GERBB - BACSU - GREMLIN Contacts

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GERBB - Spore germination protein B2

UniProt:	P39570	Sequences: MRKSEHKLTFMQTLIMISSTLIGAGVLTLPRSAAETGSPSGWLMILLQGVIFIIIVLLFLPFLQKNSGKTLFKLNSIVAGKFIGFLLNLYICLYFIGIVCFQARILGEVVGFFLLKNTPMAVVVFIFLAVAIYHVGGGVYSIAKVYAYIFPITLIIFMMLLMFSFRLFQLDFIRPVFEGGYQSFFSLFPKTLLYFSGFEIIFYLVPFMRDPKQVKKAVALGIATSTLFYSITLLIVIGCMTVAEAKTVTWPTISLIHALEVPGIFIERFDLFLQLTWTAQQFACMLGSFKGAHIGLTEIFHLKNKNNAWLLTAMLAATFFITMYPKDLNDVFYYGTLLGYAFLIVITIPFFVWFLSWIQKKIGRGQLQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	368 (354)
Sequences:	23799 (15069)
Seq/√Len:	800.9

ECOLI - POTE AROP LYSP YIFK ANSP YJEH PROY GABP CYCA MMUP YBAT PUUP PHEP ARCD ADIC PLAP FRLA YCAM GADC YGJI CADB YJEM TNAB MTR TYRP
BACSU - GERBB GERAB YBEC YNDE YDGF ROCC YBGF YHDG ASPP YTNA GABP STET AAPA ARCD YBXG HUTM YCGH YVBW ROCE YFNA YECA GERKB YDAO YFKT
HALSA - Q9HQB3 Q9HHU7 Q9HSL5
SULSO - Q97U05 Q97WS3 Q97X49 Q97Z63 Q97ZB5 Q7LXI7 Q97XM0 Q97WD4 Q97U33 Q97VR4 Q97VA8 Q97VA6 Q97Y76 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
299_I	311_L	4.212	1.00
49_G	226_T	3.551	1.00
132_I	317_A	3.322	1.00
355_L	359_Q	3.031	1.00
213_Q	216_K	2.967	1.00
210_D	213_Q	2.851	1.00
299_I	302_L	2.846	1.00
9_T	209_R	2.812	1.00
14_L	220_L	2.682	1.00
10_F	220_L	2.584	1.00
164_S	235_I	2.484	1.00
254_S	257_H	2.479	1.00
304_N	310_L	2.457	1.00
133_Y	137_G	2.430	1.00
13_T	208_M	2.430	1.00
309_W	312_T	2.382	1.00
302_L	311_L	2.339	1.00
169_Q	172_F	2.309	1.00
216_K	220_L	2.236	1.00
76_S	81_K	2.215	1.00
10_F	14_L	2.175	1.00
151_P	155_I	2.138	1.00
254_S	258_A	2.128	1.00
76_S	84_G	2.110	1.00
9_T	12_Q	2.092	1.00
244_E	258_A	2.089	1.00
125_F	324_Y	2.084	1.00
140_Y	144_K	2.049	1.00
75_N	87_L	2.002	1.00
314_M	318_T	1.988	1.00
290_K	294_I	1.961	1.00
14_L	224_T	1.959	1.00
50_V	54_I	1.938	1.00
345_V	349_P	1.903	1.00
241_T	244_E	1.894	1.00
257_H	262_P	1.889	1.00
12_Q	147_A	1.886	1.00
106_L	127_F	1.873	1.00
206_P	294_I	1.855	1.00
331_V	334_Y	1.820	1.00
92_C	316_A	1.795	1.00
33_A	41_G	1.781	1.00
125_F	321_I	1.771	1.00
300_F	315_L	1.757	1.00
88_N	292_A	1.752	1.00
129_A	317_A	1.745	1.00
61_P	357_W	1.740	1.00
219_A	223_A	1.731	1.00
66_N	77_I	1.729	1.00
44_M	187_L	1.727	1.00
48_Q	191_T	1.726	1.00
129_A	321_I	1.725	1.00
17_I	221_G	1.691	1.00
