DLTB - BACSU - GREMLIN Contacts

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DLTB - Protein DltB

UniProt:	P39580	Sequences: MTPYSSFLFFILLGILLLPTIILGLNGKRFQAYNMFISIIILALIFSHDLHGVIALCLFTIWQVLLISGYLAYRQKANSGFVFCGAVIASILPLFLSKIWPFLSHPQPHHPPHNLISFLGISYLTFKGVQLIMEARDGLLKEQLPLHRLLYFILFFPTISSGPIDRYRRFVKDEQKAWTKEEYADLLYTGIHKIFIGFLYKFIIGYAINTYFIMNLPAITHNKILGNLLYMYGYSMYLFFDFAGYTMFAVGVSYIMGIKSPENFNKPFISKNIKDFWNRWHMSLSFWFRDYVFMRFVFWMTKKKWIKNRMAVSNIGYFLLFMLMGVWHGLAPQYIIYGLYHAVLMTCYNFFEKWNKKYKWLPSNRWTTILAIVITFHFVCFGFYIFSGKPFHHHH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	395 (367)
Sequences:	3596 (2849)
Seq/√Len:	148.7

BACSU - DLTB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
307_K	315_I	4.477	1.00
200_Y	247_M	3.746	1.00
270_S	275_D	3.739	1.00
235_S	380_C	3.706	1.00
340_Y	382_G	3.450	1.00
200_Y	243_A	3.377	1.00
193_K	262_E	3.260	1.00
344_L	378_F	3.123	1.00
71_L	142_E	3.082	1.00
155_F	253_S	3.023	1.00
129_V	133_M	2.899	1.00
19_P	40_I	2.893	1.00
22_I	36_F	2.724	1.00
322_M	339_L	2.652	1.00
243_A	247_M	2.617	1.00
199_L	203_I	2.600	1.00
60_T	150_L	2.560	1.00
127_K	158_T	2.555	1.00
42_L	60_T	2.552	1.00
38_S	150_L	2.512	1.00
86_A	132_I	2.508	1.00
106_P	332_P	2.501	1.00
166_R	290_D	2.476	1.00
66_L	86_A	2.325	1.00
231_M	380_C	2.298	1.00
194_I	248_F	2.267	1.00
26_N	36_F	2.263	1.00
336_I	385_I	2.233	1.00
271_K	275_D	2.189	1.00
261_P	283_S	2.181	1.00
268_F	383_F	2.164	1.00
189_T	254_Y	2.094	1.00
288_F	324_M	2.055	1.00
254_Y	259_K	2.030	1.00
193_K	250_V	2.028	1.00
59_F	90_S	2.021	1.00
63_Q	90_S	2.014	1.00
62_W	89_A	2.012	1.00
19_P	256_M	2.005	1.00
292_V	323_L	1.999	1.00
315_I	319_L	1.973	1.00
169_R	286_F	1.896	1.00
9_F	252_V	1.861	1.00
232_Y	377_H	1.833	1.00
340_Y	344_L	1.790	1.00
372_I	376_F	1.774	1.00
282_M	286_F	1.770	1.00
79_S	138_G	1.765	1.00
326_V	335_I	1.755	1.00
130_Q	152_F	1.747	1.00
186_L	259_K	1.731	1.00
61_I	146_L	1.714	1.00
148_R	175_Q	1.711	1.00
318_F	339_L	1.706	1.00
288_F	320_L	1.701	1.00
271_K	368_T	1.698	1.00
101_P	112_P	1.691	1.00
271_K	371_A	1.683	1.00
69_G	82_V	1.660	1.00
37_I	151_Y	1.646	1.00
84_C	88_I	1.646	1.00
133_M	137_D	1.645	1.00
213_I	387_S	1.641	1.00
145_P	148_R	1.637	1.00
274_K	349_N	1.624	1.00
186_L	254_Y	1.623	1.00
34_N	148_R	1.617	1.00
341_H	379_V	1.610	1.00
272_N	348_Y	1.607	1.00
