GREMLIN Database
TLPB - Methyl-accepting chemotaxis protein TlpB
UniProt: P39217 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 662 (617)
Sequences: 7474 (6475)
Seq/√Len: 260.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
332_S337_G6.7091.00
327_V351_R4.2031.00
16_P334_N4.0401.00
318_K323_D3.5241.00
334_N337_G3.3381.00
34_Y38_Q3.2671.00
14_S303_R3.1431.00
316_S346_M2.8601.00
498_A519_R2.6141.00
200_E271_E2.6091.00
471_T474_Q2.5991.00
112_Y180_A2.5791.00
441_G574_I2.5421.00
455_I560_G2.5241.00
465_V546_S2.5191.00
327_V344_N2.4861.00
302_I306_T2.4601.00
255_T262_K2.4501.00
317_A338_Q2.4381.00
204_F264_A2.3641.00
481_N485_G2.3201.00
12_S15_K2.2811.00
327_V348_A2.2561.00
477_T540_V2.2241.00
498_A516_E2.2181.00
562_Q566_Q2.1891.00
303_R307_K2.1691.00
248_E269_V2.1661.00
525_S529_A2.1661.00
468_G542_E2.1501.00
472_K542_E2.1461.00
641_A644_L2.1431.00
312_L316_S2.1331.00
36_S283_A2.1201.00
520_K523_V2.1021.00
281_N285_I2.0991.00
285_I289_V2.0821.00
141_K145_A2.0761.00
472_K538_E2.0661.00
449_V568_A2.0601.00
437_A573_Q2.0511.00
319_I346_M2.0391.00
601_E604_S2.0331.00
482_V528_S2.0161.00
167_T182_D2.0151.00
238_G253_F2.0151.00
475_D478_S2.0051.00
473_S543_I2.0041.00
158_D161_T1.9971.00
479_I535_L1.9971.00
516_E519_R1.9971.00
344_N347_S1.9951.00
618_A621_Q1.9851.00
202_F216_P1.9611.00
618_A622_D1.9531.00
197_I201_G1.9241.00
629_E632_A1.9161.00
566_Q569_E1.9111.00
318_K326_E1.9051.00
133_D136_G1.9021.00
565_D569_E1.9011.00
440_S443_K1.8951.00
622_D625_A1.8931.00
571_F574_I1.8921.00
441_G571_F1.8891.00
452_M560_G1.8891.00
448_T567_T1.8801.00
230_N234_S1.8801.00
163_D186_D1.8541.00
115_S119_K1.8531.00
419_K422_Q1.8481.00
316_S343_F1.8461.00
142_Q145_A1.8421.00
470_E547_L1.8411.00
447_H450_G1.8301.00
156_Y167_T1.8081.00
99_K103_T1.8001.00
628_E632_A1.7911.00
313_V338_Q1.7911.00
551_Q555_H1.7781.00
427_I585_L1.7761.00
198_G201_G1.7471.00
580_Q583_G1.7391.00
443_K447_H1.7371.00
338_Q341_E1.7221.00
590_A593_E1.7011.00
484_N529_A1.7001.00
298_I302_I1.6971.00
313_V342_S1.6931.00
316_S339_L1.6931.00
478_S481_N1.6891.00
330_I344_N1.6471.00
555_H558_K1.6451.00
40_A279_V1.6441.00
590_A594_Q1.6421.00
202_F215_H1.6371.00
378_T382_T1.6311.00
593_E597_A1.6311.00
33_A287_L1.6301.00
466_V546_S1.6271.00
154_E209_N1.6261.00
579_T583_G1.6151.00
405_T408_N1.6051.00
533_E537_Q1.5951.00
198_G271_E1.5931.00
469_L539_I1.5921.00
429_K433_Q1.5901.00
635_E639_S1.5891.00
373_A377_Q1.5831.00
113_A172_L1.5831.00
466_V547_L1.5781.00
366_S370_E1.5691.00
608_D611_A1.5661.00
152_F168_I1.5501.00
351_R355_G1.5481.00
319_I347_S1.5431.00
309_L339_L1.5351.00
465_V545_T1.5301.00
436_E440_S1.5281.00
600_Q604_S1.5261.00
33_A37_Y1.5201.00
594_Q597_A1.5161.00
64_Q68_E1.5031.00
450_G454_T1.5021.00
317_A342_S1.5011.00
140_Y144_V1.4991.00
156_Y182_D1.4971.00
461_K464_A1.4861.00
339_L343_F1.4861.00
413_M599_S1.4841.00
471_T475_D1.4821.00