349_P	352_V	1.686	1.00
304_N	308_A	1.676	1.00
309_W	314_M	1.666	1.00
207_F	287_G	1.663	1.00
12_Q	143_A	1.652	1.00
332_F	336_T	1.650	1.00
155_I	159_M	1.625	1.00
171_D	174_R	1.618	1.00
56_V	222_I	1.615	1.00
56_V	218_V	1.611	1.00
172_F	175_P	1.607	1.00
110_V	123_V	1.607	1.00
8_L	12_Q	1.594	1.00
248_V	254_S	1.583	1.00
331_V	335_G	1.576	1.00
168_F	238_G	1.573	1.00
40_S	184_F	1.558	1.00
293_H	301_H	1.557	1.00
116_K	119_P	1.551	1.00
103_A	128_L	1.535	1.00
161_L	231_I	1.524	1.00
330_D	333_Y	1.514	1.00
80_G	83_I	1.511	1.00
223_A	227_L	1.510	1.00
311_L	315_L	1.505	1.00
125_F	129_A	1.503	1.00
10_F	216_K	1.481	1.00
311_L	314_M	1.464	1.00
73_K	77_I	1.463	1.00
298_E	301_H	1.460	1.00
132_I	313_A	1.450	1.00
136_G	310_L	1.449	1.00
61_P	64_Q	1.447	1.00
79_A	355_L	1.447	1.00
79_A	83_I	1.445	1.00
166_R	171_D	1.445	1.00
166_R	169_Q	1.443	1.00
165_F	235_I	1.419	1.00
28_T	105_I	1.415	1.00
124_V	324_Y	1.400	1.00
250_W	254_S	1.400	1.00
57_L	219_A	1.399	1.00
68_G	73_K	1.388	1.00
354_F	358_I	1.387	1.00
333_Y	336_T	1.380	1.00
164_S	239_C	1.360	1.00
348_I	352_V	1.337	1.00
160_L	164_S	1.337	1.00
121_A	125_F	1.330	1.00
21_L	225_S	1.327	1.00
13_T	217_A	1.327	1.00
5_E	307_N	1.311	1.00
287_G	292_A	1.311	1.00
210_D	216_K	1.305	1.00
69_K	206_P	1.295	1.00
42_W	234_L	1.294	1.00
154_L	158_M	1.293	1.00
119_P	122_V	1.292	1.00
349_P	353_W	1.282	1.00
63_L	74_L	1.280	1.00
273_L	276_T	1.268	1.00
144_K	148_Y	1.256	1.00
227_L	231_I	1.253	1.00
335_G	338_L	1.250	1.00
7_K	209_R	1.248	1.00
132_I	319_F	1.246	1.00
167_L	170_L	1.243	1.00
11_M	15_I	1.243	1.00
58_L	350_F	1.241	1.00
204_L	283_A	1.239	1.00
234_L	238_G	1.235	1.00
132_I	136_G	1.233	1.00
211_P	215_K	1.225	1.00
166_R	170_L	1.217	1.00
85_F	89_L	1.211	1.00
351_F	355_L	1.211	1.00
136_G	314_M	1.207	1.00
168_F	172_F	1.206	1.00
353_W	357_W	1.195	1.00
18_S	224_T	1.190	1.00
59_F	71_L	1.181	1.00
298_E	302_L	1.178	1.00
132_I	314_M	1.166	1.00
144_K	147_A	1.162	1.00
17_I	201_I	1.158	1.00
107_G	123_V	1.154	1.00
169_Q	173_I	1.154	1.00
68_G	77_I	1.149	1.00
46_L	230_S	1.144	1.00
79_A	351_F	1.144	1.00
348_I	354_F	1.143	1.00
302_L	305_K	1.142	1.00
180_G	183_S	1.139	1.00
8_L	143_A	1.137	1.00
327_D	330_D	1.127	1.00
242_V	245_A	1.126	1.00
122_V	126_I	1.122	1.00
16_M	204_L	1.112	1.00
75_N	83_I	1.107	1.00
145_V	149_I	1.107	1.00