297_V	300_M	1.605	1.00
262_E	265_N	1.592	1.00
128_G	153_I	1.588	1.00
297_V	316_G	1.579	1.00
215_N	230_Y	1.528	1.00
190_G	251_G	1.522	1.00
336_I	391_F	1.513	1.00
303_K	313_S	1.501	1.00
304_K	313_S	1.500	1.00
274_K	348_Y	1.492	1.00
173_D	259_K	1.472	1.00
66_L	82_V	1.470	1.00
313_S	349_N	1.463	1.00
294_M	301_T	1.463	1.00
24_G	255_I	1.446	1.00
201_K	241_D	1.443	1.00
67_I	135_A	1.439	1.00
102_F	106_P	1.424	1.00
194_I	255_I	1.422	1.00
375_T	379_V	1.408	1.00
223_K	226_G	1.408	1.00
74_R	79_S	1.406	1.00
63_Q	128_G	1.404	1.00
62_W	66_L	1.403	1.00
333_Q	388_G	1.387	1.00
70_Y	82_V	1.375	1.00
379_V	383_F	1.369	1.00
67_I	70_Y	1.366	1.00
63_Q	86_A	1.360	1.00
321_F	345_M	1.356	1.00
146_L	150_L	1.354	1.00
65_L	69_G	1.340	1.00
4_Y	9_F	1.334	1.00
318_F	342_A	1.317	1.00
167_Y	171_V	1.311	1.00
294_M	297_V	1.306	1.00
379_V	382_G	1.301	1.00
273_I	344_L	1.298	1.00
83_F	87_V	1.294	1.00
216_L	387_S	1.289	1.00
64_V	68_S	1.286	1.00
285_S	317_Y	1.282	1.00
101_P	114_N	1.280	1.00
87_V	92_L	1.271	1.00
276_F	383_F	1.270	1.00
231_M	384_Y	1.263	1.00
303_K	315_I	1.254	1.00
246_T	250_V	1.247	1.00
101_P	113_H	1.236	1.00
42_L	154_L	1.235	1.00
170_F	174_E	1.225	1.00
276_F	379_V	1.221	1.00
322_M	335_I	1.218	1.00
273_I	375_T	1.218	1.00
341_H	382_G	1.212	1.00
285_S	289_R	1.205	1.00
297_V	301_T	1.204	1.00
212_F	387_S	1.202	1.00
143_Q	175_Q	1.201	1.00
265_N	282_M	1.195	1.00
139_L	168_R	1.183	1.00
50_L	54_I	1.183	1.00
373_V	377_H	1.179	1.00
187_L	255_I	1.171	1.00
238_L	268_F	1.169	1.00
96_L	115_L	1.164	1.00
314_N	350_F	1.162	1.00
43_A	47_S	1.161	1.00
158_T	165_D	1.145	1.00
68_S	72_A	1.143	1.00
306_I	315_I	1.143	1.00
54_I	58_L	1.140	1.00
80_G	136_R	1.135	1.00
134_E	291_Y	1.135	1.00
321_F	342_A	1.131	0.99
250_V	262_E	1.128	0.99
185_D	189_T	1.127	0.99
321_F	324_M	1.126	0.99
46_F	50_L	1.123	0.99
119_L	160_S	1.122	0.99
238_L	383_F	1.117	0.99
340_Y	385_I	1.108	0.99
303_K	307_K	1.107	0.99
143_Q	148_R	1.102	0.99
266_K	269_I	1.096	0.99
16_L	256_M	1.095	0.99
87_V	133_M	1.095	0.99
42_L	57_C	1.089	0.99
293_F	297_V	1.085	0.99
235_S	376_F	1.085	0.99
20_T	255_I	1.078	0.99
274_K	278_N	1.078	0.99
91_I	129_V	1.074	0.99
381_F	385_I	1.073	0.99
95_F	103_L	1.061	0.99
212_F	230_Y	1.061	0.99
212_F	216_L	1.061	0.99
321_F	341_H	1.057	0.99
271_K	372_I	1.056	0.99
127_K	165_D	1.056	0.99
36_F	40_I	1.055	0.99
