YWBG - BACSU - GREMLIN Contacts

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YWBG - Uncharacterized protein YwbG

UniProt:	P39590	Sequences: MFIGIVSLFLTVLVYLGAKKVYQRFPRVYTSPLLVTPAVLVGLLLLVNVPYESYNLGGGLLTDMLQPATVAFAIPLYKYFPVLKKYAVEIILNVAVGSCIAIISTALIAKWLHLGTGLIDSLVPRSVTTPIAMNVSEMIGGMPAVTAVFVILTALLGTVIGPMVIRYFRIDNEIARGVLLGTSAHGAGTSKAFELSSVSGTISSVSMILAAIMTLCAAPFLLSFM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	225 (219)
Sequences:	1920 (1343)
Seq/√Len:	90.7

ECOLI - YOHK
BACSU - YWBG YXAC LRGB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
131_I	211_A	5.586	1.00
132_A	150_V	4.987	1.00
134_N	137_E	4.147	1.00
136_S	146_T	3.726	1.00
124_P	136_S	3.207	1.00
161_G	180_L	3.084	1.00
180_L	192_A	3.080	1.00
11_T	54_Y	3.012	1.00
173_E	196_S	2.858	1.00
157_G	184_A	2.753	1.00
14_V	39_V	2.663	1.00
189_T	203_S	2.498	1.00
127_V	135_V	2.415	1.00
166_R	176_R	2.338	1.00
191_K	194_E	2.335	1.00
109_A	114_L	2.251	1.00
161_G	165_I	2.086	1.00
109_A	119_I	2.081	1.00
14_V	36_T	1.933	1.00
18_A	35_V	1.913	1.00
120_D	139_I	1.890	1.00
196_S	199_S	1.877	1.00
20_K	24_R	1.875	1.00
165_I	180_L	1.857	1.00
176_R	199_S	1.846	1.00
35_V	39_V	1.843	1.00
55_N	62_T	1.777	1.00
96_V	100_I	1.770	1.00
18_A	36_T	1.767	1.00
121_S	141_G	1.750	1.00
121_S	142_M	1.722	1.00
98_S	210_A	1.705	1.00
81_P	85_K	1.696	1.00
42_G	46_L	1.668	1.00
14_V	40_L	1.663	1.00
14_V	43_L	1.653	1.00
42_G	45_L	1.626	1.00
17_G	21_V	1.596	1.00
86_Y	89_E	1.571	1.00
178_V	182_T	1.560	1.00
205_V	211_A	1.546	1.00
106_A	123_V	1.546	1.00
109_A	122_L	1.534	1.00
126_S	153_T	1.534	1.00
14_V	18_A	1.526	1.00
7_S	49_V	1.504	1.00
107_L	111_W	1.504	1.00
105_T	153_T	1.503	1.00
116_T	120_D	1.483	1.00
128_T	131_I	1.474	1.00
163_M	167_Y	1.460	1.00
95_A	213_M	1.436	0.99
55_N	58_G	1.434	0.99
55_N	59_G	1.418	0.99
43_L	47_V	1.410	0.99
127_V	131_I	1.382	0.99
130_P	134_N	1.381	0.99
38_A	42_G	1.350	0.99
178_V	206_S	1.347	0.99
87_A	91_I	1.322	0.99
98_S	102_I	1.319	0.99
17_G	39_V	1.319	0.99
124_P	146_T	1.311	0.99
178_V	202_I	1.297	0.99
56_L	59_G	1.295	0.99
20_K	25_F	1.294	0.99
13_L	17_G	1.291	0.99
69_T	74_I	1.268	0.99
135_V	214_T	1.253	0.98
107_L	110_K	1.252	0.98
80_F	84_K	1.231	0.98
44_L	51_Y	1.222	0.98
184_A	203_S	1.222	0.98
86_Y	202_I	1.221	0.98
125_R	153_T	1.221	0.98
17_G	20_K	1.211	0.98
22_Y	30_T	1.205	0.98
133_M	147_A	1.201	0.98
103_I	107_L	1.196	0.98
102_I	218_A	1.189	0.98
10_L	40_L	1.186	0.98
129_T	151_I	1.176	0.98
151_I	155_L	1.167	0.98
115_G	118_L	1.162	0.97
143_P	147_A	1.158	0.97
145_V	149_F	1.156	0.97
66_Q	130_P	1.151	0.97
173_E	199_S	1.149	0.97
22_Y	27_R	1.134	0.97
75_P	204_S	1.106	0.97
165_I	170_I	1.099	0.96
216_C	220_F	1.087	0.96
41_V	45_L	1.086	0.96
102_I	123_V	1.083	0.96
69_T	153_T	1.074	0.96
153_T	184_A	1.063	0.96
81_P	84_K	1.063	0.96
192_A	196_S	1.053	0.95
65_L	186_G	1.052	0.95
192_A	200_G	1.031	0.95
