YWBA - BACSU - GREMLIN Contacts

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YWBA - Putative permease IIC component YwbA

UniProt:	P39584	Sequences: MSTFTRVMEEKIMPVAGKIAGQRHLSALRDGIILTMPLIIIGSVFLILTSLPIPGYADFMASVFGNEWADKLGYPVNASFDIMAMIAAFGIAYRLAESYGVDALSAGAISIAAFLLATPFEVPFTPHGSTESIMVGGGIPITLLGSKGLFVAMLIALFSTEIYRYIIQKNIVFKMPDGVPPAVSKSFVALIPGFIIVLLVWLARLLIEMTPFQSLHNVVGDLLGTPLSILGGSLGGSLIAEFVQMLLWSCGIHGASIIGGIMAPIWYGAMDANRLAFQAGEALPSIFTTQFFQIWINVGGSGATLALVLTMLVRSRSKQMKQLGRLGIGPALFNINEPIIFGMPIVMNPLLIVPFIIAPLLTITATYIGMSTGLVARPAGIAVPWTMPPLISGYLATGGKVSGAVMQLVNLLITCAIYYPFFRIWDHQKWREESAVESGDKNVM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	444 (414)
Sequences:	2130 (1550)
Seq/√Len:	76.2

ECOLI - PTQC
BACSU - YWBA PTJC PTEC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
89_F	107_G	4.800	1.00
375_V	406_M	4.276	1.00
304_T	336_N	4.230	1.00
365_A	413_I	3.818	1.00
306_A	414_T	3.753	1.00
376_A	400_K	2.939	1.00
276_A	284_P	2.928	1.00
249_S	352_I	2.908	1.00
401_V	405_V	2.893	1.00
308_V	339_I	2.867	1.00
91_I	153_M	2.860	1.00
362_T	414_T	2.792	1.00
361_L	417_I	2.747	1.00
315_S	426_D	2.726	1.00
84_A	152_A	2.479	1.00
272_A	285_S	2.421	1.00
362_T	410_N	2.415	1.00
365_A	406_M	2.399	1.00
427_H	431_R	2.345	1.00
412_L	416_A	2.324	1.00
207_I	218_V	2.299	1.00
358_A	361_L	2.260	1.00
99_Y	164_R	2.251	1.00
202_L	206_L	2.237	1.00
88_A	110_S	2.190	1.00
166_I	195_I	2.185	1.00
358_A	417_I	2.178	1.00
24_H	95_L	2.176	1.00
96_A	106_A	2.163	1.00
397_T	403_G	2.107	1.00
366_T	370_M	2.076	1.00
234_L	364_T	2.075	1.00
361_L	413_I	2.057	1.00
314_R	419_Y	2.020	1.00
23_R	99_Y	2.017	1.00
310_T	415_C	2.013	1.00
429_K	432_E	2.005	1.00
252_I	257_I	2.004	1.00
99_Y	161_E	1.989	1.00
409_V	413_I	1.988	1.00
376_A	402_S	1.948	1.00
431_R	435_A	1.938	1.00
277_F	283_L	1.918	1.00
394_Y	404_A	1.917	1.00
242_F	360_L	1.908	1.00
309_L	411_L	1.875	1.00
406_M	410_N	1.867	1.00
238_L	360_L	1.865	1.00
369_G	374_L	1.860	1.00
351_L	425_W	1.857	1.00
24_H	161_E	1.852	1.00
368_I	372_T	1.836	1.00
232_G	285_S	1.832	1.00
317_S	426_D	1.823	1.00
92_A	106_A	1.808	1.00
366_T	410_N	1.807	1.00
393_G	407_Q	1.790	1.00
430_W	434_S	1.790	1.00
315_S	422_F	1.763	1.00
345_I	351_L	1.735	1.00
369_G	406_M	1.733	1.00