305_W	314_N	1.049	0.99
204_I	208_I	1.047	0.99
216_L	231_M	1.044	0.99
101_P	105_H	1.044	0.99
340_Y	378_F	1.043	0.99
296_F	319_L	1.042	0.99
70_Y	79_S	1.039	0.99
46_F	53_V	1.038	0.99
71_L	141_K	1.032	0.99
128_G	149_L	1.031	0.99
27_G	33_Y	1.029	0.99
101_P	104_S	1.028	0.99
103_L	326_V	1.028	0.99
198_F	248_F	1.021	0.99
95_F	100_W	1.020	0.99
208_I	233_G	1.020	0.99
91_I	292_V	1.019	0.99
222_N	227_N	1.015	0.99
351_F	355_N	1.012	0.99
190_G	255_I	1.010	0.99
336_I	339_L	1.008	0.99
58_L	89_A	1.001	0.99
270_S	285_S	1.001	0.99
376_F	380_C	1.000	0.99
320_L	324_M	1.000	0.99
96_L	113_H	0.997	0.99
96_L	100_W	0.997	0.99
377_H	381_F	0.992	0.99
232_Y	380_C	0.991	0.99
317_Y	345_M	0.988	0.99
165_D	261_P	0.985	0.99
91_I	323_L	0.983	0.99
283_S	286_F	0.983	0.99
210_T	214_M	0.983	0.99
293_F	300_M	0.981	0.99
218_A	221_H	0.980	0.99
169_R	261_P	0.974	0.98
382_G	385_I	0.972	0.98
138_G	141_K	0.970	0.98
59_F	128_G	0.968	0.98
49_D	53_V	0.963	0.98
368_T	372_I	0.958	0.98
76_K	79_S	0.951	0.98
273_I	341_H	0.949	0.98
88_I	92_L	0.949	0.98
39_I	43_A	0.948	0.98
216_L	230_Y	0.946	0.98
294_M	316_G	0.945	0.98
300_M	316_G	0.944	0.98
147_H	151_Y	0.939	0.98
131_L	144_L	0.938	0.98
121_I	125_T	0.937	0.98
364_N	367_T	0.935	0.98
216_L	388_G	0.933	0.98
332_P	335_I	0.932	0.98
228_L	377_H	0.927	0.98
69_G	72_A	0.926	0.98
20_T	24_G	0.926	0.98
27_G	31_Q	0.923	0.98
100_W	115_L	0.917	0.98
367_T	371_A	0.913	0.98
188_Y	192_H	0.912	0.98
237_Y	387_S	0.906	0.98
60_T	63_Q	0.905	0.98
99_I	330_L	0.900	0.97
314_N	349_N	0.900	0.97
182_E	187_L	0.899	0.97
296_F	316_G	0.896	0.97
318_F	346_T	0.888	0.97
344_L	382_G	0.885	0.97
100_W	104_S	0.883	0.97
225_L	229_L	0.880	0.97
68_S	144_L	0.877	0.97
22_I	26_N	0.874	0.97
81_F	84_C	0.872	0.97
294_M	300_M	0.869	0.97
151_Y	174_E	0.868	0.97
67_I	131_L	0.867	0.97
376_F	379_V	0.863	0.97
59_F	63_Q	0.861	0.97
183_Y	186_L	0.850	0.96
59_F	125_T	0.850	0.96
127_K	253_S	0.849	0.96
84_C	87_V	0.846	0.96
324_M	345_M	0.840	0.96
63_Q	66_L	0.840	0.96
224_I	228_L	0.839	0.96
324_M	337_Y	0.837	0.96
48_H	55_A	0.829	0.96
273_I	379_V	0.821	0.96
20_T	187_L	0.821	0.96
337_Y	383_F	0.821	0.96
104_S	110_H	0.820	0.96
59_F	93_P	0.819	0.96
342_A	346_T	0.819	0.96
270_S	279_R	0.816	0.95
140_L	167_Y	0.815	0.95
236_M	376_F	0.805	0.95
158_T	260_S	0.805	0.95
212_F	233_G	0.804	0.95
378_F	382_G	0.803	0.95