318_T	322_T	1.107	1.00
309_W	313_A	1.105	1.00
337_L	341_A	1.102	1.00
123_V	126_I	1.099	1.00
283_A	287_G	1.098	1.00
287_G	290_K	1.096	1.00
118_T	122_V	1.092	1.00
270_D	277_W	1.089	1.00
156_I	269_F	1.084	1.00
15_I	147_A	1.083	1.00
308_A	311_L	1.082	1.00
168_F	171_D	1.073	1.00
159_M	163_F	1.070	1.00
273_L	287_G	1.067	1.00
8_L	13_T	1.062	1.00
75_N	348_I	1.060	1.00
314_M	317_A	1.058	1.00
34_A	41_G	1.057	1.00
186_S	190_K	1.048	1.00
134_H	145_V	1.044	1.00
115_L	118_T	1.044	1.00
170_L	173_I	1.044	1.00
302_L	310_L	1.040	1.00
82_F	86_L	1.040	1.00
40_S	177_F	1.034	1.00
117_N	120_M	1.033	1.00
126_I	130_V	1.033	1.00
239_C	255_L	1.029	1.00
248_V	251_P	1.027	1.00
168_F	173_I	1.025	1.00
205_V	214_V	1.025	1.00
158_M	162_M	1.022	1.00
308_A	312_T	1.018	1.00
102_Q	277_W	1.013	1.00
101_F	193_L	1.008	1.00
276_T	283_A	1.005	1.00
270_D	274_Q	1.002	1.00
316_A	319_F	1.002	1.00
129_A	133_Y	1.001	1.00
7_K	140_Y	1.000	1.00
154_L	228_F	0.998	1.00
133_Y	136_G	0.997	1.00
167_L	171_D	0.985	1.00
130_V	275_L	0.985	1.00
287_G	293_H	0.983	1.00
181_Y	185_F	0.981	1.00
11_M	147_A	0.979	1.00
345_V	348_I	0.979	1.00
99_V	320_F	0.977	1.00
329_N	334_Y	0.969	1.00
350_F	353_W	0.967	1.00
305_K	310_L	0.967	1.00
107_G	124_V	0.967	1.00
270_D	273_L	0.959	1.00
18_S	225_S	0.957	1.00
268_R	272_F	0.956	1.00
167_L	172_F	0.955	1.00
303_K	307_N	0.951	1.00
300_F	311_L	0.946	1.00
264_I	268_R	0.944	1.00
42_W	237_I	0.942	1.00
49_G	195_F	0.938	1.00
336_T	339_G	0.936	1.00
135_V	279_A	0.934	1.00
199_E	203_Y	0.933	1.00
345_V	352_V	0.929	1.00
289_F	293_H	0.929	1.00
226_T	230_S	0.925	1.00
92_C	289_F	0.925	1.00
167_L	173_I	0.922	1.00
137_G	141_S	0.921	1.00
340_Y	343_L	0.919	1.00
161_L	235_I	0.917	1.00
283_A	286_L	0.914	1.00
160_L	256_I	0.906	1.00
277_W	280_Q	0.906	1.00
78_V	352_V	0.904	1.00
110_V	114_L	0.904	1.00
12_Q	144_K	0.903	1.00
14_L	217_A	0.899	1.00
53_I	57_L	0.895	1.00
344_I	349_P	0.894	1.00
33_A	37_G	0.894	1.00
10_F	217_A	0.892	1.00
161_L	165_F	0.891	1.00
355_L	358_I	0.891	1.00
220_L	224_T	0.891	1.00
329_N	332_F	0.887	1.00
175_P	178_E	0.887	1.00
128_L	320_F	0.886	1.00
161_L	232_T	0.873	1.00
348_I	355_L	0.871	1.00
7_K	139_V	0.869	1.00
352_V	355_L	0.865	1.00
103_A	278_T	0.862	1.00
326_K	330_D	0.860	1.00
128_L	317_A	0.855	1.00
41_G	233_L	0.854	1.00
290_K	293_H	0.851	1.00
169_Q	175_P	0.849	1.00