304_T	331_A	1.702	1.00
310_T	422_F	1.697	1.00
9_E	14_P	1.695	1.00
393_G	403_G	1.675	1.00
161_E	164_R	1.668	1.00
275_L	279_A	1.665	1.00
276_A	283_L	1.664	1.00
374_L	402_S	1.659	1.00
390_L	404_A	1.658	1.00
369_G	375_V	1.654	1.00
306_A	415_C	1.652	1.00
102_D	185_K	1.642	1.00
234_L	238_L	1.624	1.00
358_A	414_T	1.623	1.00
264_P	268_G	1.611	1.00
60_M	68_W	1.602	1.00
23_R	98_S	1.601	1.00
246_L	250_C	1.595	1.00
164_R	168_Q	1.593	0.99
238_L	364_T	1.581	0.99
366_T	406_M	1.573	0.99
156_A	160_T	1.566	0.99
44_V	48_L	1.566	0.99
425_W	429_K	1.560	0.99
117_A	155_I	1.559	0.99
303_A	362_T	1.555	0.99
92_A	107_G	1.549	0.99
416_A	419_Y	1.546	0.99
255_A	301_S	1.545	0.99
402_S	405_V	1.532	0.99
248_W	254_G	1.527	0.99
242_F	246_L	1.525	0.99
7_V	11_K	1.517	0.99
392_S	407_Q	1.510	0.99
306_A	411_L	1.509	0.99
93_Y	104_L	1.503	0.99
320_M	425_W	1.497	0.99
165_Y	169_K	1.494	0.99
310_T	419_Y	1.477	0.99
374_L	406_M	1.475	0.99
89_F	111_I	1.450	0.99
92_A	110_S	1.449	0.99
176_P	179_V	1.444	0.99
113_A	200_V	1.433	0.99
319_Q	429_K	1.417	0.99
95_L	161_E	1.406	0.99
28_L	157_L	1.404	0.99
214_S	217_N	1.401	0.99
364_T	368_I	1.389	0.99
408_L	412_L	1.388	0.99
305_L	411_L	1.385	0.99
271_D	275_L	1.372	0.98
113_A	196_I	1.358	0.98
352_I	356_I	1.353	0.98
166_I	171_I	1.350	0.98
321_K	325_R	1.350	0.98
22_Q	161_E	1.346	0.98
390_L	408_L	1.346	0.98
295_W	370_M	1.346	0.98
31_G	90_G	1.332	0.98
158_F	199_L	1.331	0.98
24_H	157_L	1.325	0.98
88_A	152_A	1.318	0.98
389_P	411_L	1.299	0.98
95_L	99_Y	1.294	0.98
365_A	369_G	1.289	0.98
241_E	363_I	1.287	0.98
317_S	433_E	1.286	0.98
296_I	363_I	1.277	0.98
6_R	10_E	1.276	0.98
56_Y	60_M	1.275	0.98
431_R	434_S	1.275	0.98
88_A	156_A	1.270	0.97
350_L	424_I	1.270	0.97
289_T	293_Q	1.261	0.97
171_I	195_I	1.260	0.97
172_V	188_V	1.259	0.97
31_G	94_R	1.258	0.97
367_Y	371_S	1.254	0.97
221_D	225_T	1.249	0.97
340_I	355_F	1.249	0.97
288_T	379_A	1.246	0.97
311_M	343_M	1.238	0.97
87_A	149_L	1.236	0.97
320_M	429_K	1.233	0.97
276_A	281_E	1.231	0.97
76_V	81_D	1.227	0.97
38_L	86_I	1.225	0.97
310_T	324_G	1.224	0.97
317_S	430_W	1.224	0.97
68_W	72_L	1.223	0.97
210_T	213_Q	1.222	0.97
277_F	380_G	1.218	0.97
365_A	410_N	1.204	0.96
54_P	58_D	1.197	0.96
331_A	336_N	1.196	0.96
112_A	197_V	1.192	0.96