34_N	258_I	0.802	0.95
83_F	133_M	0.799	0.95
187_L	191_I	0.793	0.95
35_M	147_H	0.792	0.95
194_I	252_V	0.791	0.95
208_I	236_M	0.790	0.95
158_T	161_S	0.786	0.94
209_N	213_I	0.785	0.94
211_Y	233_G	0.784	0.94
82_V	85_G	0.783	0.94
165_D	170_F	0.782	0.94
222_N	230_Y	0.778	0.94
215_N	222_N	0.778	0.94
140_L	168_R	0.778	0.94
208_I	212_F	0.777	0.94
22_I	40_I	0.776	0.94
87_V	129_V	0.775	0.94
28_K	31_Q	0.775	0.94
275_D	278_N	0.772	0.94
275_D	279_R	0.769	0.94
35_M	39_I	0.769	0.94
285_S	320_L	0.768	0.94
19_P	36_F	0.764	0.94
102_F	332_P	0.764	0.94
106_P	335_I	0.764	0.94
277_W	328_H	0.762	0.93
286_F	289_R	0.760	0.93
43_A	46_F	0.760	0.93
305_W	350_F	0.759	0.93
149_L	153_I	0.759	0.93
63_Q	132_I	0.758	0.93
300_M	337_Y	0.758	0.93
42_L	150_L	0.753	0.93
71_L	144_L	0.751	0.93
381_F	384_Y	0.743	0.93
165_D	169_R	0.741	0.93
23_L	33_Y	0.738	0.92
74_R	138_G	0.737	0.92
227_N	384_Y	0.733	0.92
219_I	222_N	0.731	0.92
83_F	136_R	0.730	0.92
195_F	199_L	0.729	0.92
331_A	391_F	0.727	0.92
213_I	217_P	0.727	0.92
236_M	240_F	0.727	0.92
326_V	331_A	0.723	0.92
217_P	389_K	0.719	0.91
15_I	23_L	0.719	0.91
57_C	61_I	0.715	0.91
235_S	383_F	0.714	0.91
34_N	147_H	0.713	0.91
293_F	316_G	0.712	0.91
209_N	237_Y	0.712	0.91
344_L	348_Y	0.712	0.91
305_W	353_K	0.711	0.91
33_Y	178_W	0.711	0.91
314_N	346_T	0.709	0.91
273_I	348_Y	0.708	0.91
253_S	258_I	0.704	0.91
201_K	205_G	0.704	0.91
193_K	247_M	0.701	0.90
301_T	313_S	0.701	0.90
340_Y	381_F	0.701	0.90
108_P	112_P	0.701	0.90
317_Y	342_A	0.700	0.90
60_T	149_L	0.699	0.90
8_L	47_S	0.698	0.90
102_F	330_L	0.698	0.90
320_L	345_M	0.697	0.90
348_Y	352_E	0.695	0.90
199_L	204_I	0.695	0.90
63_Q	149_L	0.695	0.90
102_F	335_I	0.693	0.90
368_T	371_A	0.693	0.90
318_F	343_V	0.692	0.90
10_F	194_I	0.692	0.90
83_F	132_I	0.690	0.90
292_V	326_V	0.689	0.90
285_S	290_D	0.686	0.89
301_T	316_G	0.683	0.89
294_M	337_Y	0.681	0.89
86_A	129_V	0.674	0.89
153_I	158_T	0.674	0.89
297_V	337_Y	0.673	0.88
165_D	260_S	0.673	0.88
341_H	383_F	0.672	0.88
365_R	368_T	0.672	0.88
111_P	114_N	0.671	0.88
52_G	55_A	0.670	0.88
41_I	45_I	0.669	0.88
246_T	249_A	0.668	0.88
28_K	33_Y	0.668	0.88
204_I	240_F	0.667	0.88
232_Y	235_S	0.666	0.88
366_W	369_I	0.665	0.88
24_G	187_L	0.663	0.88
100_W	113_H	0.661	0.88
189_T	192_H	0.661	0.88
278_N	285_S	0.659	0.87
161_S	234_Y	0.651	0.87