401_E404_E1.4721.00
447_H566_Q1.4711.00
472_K475_D1.4671.00
366_S369_E1.4601.00
615_E618_A1.4581.00
280_L284_V1.4541.00
495_L503_R1.4531.00
118_K135_T1.4491.00
244_F249_K1.4471.00
187_E190_T1.4441.00
555_H559_E1.4421.00
186_D190_T1.4291.00
452_M455_I1.4281.00
348_A352_S1.4281.00
95_K99_K1.4181.00
607_E611_A1.4161.00
611_A615_E1.4101.00
247_K268_F1.4101.00
316_S342_S1.4101.00
202_F266_T1.4061.00
369_E373_A1.4051.00
527_D531_E1.4041.00
28_P290_S1.3961.00
468_G471_T1.3921.00
251_M264_A1.3921.00
402_K608_D1.3851.00
151_V169_S1.3841.00
446_E450_G1.3821.00
289_V293_I1.3781.00
458_S552_S1.3731.00
190_T193_K1.3711.00
190_T194_R1.3681.00
40_A44_L1.3621.00
120_L123_Y1.3591.00
155_P164_I1.3491.00
436_E439_G1.3391.00
411_S415_E1.3371.00
22_L295_G1.3341.00
38_Q42_N1.3311.00
569_E573_Q1.3301.00
312_L339_L1.3291.00
327_V347_S1.3291.00
573_Q576_E1.3281.00
223_T227_D1.3251.00
425_S429_K1.3251.00
433_Q436_E1.3221.00
453_K565_D1.3081.00
292_V296_I1.3051.00
75_D150_A1.3041.00
199_K271_E1.3001.00
278_P282_T1.2961.00
611_A614_K1.2921.00
559_E562_Q1.2841.00
108_V181_L1.2821.00
494_A519_R1.2821.00
376_A380_K1.2801.00
459_V557_V1.2741.00
137_R158_D1.2681.00
398_A401_E1.2641.00
420_V592_V1.2631.00
530_K534_G1.2581.00
232_V264_A1.2551.00
52_A56_V1.2531.00
143_A169_S1.2501.00
138_D142_Q1.2441.00
375_A379_S1.2441.00
91_K95_K1.2431.00
466_V550_F1.2421.00
527_D530_K1.2371.00
630_Q634_M1.2351.00
224_G227_D1.2341.00
426_T429_K1.2331.00
432_I436_E1.2311.00
569_E572_K1.2291.00
401_E405_T1.2281.00
379_S382_T1.2281.00
312_L343_F1.2251.00
636_E639_S1.2251.00
621_Q625_A1.2201.00
317_A345_E1.2171.00
422_Q426_T1.2161.00
491_N519_R1.2101.00
29_V32_L1.2081.00
37_Y280_L1.2071.00
241_E269_V1.2051.00
558_K562_Q1.2041.00
630_Q644_L1.2031.00
431_S581_I1.2021.00
13_I336_F1.2021.00
249_K268_F1.2021.00
523_V527_D1.2011.00
141_K144_V1.2011.00
288_C292_V1.1991.00
100_Q103_T1.1931.00
450_G453_K1.1911.00
47_E51_S1.1901.00
143_A178_V1.1901.00
507_Y518_V1.1841.00
632_A635_E1.1801.00
469_L546_S1.1771.00
163_D184_N1.1751.00
361_V368_S1.1741.00
71_V75_D1.1671.00
203_A265_G1.1671.00
25_L28_P1.1631.00
370_E373_A1.1601.00
319_I324_L1.1591.00
637_I644_L1.1591.00
25_L294_G1.1581.00
169_S178_V1.1581.00
339_L346_M1.1581.00
330_I334_N1.1581.00
18_I22_L1.1561.00
243_T248_E1.1541.00
319_I350_L1.1541.00
114_A134_P1.1521.00
155_P207_T1.1501.00
135_T140_Y1.1501.00
324_L354_I1.1471.00
312_L340_G1.1451.00
544_S548_S1.1441.00
137_R159_E1.1411.00
572_K576_E1.1411.00
66_K70_K1.1391.00
453_K457_Q1.1371.00
269_V273_Q1.1351.00
485_G488_D1.1341.00
530_K533_E1.1331.00
249_K266_T1.1321.00
443_K446_E1.1281.00
408_N412_Q1.1281.00
230_N233_Y1.1271.00
222_T225_S1.1261.00
150_A170_K1.1241.00
625_A628_E1.1221.00
282_T285_I1.1211.00
74_I181_L1.1191.00
11_P19_A1.1171.00
41_W45_D1.1161.00
231_Q235_K1.1161.00
35_F39_S1.1161.00
308_P332_S1.1141.00
479_I536_I1.1131.00
319_I343_F1.1121.00