276_A	280_G	1.188	0.96
142_T	147_K	1.186	0.96
34_L	90_G	1.180	0.96
400_K	403_G	1.179	0.96
45_F	75_P	1.174	0.96
269_A	285_S	1.159	0.96
309_L	415_C	1.158	0.96
118_T	216_H	1.157	0.96
318_K	322_Q	1.153	0.96
35_T	90_G	1.145	0.95
299_G	305_L	1.141	0.95
42_G	79_S	1.140	0.95
283_L	380_G	1.140	0.95
276_A	282_A	1.139	0.95
50_S	73_G	1.138	0.95
88_A	92_A	1.133	0.95
276_A	279_A	1.131	0.95
175_M	179_V	1.129	0.95
162_I	196_I	1.125	0.95
88_A	107_G	1.123	0.95
7_V	14_P	1.118	0.95
274_R	278_Q	1.113	0.95
275_L	278_Q	1.112	0.95
387_M	395_L	1.107	0.94
323_L	327_G	1.107	0.94
75_P	201_W	1.106	0.94
322_Q	325_R	1.102	0.94
101_V	164_R	1.101	0.94
151_V	216_H	1.071	0.93
109_I	193_G	1.069	0.93
23_R	161_E	1.066	0.93
308_V	324_G	1.061	0.93
8_M	424_I	1.060	0.93
423_R	426_D	1.059	0.93
271_D	274_R	1.051	0.93
40_I	190_L	1.050	0.93
152_A	156_A	1.043	0.92
299_G	302_G	1.041	0.92
389_P	407_Q	1.037	0.92
158_F	200_V	1.036	0.92
85_M	115_L	1.033	0.92
235_G	239_I	1.032	0.92
310_T	313_V	1.031	0.92
390_L	407_Q	1.024	0.92
160_T	164_R	1.021	0.92
31_G	156_A	1.020	0.92
357_I	361_L	1.015	0.91
8_M	14_P	1.015	0.91
77_N	81_D	1.011	0.91
101_V	167_I	1.004	0.91
95_L	160_T	1.004	0.91
336_N	340_I	1.003	0.91
97_E	103_A	1.000	0.91
358_A	362_T	0.997	0.91
94_R	97_E	0.996	0.91
175_M	178_G	0.992	0.90
312_L	328_I	0.991	0.90
302_G	336_N	0.989	0.90
298_V	303_A	0.988	0.90
240_A	262_M	0.987	0.90
32_I	87_A	0.985	0.90
355_F	418_Y	0.984	0.90
324_G	422_F	0.979	0.90
310_T	314_R	0.975	0.90
410_N	414_T	0.974	0.90
300_G	304_T	0.973	0.90
158_F	162_I	0.967	0.89
428_Q	431_R	0.965	0.89
368_I	371_S	0.964	0.89
295_W	397_T	0.961	0.89
263_A	289_T	0.958	0.89
303_A	306_A	0.957	0.89
314_R	415_C	0.955	0.89
155_I	200_V	0.955	0.89
390_L	393_G	0.952	0.88
272_A	276_A	0.952	0.88
24_H	99_Y	0.949	0.88
260_G	264_P	0.948	0.88
93_Y	103_A	0.945	0.88
241_E	296_I	0.942	0.88
217_N	221_D	0.940	0.88
27_A	98_S	0.938	0.88
49_T	73_G	0.938	0.88
235_G	238_L	0.935	0.88
6_R	11_K	0.934	0.88
426_D	433_E	0.933	0.87
365_A	409_V	0.933	0.87
306_A	309_L	0.931	0.87
191_I	195_I	0.930	0.87
31_G	91_I	0.929	0.87
308_V	311_M	0.925	0.87
313_V	426_D	0.922	0.87
412_L	415_C	0.918	0.87
109_I	196_I	0.917	0.87
313_V	419_Y	0.917	0.87
314_R	422_F	0.913	0.86
135_V	138_G	0.912	0.86
