COMFA - BACSU - GREMLIN Contacts

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COMFA - ComF operon protein 1

UniProt:	P39145	Sequences: MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKNKLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGIESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPYSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKRWIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGVLGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	463 (376)
Sequences:	14455 (9300)
Seq/√Len:	479.6

ECOLI - DEAD RECG YFJK RECQ YEJH RHLE DBPA SRMB RAPA RHLB
BACSU - COMFA RECG RECQ YPRA CSHA DBPA RECS CSHB YWQA YFML YQHH
HALSA - RAD25 Q9HN80 Q9HNB2 HELS O52003 O51997 Q9HMW5 Q9HQA5
SULSO - Q981C8 Q97X74 Q97ZF9 HELS HELX Q980C0 Q97WT0 Q97X64 Q97YC4 Q97ZV2 Q97WW1 Q97Y93 Q97ZF3 Q97YQ4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
160_I	170_V	3.362	1.00
157_F	187_L	3.274	1.00
158_P	161_E	3.126	1.00
297_P	301_W	3.120	1.00
215_S	220_L	3.048	1.00
174_T	183_L	2.968	1.00
298_R	301_W	2.942	1.00
368_E	372_Q	2.916	1.00
132_L	261_V	2.815	1.00
187_L	212_L	2.761	1.00
336_V	342_L	2.742	1.00
336_V	345_A	2.729	1.00
346_A	382_I	2.570	1.00
346_A	350_K	2.526	1.00
343_E	358_S	2.520	1.00
296_E	299_F	2.497	1.00
398_T	432_I	2.434	1.00
186_R	189_A	2.388	1.00
184_A	188_K	2.368	1.00
235_V	262_Y	2.360	1.00
159_G	163_A	2.355	1.00
336_V	382_I	2.220	1.00
371_Q	375_D	2.213	1.00
158_P	163_A	2.183	1.00
357_A	378_L	2.172	1.00
157_F	161_E	2.095	1.00
319_K	352_V	2.094	1.00
296_E	301_W	2.081	1.00
372_Q	377_Q	2.076	1.00
296_E	300_V	1.985	1.00
173_A	215_S	1.979	1.00
330_R	397_Q	1.979	1.00
297_P	300_V	1.959	1.00
354_C	380_L	1.941	1.00
417_A	431_V	1.903	1.00
124_G	144_I	1.902	1.00
198_A	201_G	1.897	1.00
102_W	105_E	1.889	1.00
357_A	372_Q	1.883	1.00
158_P	162_S	1.879	1.00
442_M	445_A	1.867	1.00
204_D	207_G	1.831	1.00
243_D	247_Q	1.822	1.00
346_A	356_T	1.820	1.00
100_Y	103_K	1.804	1.00
243_D	246_L	1.803	1.00
184_A	196_I	1.792	1.00
401_L	433_Y	1.778	1.00
195_D	211_P	1.756	1.00
63_C	66_T	1.751	1.00
66_T	69_R	1.749	1.00
128_A	155_M	1.747	1.00
442_M	446_R	1.709	1.00
185_P	189_A	1.693	1.00
295_P	299_F	1.683	1.00
367_K	371_Q	1.680	1.00
112_S	116_T	1.656	1.00
92_R	95_E	1.655	1.00
321_W	432_I	1.655	1.00
110_W	113_I	1.620	1.00
318_V	322_I	1.619	1.00
159_G	162_S	1.606	1.00
68_Q	71_F	1.605	1.00
161_E	165_N	1.603	1.00
88_V	92_R	1.599	1.00
61_N	64_G	1.590	1.00
362_E	365_H	1.577	1.00