229_T232_V1.1121.00
14_S18_I1.1081.00
519_R523_V1.1071.00
469_L543_I1.1061.00
464_A468_G1.1031.00
442_E572_K1.1021.00
157_T162_G1.0951.00
429_K432_I1.0931.00
438_A575_Y1.0921.00
460_Q464_A1.0911.00
328_I344_N1.0911.00
284_V288_C1.0851.00
439_G443_K1.0811.00
323_D326_E1.0781.00
409_H412_Q1.0761.00
343_F347_S1.0751.00
11_P15_K1.0751.00
452_M564_T1.0711.00
457_Q460_Q1.0711.00
526_A530_K1.0681.00
484_N533_E1.0681.00
71_V152_F1.0671.00
560_G567_T1.0671.00
457_Q461_K1.0661.00
451_Q559_E1.0651.00
455_I557_V1.0631.00
277_S280_L1.0631.00
29_V287_L1.0621.00
448_T564_T1.0621.00
463_E550_F1.0621.00
21_F298_I1.0601.00
537_Q541_R1.0601.00
562_Q565_D1.0591.00
583_G586_Q1.0591.00
625_A629_E1.0591.00
231_Q236_K1.0541.00
399_Q403_L1.0511.00
207_T211_K1.0511.00
576_E580_Q1.0481.00
475_D531_E1.0461.00
618_A625_A1.0431.00
597_A601_E1.0431.00
318_K346_M1.0411.00
315_T328_I1.0411.00
313_V339_L1.0401.00
204_F266_T1.0401.00
322_G339_L1.0371.00
17_L21_F1.0351.00
413_M416_G1.0301.00
465_V549_M1.0301.00
418_S422_Q1.0301.00
45_D49_I1.0301.00
72_K75_D1.0281.00
357_I364_V1.0261.00
356_V359_T1.0231.00
277_S281_N1.0201.00
242_Y249_K1.0171.00
281_N284_V1.0151.00
36_S40_A1.0121.00
576_E579_T1.0121.00
459_V550_F1.0121.00
130_K134_P1.0111.00
247_K270_S1.0111.00
460_Q554_N1.0091.00
534_G538_E1.0081.00
464_A467_K1.0081.00
295_G299_L1.0061.00
524_Q531_E1.0021.00
421_A424_S1.0011.00
112_Y182_D1.0001.00
313_V317_A0.9991.00
122_K125_D0.9991.00
492_L499_I0.9971.00
30_G34_Y0.9971.00
315_T343_F0.9941.00
524_Q527_D0.9901.00
316_S319_I0.9871.00
154_E207_T0.9851.00
583_G587_N0.9821.00
308_P336_F0.9781.00
536_I540_V0.9761.00
479_I528_S0.9761.00
330_I340_G0.9721.00
424_S427_I0.9701.00
438_A441_G0.9681.00
410_L606_V0.9631.00
467_K471_T0.9631.00
638_S642_E0.9631.00
494_A518_V0.9631.00
412_Q598_G0.9621.00
302_I305_I0.9611.00
488_D499_I0.9611.00
610_S614_K0.9581.00
311_K329_D0.9581.00
541_R545_T0.9551.00
548_S551_Q0.9541.00
620_I627_A0.9531.00
358_Q362_E0.9531.00
16_P304_A0.9521.00
634_M644_L0.9501.00
373_A376_A0.9481.00
479_I529_A0.9461.00
153_S156_Y0.9431.00
26_I30_G0.9431.00
399_Q613_A0.9431.00
33_A283_A0.9401.00
516_E520_K0.9361.00
352_S356_V0.9361.00
204_F215_H0.9351.00
590_A597_A0.9331.00
347_S351_R0.9321.00
375_A378_T0.9311.00
136_G141_K0.9291.00
11_P16_P0.9281.00
630_Q637_I0.9271.00
60_N256_N0.9271.00
148_G171_Q0.9261.00
324_L350_L0.9261.00
375_A382_T0.9251.00
211_K214_A0.9231.00
412_Q416_G0.9211.00
167_T180_A0.9161.00
368_S375_A0.9151.00
445_V448_T0.9141.00
454_T556_E0.9131.00
614_K618_A0.9101.00
153_S169_S0.9091.00
474_Q544_S0.9091.00
70_K73_A0.9081.00
296_I300_Y0.9081.00
340_G344_N0.9081.00
439_G579_T0.9071.00
157_T164_I0.9061.00
632_A636_E0.9041.00
447_H563_I0.9021.00
412_Q415_E0.9011.00
518_V524_Q0.8991.00
227_D230_N0.8961.00
445_V571_F0.8961.00
403_L609_I0.8951.00
468_G545_T0.8901.00
522_A525_S0.8891.00
451_Q454_T0.8871.00