106_A	163_Y	0.909	0.86
85_M	144_L	0.906	0.86
89_F	104_L	0.905	0.86
369_G	373_G	0.903	0.86
82_I	86_I	0.902	0.86
311_M	422_F	0.898	0.85
31_G	157_L	0.897	0.85
312_L	324_G	0.897	0.85
50_S	386_T	0.896	0.85
274_R	380_G	0.894	0.85
339_I	345_I	0.894	0.85
240_A	258_I	0.893	0.85
204_R	208_E	0.893	0.85
340_I	345_I	0.893	0.85
36_M	39_I	0.892	0.85
306_A	310_T	0.890	0.85
232_G	269_A	0.888	0.85
139_I	144_L	0.887	0.85
230_L	239_I	0.886	0.85
270_M	290_Q	0.882	0.84
8_M	79_S	0.878	0.84
49_T	72_L	0.874	0.84
405_V	409_V	0.873	0.84
206_L	209_M	0.871	0.84
59_F	63_V	0.871	0.84
375_V	402_S	0.866	0.83
307_L	418_Y	0.865	0.83
311_M	324_G	0.863	0.83
114_F	152_A	0.863	0.83
277_F	280_G	0.861	0.83
84_A	88_A	0.857	0.83
87_A	91_I	0.852	0.82
58_D	62_S	0.851	0.82
311_M	331_A	0.849	0.82
312_L	325_R	0.846	0.82
299_G	303_A	0.846	0.82
426_D	430_W	0.843	0.82
248_W	253_H	0.842	0.81
46_L	80_F	0.837	0.81
331_A	339_I	0.837	0.81
30_D	182_A	0.837	0.81
162_I	199_L	0.833	0.81
369_G	372_T	0.831	0.81
401_V	404_A	0.828	0.80
35_T	87_A	0.824	0.80
277_F	284_P	0.823	0.80
337_E	341_F	0.822	0.80
180_P	226_P	0.816	0.79
103_A	107_G	0.816	0.79
173_F	176_P	0.815	0.79
237_S	363_I	0.815	0.79
10_E	14_P	0.814	0.79
30_D	98_S	0.813	0.79
122_V	138_G	0.808	0.79
97_E	100_G	0.807	0.79
269_A	272_A	0.804	0.78
173_F	179_V	0.804	0.78
19_I	25_L	0.804	0.78
159_S	196_I	0.803	0.78
334_N	385_W	0.802	0.78
422_F	426_D	0.801	0.78
307_L	422_F	0.800	0.78
113_A	159_S	0.798	0.78
369_G	409_V	0.796	0.78
245_M	301_S	0.796	0.78
161_E	165_Y	0.795	0.78
162_I	195_I	0.791	0.77
154_L	219_V	0.790	0.77
53_I	56_Y	0.790	0.77
78_A	115_L	0.789	0.77
350_L	428_Q	0.786	0.77
253_H	337_E	0.785	0.77
383_V	396_A	0.784	0.77
419_Y	422_F	0.782	0.76
306_A	416_A	0.782	0.76
115_L	144_L	0.779	0.76
184_S	188_V	0.777	0.76
180_P	338_P	0.776	0.76
295_W	366_T	0.774	0.76
406_M	409_V	0.772	0.76
291_F	366_T	0.772	0.76
375_V	403_G	0.771	0.75
404_A	407_Q	0.771	0.75
424_I	428_Q	0.769	0.75
85_M	111_I	0.769	0.75
155_I	159_S	0.767	0.75
114_F	144_L	0.767	0.75
409_V	412_L	0.765	0.75
299_G	336_N	0.762	0.75
205_L	209_M	0.758	0.74
311_M	320_M	0.757	0.74
286_I	370_M	0.757	0.74
300_G	336_N	0.755	0.74
101_V	168_Q	0.754	0.74
411_L	415_C	0.753	0.74
175_M	187_F	0.751	0.74
298_V	305_L	0.751	0.74