294_L	297_P	1.555	1.00
153_T	183_L	1.550	1.00
61_N	65_Q	1.549	1.00
92_R	96_E	1.548	1.00
83_Y	86_S	1.547	1.00
197_S	210_S	1.536	1.00
65_Q	68_Q	1.530	1.00
132_L	142_L	1.527	1.00
317_A	320_R	1.501	1.00
159_G	165_N	1.499	1.00
181_L	367_K	1.493	1.00
82_L	86_S	1.484	1.00
383_T	387_L	1.476	1.00
76_S	79_K	1.466	1.00
405_S	433_Y	1.466	1.00
349_F	382_I	1.460	1.00
79_K	82_L	1.458	1.00
106_N	162_S	1.447	1.00
297_P	302_C	1.446	1.00
77_S	81_K	1.436	1.00
346_A	358_S	1.432	1.00
179_V	390_G	1.422	1.00
210_S	213_M	1.414	1.00
71_F	75_H	1.413	1.00
314_I	318_V	1.407	1.00
314_I	321_W	1.403	1.00
169_R	211_P	1.398	1.00
355_R	379_D	1.393	1.00
62_R	66_T	1.376	1.00
91_G	95_E	1.367	1.00
443_L	447_K	1.358	1.00
78_G	82_L	1.357	1.00
387_L	391_V	1.348	1.00
84_C	87_C	1.342	1.00
118_D	154_E	1.336	1.00
184_A	198_A	1.333	1.00
79_K	83_Y	1.333	1.00
88_V	91_G	1.332	1.00
83_Y	87_C	1.328	1.00
64_G	68_Q	1.321	1.00
126_Q	130_N	1.311	1.00
74_Y	77_S	1.311	1.00
299_F	302_C	1.309	1.00
185_P	371_Q	1.302	1.00
399_G	420_T	1.293	1.00
111_K	115_L	1.290	1.00
342_L	358_S	1.288	1.00
68_Q	72_S	1.287	1.00
442_M	447_K	1.276	1.00
121_L	125_Q	1.273	1.00
86_S	90_M	1.270	1.00
236_D	389_R	1.269	1.00
446_R	449_I	1.264	1.00
319_K	323_E	1.264	1.00
357_A	369_K	1.262	1.00
71_F	74_Y	1.259	1.00
69_R	72_S	1.251	1.00
187_L	214_I	1.246	1.00
90_M	94_S	1.238	1.00
291_R	294_L	1.237	1.00
442_M	449_I	1.236	1.00
64_G	67_D	1.236	1.00
444_D	447_K	1.236	1.00
180_V	198_A	1.235	1.00
76_S	80_N	1.232	1.00
66_T	70_Y	1.221	1.00
341_I	404_E	1.217	1.00
111_K	114_K	1.214	1.00
289_H	295_P	1.211	1.00
295_P	298_R	1.210	1.00
440_K	443_L	1.208	1.00
65_Q	69_R	1.207	1.00
67_D	70_Y	1.205	1.00
172_I	187_L	1.201	1.00
315_P	348_C	1.194	1.00
83_Y	89_M	1.180	1.00
345_A	402_G	1.176	1.00
282_S	285_I	1.169	1.00
345_A	382_I	1.165	1.00
160_I	187_L	1.157	1.00
101_S	104_E	1.153	1.00
144_I	263_L	1.147	1.00
70_Y	74_Y	1.144	1.00
243_D	248_F	1.141	1.00
80_N	84_C	1.140	1.00
169_R	226_A	1.129	1.00
290_H	293_P	1.127	1.00
106_N	109_N	1.124	1.00
65_Q	70_Y	1.117	1.00
86_S	89_M	1.112	1.00
339_V	343_E	1.111	1.00
171_C	227_I	1.108	1.00
107_E	111_K	1.105	1.00
158_P	165_N	1.101	1.00
77_S	80_N	1.099	1.00
332_V	398_T	1.096	1.00
157_F	160_I	1.091	1.00
162_S	165_N	1.088	1.00
406_S	413_L	1.080	1.00
67_D	71_F	1.077	1.00
81_K	84_C	1.075	1.00
63_C	67_D	1.073	1.00
78_G	81_K	1.073	1.00
440_K	444_D	1.072	1.00
160_I	231_I	1.071	1.00
443_L	446_R	1.067	1.00
289_H	292_K	1.066	1.00