118_L	121_S	1.017	0.95
20_K	23_Q	1.012	0.94
78_K	197_S	1.002	0.94
204_S	208_I	0.992	0.94
25_F	30_T	0.974	0.93
97_G	182_T	0.970	0.93
7_S	57_G	0.969	0.93
158_T	187_A	0.967	0.93
133_M	136_S	0.965	0.93
133_M	143_P	0.961	0.93
98_S	214_T	0.958	0.93
65_L	130_P	0.955	0.92
185_H	188_G	0.954	0.92
193_F	201_T	0.951	0.92
106_A	119_I	0.948	0.92
102_I	217_A	0.948	0.92
53_S	58_G	0.948	0.92
19_K	23_Q	0.945	0.92
77_Y	80_F	0.940	0.92
88_V	91_I	0.933	0.92
87_A	151_I	0.932	0.92
182_T	210_A	0.922	0.91
21_V	35_V	0.916	0.91
189_T	200_G	0.911	0.91
94_V	210_A	0.893	0.90
146_T	150_V	0.892	0.90
31_S	35_V	0.887	0.89
174_I	202_I	0.882	0.89
155_L	187_A	0.880	0.89
186_G	204_S	0.877	0.89
157_G	203_S	0.875	0.89
147_A	150_V	0.874	0.89
123_V	222_L	0.871	0.89
121_S	146_T	0.864	0.88
16_L	20_K	0.863	0.88
154_A	157_G	0.860	0.88
76_L	219_P	0.848	0.87
33_L	187_A	0.845	0.87
30_T	35_V	0.845	0.87
31_S	34_L	0.841	0.87
90_I	178_V	0.839	0.87
45_L	48_N	0.837	0.87
153_T	156_L	0.834	0.86
118_L	142_M	0.834	0.86
193_F	200_G	0.832	0.86
160_I	163_M	0.832	0.86
176_R	195_L	0.826	0.86
105_T	125_R	0.826	0.86
22_Y	25_F	0.824	0.86
15_Y	19_K	0.816	0.85
110_K	119_I	0.813	0.85
50_P	53_S	0.808	0.85
7_S	58_G	0.807	0.84
57_G	124_P	0.806	0.84
51_Y	70_V	0.803	0.84
134_N	138_M	0.799	0.84
198_V	212_I	0.793	0.83
92_L	96_V	0.793	0.83
30_T	161_G	0.791	0.83
157_G	185_H	0.787	0.83
31_S	202_I	0.777	0.82
94_V	182_T	0.777	0.82
135_V	218_A	0.776	0.82
47_V	50_P	0.773	0.82
182_T	204_S	0.771	0.82
120_D	222_L	0.770	0.82
39_V	42_G	0.770	0.82
121_S	136_S	0.768	0.81
36_T	40_L	0.763	0.81
179_L	183_S	0.762	0.81
71_A	147_A	0.761	0.81
136_S	141_G	0.760	0.81
130_P	143_P	0.759	0.81
196_S	202_I	0.758	0.81
202_I	207_M	0.756	0.80
72_F	125_R	0.756	0.80
23_Q	26_P	0.755	0.80
44_L	49_V	0.754	0.80
81_P	96_V	0.753	0.80
203_S	206_S	0.751	0.80
120_D	141_G	0.751	0.80
139_I	218_A	0.751	0.80
53_S	56_L	0.749	0.80
36_T	39_V	0.745	0.79
93_N	202_I	0.742	0.79
105_T	108_I	0.739	0.79
172_N	175_A	0.736	0.79
122_L	149_F	0.729	0.78
101_A	104_S	0.726	0.78
86_Y	174_I	0.724	0.77
93_N	101_A	0.723	0.77
112_L	212_I	0.721	0.77
160_I	164_V	0.718	0.77
45_L	117_G	0.718	0.77
123_V	218_A	0.716	0.77
185_H	189_T	0.716	0.77
125_R	215_L	0.709	0.76
129_T	150_V	0.707	0.76
102_I	207_M	0.706	0.76
70_V	145_V	0.705	0.76
127_V	214_T	0.705	0.76
10_L	43_L	0.705	0.76
23_Q	27_R	0.704	0.75
128_T	211_A	0.701	0.75
79_Y	198_V	0.698	0.75
6_V	47_V	0.694	0.74
108_I	112_L	0.692	0.74
48_N	137_E	0.691	0.74
82_V	174_I	0.671	0.72
98_S	213_M	0.667	0.71
154_A	185_H	0.665	0.71
74_I	101_A	0.664	0.71
162_P	166_R	0.664	0.71
211_A	215_L	0.660	0.71
51_Y	148_V	0.659	0.71
215_L	218_A	0.658	0.70
55_N	60_L	0.657	0.70
70_V	75_P	0.655	0.70
25_F	28_V	0.654	0.70
34_L	159_V	0.651	0.70
82_V	202_I	0.649	0.69
153_T	185_H	0.649	0.69
86_Y	172_N	0.648	0.69
220_F	223_S	0.644	0.69
99_C	103_I	0.642	0.69