51_L	56_Y	0.750	0.73
358_A	413_I	0.748	0.73
143_L	217_N	0.746	0.73
199_L	202_L	0.745	0.73
245_M	297_N	0.745	0.73
17_G	21_G	0.744	0.73
238_L	242_F	0.741	0.73
58_D	61_A	0.737	0.72
375_V	400_K	0.736	0.72
327_G	339_I	0.736	0.72
313_V	324_G	0.735	0.72
410_N	413_I	0.731	0.72
46_L	76_V	0.729	0.71
49_T	75_P	0.728	0.71
371_S	376_A	0.727	0.71
286_I	291_F	0.725	0.71
308_V	331_A	0.725	0.71
8_M	12_I	0.723	0.71
302_G	355_F	0.722	0.71
270_M	382_A	0.722	0.71
25_L	347_M	0.722	0.71
159_S	200_V	0.720	0.70
302_G	418_Y	0.720	0.70
394_Y	398_G	0.719	0.70
14_P	17_G	0.719	0.70
430_W	433_E	0.715	0.70
413_I	417_I	0.714	0.70
315_S	320_M	0.712	0.70
9_E	13_M	0.712	0.70
234_L	368_I	0.712	0.70
21_G	108_A	0.712	0.70
397_T	400_K	0.712	0.70
206_L	210_T	0.706	0.69
314_R	321_K	0.706	0.69
390_L	411_L	0.705	0.69
15_V	19_I	0.705	0.69
151_V	155_I	0.702	0.68
114_F	118_T	0.701	0.68
74_Y	204_R	0.696	0.68
262_M	266_W	0.696	0.68
22_Q	99_Y	0.694	0.68
86_I	112_A	0.690	0.67
69_A	73_G	0.689	0.67
305_L	331_A	0.689	0.67
23_R	27_A	0.688	0.67
267_Y	271_D	0.688	0.67
171_I	191_I	0.687	0.67
167_I	172_V	0.684	0.66
357_I	417_I	0.684	0.66
186_S	190_L	0.682	0.66
432_E	435_A	0.679	0.66
295_W	375_V	0.679	0.66
25_L	29_R	0.677	0.66
111_I	144_L	0.677	0.66
362_T	366_T	0.677	0.66
30_D	94_R	0.674	0.65
393_G	404_A	0.673	0.65
96_A	160_T	0.667	0.64
305_L	332_L	0.665	0.64
226_P	338_P	0.665	0.64
320_M	351_L	0.664	0.64
106_A	160_T	0.664	0.64
56_Y	59_F	0.663	0.64
359_P	418_Y	0.663	0.64
269_A	288_T	0.662	0.64
11_K	14_P	0.660	0.64
170_N	174_K	0.658	0.63
188_V	191_I	0.656	0.63
32_I	47_I	0.656	0.63
6_R	9_E	0.654	0.63
340_I	346_V	0.654	0.63
91_I	157_L	0.653	0.63
180_P	187_F	0.649	0.62
92_A	96_A	0.648	0.62
320_M	324_G	0.648	0.62
248_W	347_M	0.647	0.62
193_G	197_V	0.646	0.62
27_A	31_G	0.645	0.62
309_L	353_V	0.645	0.62
308_V	422_F	0.644	0.62
82_I	85_M	0.643	0.62
287_F	367_Y	0.642	0.62
46_L	49_T	0.642	0.62
5_T	352_I	0.642	0.62
328_I	332_L	0.642	0.62
27_A	95_L	0.641	0.61
19_I	364_T	0.639	0.61
317_S	320_M	0.639	0.61
374_L	409_V	0.636	0.61
31_G	87_A	0.636	0.61
281_E	284_P	0.635	0.61
415_C	419_Y	0.635	0.61
311_M	339_I	0.634	0.61
357_I	360_L	0.633	0.60
223_L	247_L	0.630	0.60
245_M	355_F	0.630	0.60
230_L	331_A	0.629	0.60
324_G	327_G	0.628	0.60