318_K321_S0.8861.00
45_D273_Q0.8851.00
623_I626_S0.8841.00
406_S605_A0.8831.00
362_E366_S0.8831.00
417_I595_L0.8821.00
619_G622_D0.8811.00
322_G346_M0.8781.00
411_S414_N0.8781.00
462_A550_F0.8761.00
637_I641_A0.8751.00
139_W158_D0.8731.00
68_E71_V0.8721.00
546_S550_F0.8711.00
456_D561_L0.8691.00
139_W182_D0.8691.00
279_V283_A0.8681.00
294_G298_I0.8671.00
314_S317_A0.8661.00
371_L375_A0.8661.00
641_A645_A0.8641.00
343_F346_M0.8631.00
463_E551_Q0.8611.00
333_K337_G0.8581.00
315_T326_E0.8581.00
226_G230_N0.8541.00
122_K126_S0.8510.99
531_E534_G0.8510.99
140_Y178_V0.8510.99
440_S566_Q0.8490.99
438_A442_E0.8490.99
359_T363_N0.8480.99
139_W156_Y0.8480.99
133_D137_R0.8480.99
425_S593_E0.8470.99
379_S383_E0.8470.99
435_S439_G0.8470.99
467_K551_Q0.8460.99
219_K222_T0.8450.99
153_S167_T0.8450.99
458_S556_E0.8430.99
594_Q598_G0.8420.99
20_A301_I0.8410.99
114_A137_R0.8410.99
114_A139_W0.8410.99
110_A115_S0.8400.99
409_H413_M0.8390.99
311_K314_S0.8390.99
564_T568_A0.8370.99
458_S461_K0.8350.99
56_V265_G0.8320.99
199_K274_D0.8320.99
56_V60_N0.8310.99
134_P140_Y0.8290.99
448_T455_I0.8270.99
114_A120_L0.8270.99
311_K315_T0.8250.99
138_D141_K0.8240.99
229_T233_Y0.8230.99
353_V357_I0.8230.99
11_P333_K0.8220.99
74_I170_K0.8220.99
552_S555_H0.8220.99
421_A596_S0.8200.99
119_K133_D0.8160.99
148_G173_K0.8160.99
478_S482_V0.8160.99
304_A307_K0.8160.99
92_T96_E0.8100.99
306_T310_R0.8090.99
463_E546_S0.8090.99
177_G182_D0.8080.99
459_V553_V0.8080.99
37_Y41_W0.8070.99
373_A380_K0.8060.99
310_R313_V0.8050.99
321_S349_S0.8030.99
346_M350_L0.8030.99
473_S479_I0.8020.99
525_S535_L0.8010.99
422_Q425_S0.7970.99
73_A76_Y0.7960.99
330_I337_G0.7960.99
565_D568_A0.7960.99
377_Q380_K0.7960.99
64_Q258_L0.7940.99
328_I340_G0.7920.99
480_L484_N0.7920.99
617_S624_A0.7920.99
432_I586_Q0.7910.99
158_D165_V0.7900.99
581_I585_L0.7890.99
479_I525_S0.7890.99
371_L382_T0.7880.99
177_G180_A0.7840.99
355_G359_T0.7840.99
93_L96_E0.7840.99
85_I89_K0.7830.99
399_Q612_V0.7830.99
399_Q413_M0.7830.99
407_S412_Q0.7830.99
317_A321_S0.7800.99
32_L36_S0.7800.99
158_D182_D0.7800.99
212_Y215_H0.7800.99
96_E99_K0.7790.99
208_G260_G0.7780.99
601_E605_A0.7780.99
560_G571_F0.7770.99
197_I271_E0.7750.99
415_E419_K0.7740.99
119_K126_S0.7740.99
441_G445_V0.7730.99
444_L566_Q0.7700.99
404_E408_N0.7700.99
418_S600_Q0.7700.99
337_G340_G0.7700.99
69_D72_K0.7690.99
406_S602_V0.7690.99
16_P332_S0.7670.99
413_M595_L0.7670.99
553_V560_G0.7670.99
132_F137_R0.7660.99
431_S585_L0.7650.99
119_K123_Y0.7650.99
417_I599_S0.7650.99
242_Y251_M0.7630.99
169_S180_A0.7620.99
118_K121_Y0.7620.99
51_S54_G0.7610.99
448_T518_V0.7600.99
448_T452_M0.7580.99
462_A466_V0.7580.99
15_K19_A0.7580.99
38_Q41_W0.7570.99
250_K269_V0.7570.99
330_I341_E0.7560.99
470_E474_Q0.7550.99
463_E554_N0.7550.99
109_G158_D0.7540.99
78_S170_K0.7540.99
150_A168_I0.7520.99
336_F340_G0.7520.99
196_K271_E0.7510.99