15_Y	22_Y	0.639	0.68
20_K	160_I	0.638	0.68
93_N	140_G	0.635	0.68
61_L	64_M	0.634	0.68
25_F	187_A	0.634	0.68
5_I	57_G	0.632	0.67
82_V	198_V	0.632	0.67
156_L	160_I	0.631	0.67
73_A	127_V	0.629	0.67
162_P	191_K	0.627	0.67
184_A	188_G	0.625	0.67
83_L	201_T	0.620	0.66
96_V	107_L	0.611	0.65
157_G	189_T	0.611	0.65
104_S	108_I	0.610	0.65
69_T	214_T	0.609	0.65
95_A	209_L	0.609	0.65
193_F	204_S	0.609	0.65
30_T	90_I	0.605	0.64
15_Y	172_N	0.604	0.64
12_V	16_L	0.602	0.64
186_G	189_T	0.602	0.64
22_Y	130_P	0.602	0.64
31_S	37_P	0.600	0.63
129_T	133_M	0.599	0.63
165_I	179_L	0.598	0.63
98_S	183_S	0.597	0.63
162_P	211_A	0.597	0.63
94_V	206_S	0.596	0.63
135_V	222_L	0.595	0.63
79_Y	133_M	0.593	0.62
207_M	211_A	0.593	0.62
11_T	186_G	0.591	0.62
138_M	208_I	0.589	0.62
103_I	106_A	0.589	0.62
186_G	194_E	0.582	0.61
99_C	167_Y	0.582	0.61
174_I	206_S	0.582	0.61
128_T	162_P	0.582	0.61
27_R	30_T	0.581	0.61
39_V	43_L	0.579	0.61
191_K	197_S	0.578	0.61
187_A	190_S	0.577	0.60
66_Q	125_R	0.574	0.60
135_V	215_L	0.572	0.60
191_K	195_L	0.572	0.60
101_A	179_L	0.571	0.60
74_I	205_V	0.570	0.59
99_C	108_I	0.569	0.59
83_L	202_I	0.566	0.59
131_I	135_V	0.564	0.59
184_A	217_A	0.563	0.59
191_K	203_S	0.561	0.58
37_P	129_T	0.559	0.58
20_K	26_P	0.559	0.58
47_V	52_E	0.557	0.58
165_I	169_R	0.555	0.57
7_S	93_N	0.554	0.57
60_L	122_L	0.554	0.57
122_L	190_S	0.553	0.57
100_I	104_S	0.553	0.57
17_G	25_F	0.553	0.57
10_L	13_L	0.552	0.57
165_I	219_P	0.551	0.57
203_S	210_A	0.550	0.57
91_I	164_V	0.548	0.56
60_L	99_C	0.548	0.56
72_F	189_T	0.546	0.56
107_L	117_G	0.544	0.56
39_V	140_G	0.542	0.56
19_K	125_R	0.541	0.56
206_S	215_L	0.538	0.55
195_L	199_S	0.538	0.55
83_L	92_L	0.538	0.55
17_G	43_L	0.537	0.55
21_V	30_T	0.536	0.55
5_I	16_L	0.534	0.55
109_A	145_V	0.533	0.54
26_P	115_G	0.532	0.54
72_F	193_F	0.532	0.54
48_N	166_R	0.532	0.54
129_T	146_T	0.530	0.54
110_K	116_T	0.528	0.54
37_P	64_M	0.525	0.53
48_N	52_E	0.524	0.53
8_L	61_L	0.523	0.53
65_L	75_P	0.521	0.53
177_G	189_T	0.520	0.53
176_R	209_L	0.520	0.53
72_F	89_E	0.519	0.53
94_V	121_S	0.515	0.52
108_I	114_L	0.512	0.52
158_T	190_S	0.508	0.51
95_A	217_A	0.506	0.51
22_Y	34_L	0.506	0.51
36_T	206_S	0.506	0.51
13_L	48_N	0.504	0.50
101_A	130_P	0.503	0.50
76_L	109_A	0.503	0.50
89_E	208_I	0.502	0.50
201_T	205_V	0.502	0.50
129_T	208_I	0.501	0.50
10_L	155_L	0.500	0.50

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zuxA	1	0.7422	95.1	0.912	Contact Map
4n7wA	2	0.72	94.1	0.917	Contact Map
4czbA	2	0.9733	55.3	0.946	Contact Map
4cz8A	2	0.9111	42.9	0.95	Contact Map
4bwzA	2	0.84	39	0.951	Contact Map
2a65A	2	0.3822	25.2	0.956	Contact Map
2zy9A	2	0.7911	14.2	0.96	Contact Map
3nd0A	2	0.9067	10.9	0.962	Contact Map
2ju0B	1	0.2311	8.6	0.964	Contact Map
4z7fA	2	0.3911	7.1	0.965	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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