237_S	292_F	0.628	0.60
300_G	418_Y	0.627	0.60
50_S	53_I	0.626	0.60
244_Q	297_N	0.625	0.59
319_Q	426_D	0.624	0.59
10_E	242_F	0.623	0.59
180_P	183_V	0.622	0.59
286_I	367_Y	0.621	0.59
236_G	250_C	0.621	0.59
177_D	181_P	0.621	0.59
253_H	256_S	0.620	0.59
25_L	266_W	0.620	0.59
33_I	364_T	0.618	0.59
323_L	339_I	0.618	0.59
22_Q	95_L	0.616	0.58
156_A	159_S	0.615	0.58
194_F	198_L	0.615	0.58
185_K	188_V	0.613	0.58
303_A	414_T	0.613	0.58
106_A	159_S	0.613	0.58
167_I	170_N	0.612	0.58
290_Q	379_A	0.611	0.58
238_L	363_I	0.610	0.58
360_L	364_T	0.610	0.58
376_A	403_G	0.610	0.58
178_G	329_G	0.610	0.58
8_M	11_K	0.609	0.58
236_G	249_S	0.608	0.57
301_S	355_F	0.605	0.57
228_S	268_G	0.605	0.57
376_A	404_A	0.604	0.57
176_P	180_P	0.598	0.56
354_P	421_F	0.598	0.56
89_F	92_A	0.597	0.56
210_T	218_V	0.597	0.56
424_I	427_H	0.597	0.56
225_T	229_I	0.595	0.56
253_H	341_F	0.594	0.56
317_S	324_G	0.592	0.55
26_S	29_R	0.591	0.55
71_K	201_W	0.591	0.55
419_Y	423_R	0.587	0.55
114_F	145_G	0.587	0.55
40_I	384_P	0.586	0.55
423_R	430_W	0.586	0.55
183_V	384_P	0.585	0.55
222_L	405_V	0.585	0.55
308_V	328_I	0.585	0.55
413_I	416_A	0.582	0.54
404_A	408_L	0.581	0.54
361_L	365_A	0.580	0.54
313_V	415_C	0.576	0.53
241_E	292_F	0.573	0.53
345_I	355_F	0.568	0.52
248_W	337_E	0.568	0.52
56_Y	63_V	0.567	0.52
114_F	162_I	0.567	0.52
166_I	170_N	0.567	0.52
180_P	264_P	0.566	0.52
270_M	288_T	0.565	0.52
76_V	80_F	0.564	0.52
29_R	102_D	0.564	0.52
90_G	94_R	0.562	0.52
423_R	427_H	0.561	0.51
16_A	22_Q	0.561	0.51
316_R	423_R	0.560	0.51
290_Q	293_Q	0.560	0.51
387_M	393_G	0.557	0.51
230_L	236_G	0.557	0.51
351_L	418_Y	0.557	0.51
60_M	403_G	0.557	0.51
308_V	312_L	0.555	0.51
73_G	76_V	0.554	0.51
314_R	325_R	0.554	0.51
249_S	349_P	0.553	0.50
237_S	287_F	0.552	0.50
309_L	332_L	0.552	0.50
116_L	197_V	0.551	0.50
239_I	311_M	0.550	0.50
380_G	398_G	0.549	0.50
336_N	355_F	0.548	0.50
254_G	359_P	0.547	0.50
101_V	160_T	0.547	0.50
219_V	225_T	0.546	0.50
29_R	33_I	0.546	0.50
379_A	397_T	0.546	0.50
254_G	355_F	0.546	0.50
190_L	384_P	0.545	0.49
162_I	200_V	0.545	0.49
22_Q	27_A	0.545	0.49
82_I	115_L	0.544	0.49
174_K	177_D	0.544	0.49
327_G	331_A	0.544	0.49
329_G	352_I	0.543	0.49
117_A	200_V	0.542	0.49
84_A	145_G	0.541	0.49