70_Y	83_F	0.651	0.87
345_M	348_Y	0.651	0.87
235_S	239_F	0.648	0.87
384_Y	388_G	0.647	0.86
74_R	78_N	0.646	0.86
75_Q	78_N	0.644	0.86
194_I	251_G	0.644	0.86
128_G	132_I	0.644	0.86
268_F	379_V	0.637	0.86
374_I	378_F	0.637	0.86
301_T	304_K	0.636	0.85
285_S	321_F	0.635	0.85
66_L	70_Y	0.632	0.85
318_F	322_M	0.632	0.85
228_L	384_Y	0.631	0.85
285_S	345_M	0.629	0.85
207_A	210_T	0.628	0.85
352_E	356_K	0.626	0.85
303_K	306_I	0.626	0.85
42_L	46_F	0.625	0.84
87_V	91_I	0.624	0.84
17_L	21_I	0.623	0.84
67_I	132_I	0.623	0.84
166_R	286_F	0.621	0.84
353_K	356_K	0.618	0.84
78_N	81_F	0.618	0.84
76_K	80_G	0.616	0.84
370_L	374_I	0.615	0.84
155_F	260_S	0.614	0.83
317_Y	349_N	0.613	0.83
247_M	262_E	0.613	0.83
285_S	341_H	0.612	0.83
143_Q	171_V	0.611	0.83
351_F	371_A	0.610	0.83
18_L	21_I	0.609	0.83
234_Y	238_L	0.609	0.83
190_G	254_Y	0.609	0.83
15_I	19_P	0.607	0.83
138_G	142_E	0.607	0.83
161_S	245_Y	0.606	0.83
59_F	124_L	0.605	0.83
193_K	254_Y	0.604	0.82
60_T	146_L	0.602	0.82
250_V	259_K	0.601	0.82
338_G	342_A	0.601	0.82
293_F	301_T	0.600	0.82
26_N	32_A	0.599	0.82
155_F	258_I	0.599	0.82
274_K	321_F	0.599	0.82
137_D	295_R	0.596	0.82
67_I	86_A	0.595	0.82
107_Q	110_H	0.594	0.81
49_D	52_G	0.593	0.81
37_I	256_M	0.592	0.81
77_A	80_G	0.592	0.81
369_I	373_V	0.591	0.81
313_S	317_Y	0.590	0.81
304_K	307_K	0.589	0.81
296_F	300_M	0.588	0.81
321_F	349_N	0.588	0.81
234_Y	268_F	0.587	0.81
34_N	178_W	0.585	0.80
347_C	351_F	0.584	0.80
77_A	81_F	0.583	0.80
235_S	268_F	0.582	0.80
135_A	142_E	0.582	0.80
83_F	137_D	0.581	0.80
80_G	84_C	0.581	0.80
130_Q	287_W	0.581	0.80
172_K	176_K	0.579	0.80
268_F	276_F	0.579	0.80
127_K	260_S	0.577	0.80
316_G	337_Y	0.577	0.80
246_T	260_S	0.576	0.79
264_F	267_P	0.576	0.79
228_L	232_Y	0.574	0.79
81_F	85_G	0.573	0.79
38_S	41_I	0.571	0.79
295_R	301_T	0.571	0.79
231_M	385_I	0.570	0.79
345_M	349_N	0.569	0.79
197_G	251_G	0.569	0.79
285_S	324_M	0.567	0.78
63_Q	124_L	0.567	0.78
54_I	57_C	0.565	0.78
63_Q	153_I	0.564	0.78
184_A	188_Y	0.563	0.78
297_V	304_K	0.563	0.78
187_L	190_G	0.562	0.78
369_I	372_I	0.562	0.78
265_N	275_D	0.560	0.77
331_A	335_I	0.559	0.77
229_L	233_G	0.559	0.77
15_I	40_I	0.557	0.77
133_M	287_W	0.557	0.77
133_M	139_L	0.556	0.77
19_P	37_I	0.555	0.77
278_N	289_R	0.554	0.77
182_E	186_L	0.554	0.77
209_N	212_F	0.553	0.77
143_Q	167_Y	0.553	0.77