329_N	333_Y	0.849	1.00
308_A	313_A	0.849	1.00
346_I	353_W	0.846	1.00
346_I	349_P	0.845	1.00
313_A	317_A	0.842	1.00
11_M	144_K	0.836	1.00
106_L	271_L	0.835	1.00
271_L	274_Q	0.831	1.00
166_R	172_F	0.831	1.00
224_T	228_F	0.826	1.00
241_T	258_A	0.826	1.00
171_D	175_P	0.825	1.00
54_I	58_L	0.825	1.00
288_S	292_A	0.824	1.00
250_W	253_I	0.823	1.00
72_F	76_S	0.823	1.00
296_L	300_F	0.818	1.00
131_A	278_T	0.818	1.00
273_L	277_W	0.817	1.00
299_I	303_K	0.815	1.00
283_A	290_K	0.813	1.00
43_L	46_L	0.810	1.00
271_L	275_L	0.803	1.00
279_A	286_L	0.802	1.00
274_Q	278_T	0.801	1.00
277_W	284_C	0.797	1.00
98_I	101_F	0.797	1.00
347_T	351_F	0.796	1.00
264_I	267_E	0.795	1.00
282_F	286_L	0.793	1.00
170_L	174_R	0.793	1.00
141_S	144_K	0.792	1.00
110_V	271_L	0.790	1.00
310_L	314_M	0.788	1.00
111_G	120_M	0.786	1.00
330_D	336_T	0.782	1.00
61_P	65_K	0.781	1.00
317_A	321_I	0.781	1.00
270_D	276_T	0.779	1.00
121_A	124_V	0.778	1.00
62_F	74_L	0.772	1.00
278_T	281_Q	0.772	1.00
235_I	238_G	0.769	1.00
143_A	147_A	0.769	1.00
87_L	348_I	0.769	1.00
345_V	353_W	0.768	1.00
208_M	214_V	0.767	1.00
91_I	95_F	0.767	1.00
7_K	11_M	0.766	1.00
136_G	304_N	0.762	1.00
21_L	221_G	0.762	1.00
53_I	219_A	0.761	1.00
350_F	357_W	0.760	1.00
103_A	107_G	0.759	1.00
329_N	336_T	0.758	1.00
139_V	283_A	0.756	1.00
52_F	198_F	0.754	1.00
353_W	356_S	0.753	1.00
202_F	218_V	0.751	1.00
33_A	191_T	0.750	1.00
296_L	299_I	0.748	1.00
39_P	237_I	0.743	1.00
338_L	342_F	0.742	1.00
36_T	186_S	0.742	1.00
60_L	64_Q	0.739	1.00
277_W	287_G	0.737	1.00
141_S	145_V	0.736	1.00
348_I	358_I	0.736	1.00
312_T	316_A	0.734	1.00
282_F	285_M	0.732	1.00
22_I	25_G	0.732	1.00
346_I	354_F	0.730	1.00
276_T	279_A	0.729	1.00
306_N	310_L	0.726	1.00
327_D	331_V	0.725	1.00
26_V	232_T	0.724	1.00
169_Q	174_R	0.724	1.00
354_F	357_W	0.724	1.00
274_Q	277_W	0.723	1.00
334_Y	338_L	0.723	1.00
30_P	233_L	0.722	1.00
147_A	151_P	0.715	1.00
290_K	303_K	0.714	1.00
287_G	291_G	0.713	1.00
246_K	249_T	0.713	1.00
110_V	127_F	0.710	1.00
309_W	316_A	0.708	1.00
286_L	290_K	0.707	1.00
181_Y	184_F	0.703	1.00
215_K	218_V	0.702	1.00
32_S	35_E	0.702	1.00
312_T	315_L	0.701	1.00
138_G	141_S	0.700	1.00
273_L	283_A	0.700	1.00
165_F	231_I	0.698	1.00
273_L	280_Q	0.695	1.00
326_K	331_V	0.694	1.00
348_I	353_W	0.694	1.00
72_F	88_N	0.694	1.00
42_W	46_L	0.693	1.00