313_V	325_R	0.540	0.49
304_T	327_G	0.539	0.49
92_A	160_T	0.539	0.49
311_M	323_L	0.539	0.49
183_V	186_S	0.538	0.49
48_L	199_L	0.537	0.48
315_S	319_Q	0.536	0.48
20_A	25_L	0.535	0.48
134_M	137_G	0.535	0.48
100_G	281_E	0.533	0.48
172_V	185_K	0.532	0.48
178_G	318_K	0.530	0.48
57_A	61_A	0.529	0.47
370_M	375_V	0.529	0.47
53_I	58_D	0.527	0.47
215_L	218_V	0.527	0.47
334_N	386_T	0.527	0.47
295_W	403_G	0.527	0.47
228_S	236_G	0.527	0.47
306_A	418_Y	0.526	0.47
25_L	314_R	0.525	0.47
7_V	10_E	0.525	0.47
63_V	68_W	0.525	0.47
163_Y	189_A	0.525	0.47
295_W	396_A	0.524	0.47
10_E	357_I	0.524	0.47
299_G	307_L	0.521	0.46
11_K	316_R	0.520	0.46
256_S	263_A	0.520	0.46
425_W	428_Q	0.519	0.46
72_L	201_W	0.519	0.46
302_G	307_L	0.518	0.46
248_W	301_S	0.518	0.46
54_P	57_A	0.518	0.46
8_M	332_L	0.517	0.46
268_G	271_D	0.517	0.46
218_V	223_L	0.517	0.46
201_W	205_L	0.516	0.46
83_M	267_Y	0.516	0.46
162_I	166_I	0.516	0.46
157_L	161_E	0.515	0.46
57_A	60_M	0.515	0.46
229_I	239_I	0.515	0.46
320_M	422_F	0.515	0.46
92_A	378_P	0.515	0.46
291_F	370_M	0.513	0.45
279_A	282_A	0.513	0.45
201_W	204_R	0.513	0.45
302_G	359_P	0.513	0.45
359_P	411_L	0.513	0.45
234_L	286_I	0.513	0.45
398_G	404_A	0.513	0.45
389_P	404_A	0.512	0.45
143_L	216_H	0.511	0.45
48_L	165_Y	0.511	0.45
21_G	26_S	0.510	0.45
248_W	341_F	0.510	0.45
95_L	164_R	0.510	0.45
355_F	359_P	0.509	0.45
175_M	180_P	0.508	0.45
42_G	189_A	0.507	0.45
23_R	40_I	0.507	0.45
385_W	389_P	0.506	0.45
332_L	434_S	0.506	0.45
158_F	353_V	0.505	0.44
299_G	304_T	0.505	0.44
97_E	102_D	0.504	0.44
18_K	21_G	0.504	0.44
370_M	403_G	0.504	0.44
146_S	150_F	0.503	0.44
43_S	80_F	0.503	0.44
290_Q	294_I	0.502	0.44
70_D	85_M	0.501	0.44
34_L	94_R	0.501	0.44
78_A	116_L	0.500	0.44

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qnqA	2	0.9797	100	0.293	Contact Map
3ne5A	3	0.3536	20.8	0.975	Contact Map
2kncB	1	0.1306	14.4	0.977	Contact Map
3mktA	1	0.3716	13.2	0.977	Contact Map
4lz6A	1	0.3446	13.2	0.977	Contact Map
2kncA	1	0.1171	12.5	0.977	Contact Map
2rddB	1	0.0833	10.2	0.978	Contact Map
4mt1A	3	0.3423	9.6	0.979	Contact Map
3w4tA	1	0.3378	8	0.979	Contact Map
2kluA	1	0.1216	7.3	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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