354_I0.5680.95
283_F299_V0.5680.95
174_C178_V0.5670.95
341_N345_N0.5660.95
128_A329_G0.5660.95
185_S325_F0.5650.95
250_V254_I0.5630.95
231_T238_N0.5620.95
340_Q344_M0.5620.95
28_V52_Y0.5620.95
125_M375_I0.5620.95
128_A326_F0.5620.95
126_M130_V0.5610.95
134_A137_K0.5610.95
129_S322_F0.5590.95
51_F55_G0.5590.95
207_L231_T0.5580.95
54_L58_A0.5580.95
16_L308_R0.5570.95
104_S170_T0.5560.95
40_Y43_T0.5560.95
309_L312_L0.5540.95
81_G118_F0.5540.95
54_L57_V0.5530.95
67_L382_Q0.5530.95
104_S166_Q0.5520.95
114_Q117_E0.5510.95
22_V25_I0.5490.94
32_Y36_Q0.5470.94
88_L166_Q0.5460.94
232_S242_E0.5440.94
104_S352_T0.5430.94
339_F349_M0.5420.94
146_I191_L0.5410.94
99_I103_K0.5400.94
232_S250_V0.5400.94
335_V338_T0.5370.94
266_G288_E0.5370.94
370_L374_G0.5350.94
71_E133_K0.5330.94
297_I300_I0.5320.94
137_K147_H0.5320.94
63_L377_Y0.5310.93
297_I301_M0.5300.93
339_F343_G0.5300.93
253_A274_V0.5300.93
228_K238_N0.5290.93
177_I181_M0.5260.93
183_F192_I0.5260.93
187_I192_I0.5250.93
128_A325_F0.5230.93
116_S166_Q0.5210.93
305_L376_V0.5200.93
26_I359_V0.5200.93
13_Q380_S0.5200.93
51_F361_Y0.5180.93
85_L163_I0.5180.93
330_Y333_L0.5180.93
251_D254_I0.5170.93
78_F155_V0.5170.93
258_G292_F0.5130.92
233_W346_I0.5120.92
108_I111_I0.5110.92
345_N351_V0.5090.92
268_S289_S0.5080.92
163_I171_A0.5080.92
253_A346_I0.5070.92
135_N321_R0.5070.92
51_F54_L0.5060.92
99_I107_R0.5040.92
80_I122_G0.5040.92
19_I22_V0.5040.92
132_G322_F0.5030.92
208_L221_G0.5030.92
104_S174_C0.5030.92
380_S384_T0.5030.92
235_S242_E0.5000.91
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2l6wA 2 0.0916 6.8 0.974 Contact Map
3j01B 1 0.1323 4.6 0.976 Contact Map
3rceA 1 0.7735 4.5 0.976 Contact Map
2m8rA 1 0.0967 4.2 0.977 Contact Map
3dinD 1 0.1374 3.4 0.978 Contact Map
4qncA 2 0.1934 3.4 0.978 Contact Map
4ev6A 3 0.1603 3.4 0.978 Contact Map
3dl8C 1 0.0891 3.4 0.978 Contact Map
4i0uA 4 0.1552 3.3 0.978 Contact Map
3wu2Z 1 0.1221 3.2 0.978 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.011 seconds.