48_Q	192_L	0.691	1.00
256_I	260_E	0.690	1.00
89_L	296_L	0.689	1.00
321_I	325_P	0.688	1.00
232_T	236_V	0.686	1.00
247_T	250_W	0.684	1.00
351_F	354_F	0.684	1.00
329_N	335_G	0.683	1.00
34_A	37_G	0.683	1.00
266_I	269_F	0.678	1.00
268_R	271_L	0.677	1.00
309_W	315_L	0.676	1.00
276_T	280_Q	0.674	1.00
62_F	78_V	0.674	1.00
286_L	293_H	0.673	1.00
310_L	313_A	0.673	1.00
271_L	276_T	0.671	1.00
170_L	238_G	0.668	1.00
63_L	202_F	0.667	1.00
277_W	281_Q	0.667	1.00
63_L	214_V	0.666	1.00
183_S	186_S	0.666	1.00
43_L	184_F	0.666	1.00
285_M	289_F	0.666	1.00
150_F	153_T	0.665	1.00
129_A	132_I	0.664	1.00
212_K	216_K	0.663	1.00
19_S	150_F	0.661	1.00
56_V	198_F	0.661	1.00
231_I	235_I	0.660	1.00
43_L	47_L	0.659	1.00
42_W	230_S	0.657	1.00
284_C	288_S	0.652	1.00
266_I	273_L	0.650	1.00
46_L	50_V	0.649	1.00
105_I	109_V	0.644	1.00
47_L	188_F	0.643	1.00
255_L	258_A	0.641	1.00
281_Q	288_S	0.641	1.00
196_S	199_E	0.641	1.00
346_I	350_F	0.640	1.00
135_V	283_A	0.637	1.00
80_G	84_G	0.637	1.00
273_L	279_A	0.635	1.00
258_A	262_P	0.634	1.00
297_T	300_F	0.632	1.00
348_I	351_F	0.630	1.00
265_F	269_F	0.627	1.00
177_F	184_F	0.626	1.00
309_W	320_F	0.624	1.00
92_C	96_I	0.624	1.00
275_L	279_A	0.624	1.00
98_I	102_Q	0.624	1.00
313_A	316_A	0.624	1.00
75_N	84_G	0.622	1.00
339_G	342_F	0.621	1.00
106_L	110_V	0.618	1.00
65_K	356_S	0.618	1.00
18_S	150_F	0.617	1.00
286_L	292_A	0.616	1.00
131_A	282_F	0.615	1.00
170_L	175_P	0.615	1.00
333_Y	337_L	0.615	1.00
267_E	270_D	0.615	1.00
332_F	335_G	0.614	1.00
55_I	350_F	0.611	1.00
283_A	292_A	0.609	1.00
214_V	218_V	0.609	1.00
285_M	316_A	0.606	1.00
315_L	319_F	0.604	1.00
352_V	356_S	0.604	1.00
251_P	255_L	0.602	1.00
348_I	356_S	0.598	1.00
56_V	60_L	0.598	1.00
224_T	227_L	0.596	1.00
45_I	194_Y	0.595	1.00
17_I	21_L	0.594	1.00
109_V	253_I	0.591	1.00
20_T	200_I	0.590	1.00
82_F	85_F	0.590	1.00
229_Y	233_L	0.589	1.00
149_I	276_T	0.588	1.00
14_L	17_I	0.587	1.00
48_Q	195_F	0.586	1.00
148_Y	152_I	0.586	1.00
71_L	199_E	0.585	1.00
166_R	175_P	0.585	1.00
84_G	88_N	0.583	1.00
220_L	223_A	0.583	1.00
104_R	334_Y	0.580	1.00
318_T	321_I	0.579	1.00
107_G	110_V	0.578	1.00
331_V	338_L	0.576	1.00
271_L	287_G	0.575	1.00
33_A	187_L	0.574	1.00
40_S	176_V	0.573	1.00
302_L	313_A	0.573	1.00
287_G	294_I	0.571	1.00
284_C	291_G	0.569	1.00
179_G	182_Q	0.568	1.00