130_Q	166_R	0.552	0.76
215_N	226_G	0.552	0.76
304_K	315_I	0.551	0.76
49_D	56_L	0.550	0.76
18_L	22_I	0.549	0.76
349_N	383_F	0.549	0.76
297_V	302_K	0.547	0.76
66_L	85_G	0.545	0.76
241_D	245_Y	0.545	0.76
38_S	147_H	0.544	0.75
40_I	43_A	0.543	0.75
69_G	81_F	0.543	0.75
61_I	65_L	0.542	0.75
348_Y	351_F	0.540	0.75
16_L	255_I	0.538	0.75
232_Y	236_M	0.537	0.75
127_K	130_Q	0.537	0.75
7_F	14_G	0.537	0.75
97_S	124_L	0.536	0.74
67_I	71_L	0.536	0.74
5_S	9_F	0.536	0.74
122_S	126_F	0.535	0.74
155_F	170_F	0.535	0.74
101_P	115_L	0.534	0.74
21_I	25_L	0.534	0.74
333_Q	391_F	0.533	0.74
147_H	150_L	0.533	0.74
75_Q	220_T	0.533	0.74
273_I	345_M	0.533	0.74
89_A	93_P	0.532	0.74
164_I	320_L	0.532	0.74
131_L	135_A	0.532	0.74
81_F	92_L	0.531	0.74
284_L	288_F	0.529	0.73
20_T	252_V	0.528	0.73
41_I	44_L	0.527	0.73
154_L	158_T	0.527	0.73
292_V	324_M	0.526	0.73
98_K	126_F	0.526	0.73
239_F	243_A	0.525	0.73
272_N	275_D	0.524	0.73
131_L	149_L	0.524	0.73
119_L	129_V	0.523	0.73
348_Y	371_A	0.523	0.73
231_M	235_S	0.522	0.72
351_F	356_K	0.522	0.72
317_Y	320_L	0.522	0.72
323_L	345_M	0.522	0.72
350_F	353_K	0.521	0.72
189_T	193_K	0.521	0.72
148_R	171_V	0.519	0.72
231_M	388_G	0.518	0.72
10_F	17_L	0.517	0.72
56_L	154_L	0.517	0.72
306_I	313_S	0.517	0.72
213_I	216_L	0.516	0.72
58_L	72_A	0.515	0.71
334_Y	383_F	0.515	0.71
90_S	93_P	0.514	0.71
189_T	259_K	0.514	0.71
135_A	144_L	0.513	0.71
48_H	324_M	0.511	0.71
297_V	383_F	0.511	0.71
166_R	289_R	0.510	0.71
186_L	257_G	0.509	0.71
232_Y	376_F	0.509	0.71
313_S	350_F	0.509	0.71
389_K	392_H	0.505	0.70
194_I	198_F	0.504	0.70
134_E	167_Y	0.504	0.70
64_V	149_L	0.503	0.70
96_L	103_L	0.503	0.70
167_Y	172_K	0.502	0.70
117_S	161_S	0.502	0.70
68_S	71_L	0.501	0.69
152_F	158_T	0.501	0.69
203_I	207_A	0.501	0.69
62_W	85_G	0.500	0.69

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4o6yA	2	0.2127	3.8	0.978	Contact Map
2i2jA	1	0.0532	3.4	0.978	Contact Map
4a2nB	1	0.1722	1.9	0.981	Contact Map
2rddB	1	0.0937	1.5	0.982	Contact Map
3si5X	1	0.0304	1.4	0.983	Contact Map
2f3yB	1	0.0456	1.2	0.983	Contact Map
1g92A	1	0.0633	1.1	0.983	Contact Map
4ue9B	1	0.0861	0.9	0.984	Contact Map
2ooaA	1	0.0911	0.9	0.984	Contact Map
3dvkB	1	0.0582	0.9	0.985	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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