410_L417_I0.7510.99
65_N68_E0.7500.99
139_W143_A0.7470.99
480_L533_E0.7460.99
365_A369_E0.7460.99
586_Q590_A0.7460.99
410_L413_M0.7440.99
59_L62_T0.7440.99
475_D538_E0.7440.99
462_A549_M0.7430.99
100_Q104_L0.7410.99
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448_T560_G0.5800.94
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427_I431_S0.5730.94
414_N417_I0.5730.94
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617_S621_Q0.5680.93
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516_E524_Q0.5660.93
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400_S614_K0.5490.92
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588_L595_L0.5380.91
456_D558_K0.5380.91
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507_Y512_S0.5370.91
481_N484_N0.5350.91
366_S373_A0.5350.91
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255_T258_L0.5310.91
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317_A320_S0.5290.91
66_K69_D0.5280.91
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451_Q455_I0.5270.91
504_A518_V0.5270.91
340_G343_F0.5270.91
72_K76_Y0.5270.91
420_V427_I0.5260.90
424_S585_L0.5260.90
235_K262_K0.5260.90
413_M598_G0.5250.90
121_Y124_P0.5250.90
476_I495_L0.5250.90
620_I623_I0.5250.90
445_V567_T0.5240.90
218_I221_G0.5240.90
28_P294_G0.5240.90
17_L302_I0.5230.90
434_S441_G0.5220.90
326_E346_M0.5220.90
263_I268_F0.5220.90
440_S573_Q0.5220.90
120_L124_P0.5220.90
639_S643_T0.5200.90
300_Y304_A0.5200.90
598_G605_A0.5200.90
495_L518_V0.5200.90
611_A618_A0.5190.90
39_S42_N0.5180.90
595_L644_L0.5170.90
54_G57_E0.5170.90
444_L447_H0.5160.90
128_V131_G0.5160.90
469_L630_Q0.5150.89
441_G526_A0.5140.89
446_E568_A0.5140.89
589_N594_Q0.5140.89
411_S603_S0.5140.89
466_V470_E0.5140.89
59_L203_A0.5130.89
367_S370_E0.5130.89
399_Q409_H0.5120.89
574_I578_T0.5120.89
26_I291_I0.5110.89
367_S378_T0.5110.89
584_E588_L0.5110.89
128_V133_D0.5110.89
413_M427_I0.5100.89
599_S603_S0.5100.89
223_T226_G0.5100.89
402_K405_T0.5100.89
356_V360_S0.5080.89
42_N46_R0.5080.89
597_A600_Q0.5080.89
536_I539_I0.5070.89
484_N530_K0.5070.89
130_K133_D0.5060.89
131_G135_T0.5060.89
197_I200_E0.5060.89
189_L214_A0.5060.89
74_I78_S0.5050.89
398_A402_K0.5050.89
64_Q256_N0.5040.88
113_A177_G0.5030.88
442_E446_E0.5030.88
51_S55_N0.5020.88
201_G271_E0.5010.88
407_S413_M0.5000.88
20_A294_G0.5000.88
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zx6A 2 0.4577 100 0.506 Contact Map
2ch7A 2 0.4668 100 0.588 Contact Map
1qu7A 2 0.3429 100 0.609 Contact Map
3g67A 2 0.3157 100 0.673 Contact Map
4i3mA 2 0.2221 99.9 0.794 Contact Map
3lifA 1 0.3535 99.9 0.812 Contact Map
3c8cA 2 0.352 99.9 0.818 Contact Map
3li9A 2 0.3369 99.9 0.819 Contact Map
3e4oA 2 0.3263 99.9 0.82 Contact Map
3libA 3 0.3505 99.9 0.821 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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