210_D	215_K	0.568	1.00
247_T	254_S	0.566	1.00
168_F	175_P	0.566	1.00
232_T	252_T	0.565	1.00
20_T	281_Q	0.565	1.00
304_N	307_N	0.564	1.00
53_I	222_I	0.562	1.00
100_C	103_A	0.561	1.00
42_W	45_I	0.560	1.00
90_Y	94_Y	0.559	1.00
102_Q	105_I	0.558	1.00
32_S	36_T	0.558	1.00
173_I	238_G	0.558	1.00
267_E	271_L	0.557	1.00
168_F	174_R	0.557	1.00
45_I	233_L	0.557	1.00
246_K	251_P	0.554	1.00
44_M	184_F	0.553	1.00
270_D	278_T	0.553	1.00
347_T	354_F	0.552	1.00
66_N	78_V	0.551	1.00
289_F	312_T	0.551	1.00
185_F	189_P	0.550	1.00
72_F	84_G	0.548	1.00
71_L	203_Y	0.547	1.00
13_T	204_L	0.547	1.00
330_D	335_G	0.547	1.00
15_I	150_F	0.546	1.00
73_K	76_S	0.545	1.00
223_A	226_T	0.540	1.00
316_A	320_F	0.540	1.00
36_T	190_K	0.539	1.00
251_P	256_I	0.537	1.00
69_K	73_K	0.537	1.00
252_T	256_I	0.536	1.00
274_Q	281_Q	0.536	1.00
314_M	319_F	0.534	1.00
39_P	242_V	0.533	1.00
244_E	247_T	0.531	1.00
239_C	259_L	0.530	1.00
11_M	14_L	0.530	1.00
122_V	125_F	0.530	1.00
173_I	177_F	0.528	1.00
269_F	274_Q	0.528	1.00
37_G	44_M	0.528	1.00
68_G	206_P	0.528	1.00
272_F	276_T	0.525	1.00
173_I	176_V	0.523	1.00
17_I	217_A	0.523	1.00
74_L	202_F	0.522	1.00
345_V	351_F	0.521	1.00
137_G	306_N	0.521	1.00
86_L	90_Y	0.520	1.00
281_Q	287_G	0.519	1.00
208_M	217_A	0.519	1.00
136_G	308_A	0.518	1.00
179_G	183_S	0.518	1.00
270_D	287_G	0.517	1.00
83_I	86_L	0.516	1.00
146_Y	279_A	0.514	1.00
304_N	312_T	0.514	1.00
344_I	348_I	0.513	1.00
269_F	276_T	0.513	1.00
60_L	218_V	0.512	1.00
287_G	303_K	0.512	1.00
269_F	273_L	0.512	1.00
309_W	322_T	0.511	1.00
112_F	257_H	0.510	1.00
148_Y	151_P	0.509	1.00
330_D	334_Y	0.509	1.00
11_M	151_P	0.508	1.00
267_E	274_Q	0.508	1.00
351_F	358_I	0.504	1.00
155_I	158_M	0.502	1.00
22_I	153_T	0.502	1.00
331_V	336_T	0.502	1.00
6_H	209_R	0.502	1.00
136_G	313_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.962	100	0.281	Contact Map
3giaA	1	0.9837	100	0.317	Contact Map
4djkA	2	0.9484	100	0.356	Contact Map
3dh4A	3	0.9511	98.7	0.838	Contact Map
2xq2A	2	0.9511	98.6	0.845	Contact Map
2jlnA	1	0.9429	98.3	0.858	Contact Map
4xp4A	1	0.962	97.7	0.879	Contact Map
4us3A	1	0.9592	97.5	0.883	Contact Map
2a65A	2	0.9538	97.4	0.886	Contact Map
4wgvA	2	0.9293	97.4	0.886	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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