112_S	193_G	1.063	1.00
94_S	97_V	1.056	1.00
314_I	322_I	1.055	1.00
91_G	94_S	1.051	1.00
272_K	276_L	1.044	1.00
310_N	313_K	1.038	1.00
94_S	98_P	1.031	1.00
385_T	416_I	1.031	1.00
110_W	114_K	1.027	1.00
332_V	400_V	1.027	1.00
73_F	76_S	1.026	1.00
323_E	352_V	1.025	1.00
82_L	85_R	1.024	1.00
174_T	180_V	1.022	1.00
187_L	196_I	1.017	1.00
131_V	142_L	1.012	1.00
72_S	76_S	1.012	1.00
113_I	116_T	1.012	1.00
170_V	229_V	1.005	1.00
359_V	387_L	1.005	1.00
440_K	447_K	0.999	1.00
89_M	93_V	0.998	1.00
342_L	360_H	0.997	1.00
77_S	83_Y	0.994	1.00
319_K	348_C	0.994	1.00
184_A	214_I	0.988	1.00
75_H	78_G	0.984	1.00
368_E	371_Q	0.982	1.00
198_A	203_S	0.980	1.00
64_G	69_R	0.980	1.00
317_A	324_F	0.977	1.00
89_M	94_S	0.975	1.00
73_F	79_K	0.974	1.00
156_L	263_L	0.973	1.00
93_V	97_V	0.970	1.00
119_G	125_Q	0.970	1.00
244_Q	248_F	0.970	1.00
316_P	320_R	0.969	1.00
292_K	295_P	0.967	1.00
199_L	202_G	0.966	1.00
83_Y	88_V	0.965	1.00
163_A	229_V	0.965	1.00
109_N	113_I	0.965	1.00
95_E	98_P	0.964	1.00
115_L	192_Q	0.962	1.00
284_R	287_A	0.960	1.00
338_S	341_I	0.958	1.00
90_M	96_E	0.954	1.00
96_E	99_L	0.953	1.00
87_C	90_M	0.952	1.00
444_D	449_I	0.951	1.00
205_D	208_R	0.950	1.00
113_I	154_E	0.949	1.00
62_R	65_Q	0.949	1.00
66_T	71_F	0.944	1.00
200_Y	203_S	0.943	1.00
93_V	96_E	0.941	1.00
309_L	313_K	0.940	1.00
293_P	296_E	0.938	1.00
321_W	324_F	0.937	1.00
244_Q	247_Q	0.933	1.00
90_M	93_V	0.932	1.00
323_E	327_K	0.924	1.00
133_I	162_S	0.922	1.00
317_A	321_W	0.921	1.00
156_L	231_I	0.920	1.00
109_N	112_S	0.920	1.00
290_H	294_L	0.919	1.00
230_M	260_L	0.919	1.00
75_H	79_K	0.918	1.00
86_S	92_R	0.916	1.00
370_V	393_V	0.916	1.00
106_N	113_I	0.914	1.00
331_P	395_K	0.913	1.00
87_C	96_E	0.911	1.00
322_I	332_V	0.910	1.00
91_G	99_L	0.908	1.00
361_A	386_I	0.902	1.00
395_K	425_E	0.902	1.00
157_F	163_A	0.900	1.00
82_L	88_V	0.898	1.00
321_W	325_H	0.894	1.00
85_R	89_M	0.892	1.00
115_L	193_G	0.890	1.00
298_R	302_C	0.890	1.00
70_Y	73_F	0.889	1.00
67_D	74_Y	0.888	1.00
61_N	66_T	0.887	1.00
63_C	68_Q	0.887	1.00
67_D	73_F	0.886	1.00
168_L	228_D	0.885	1.00
112_S	115_L	0.882	1.00
295_P	301_W	0.881	1.00
270_E	274_K	0.880	1.00
95_E	99_L	0.877	1.00
322_I	326_V	0.874	1.00
296_E	302_C	0.874	1.00
79_K	88_V	0.873	1.00
443_L	448_H	0.872	1.00
443_L	449_I	0.872	1.00
96_E	100_Y	0.868	1.00
230_M	250_V	0.868	1.00
74_Y	78_G	0.868	1.00
87_C	91_G	0.863	1.00
218_H	223_Y	0.861	1.00
120_K	126_Q	0.860	1.00
401_L	417_A	0.856	1.00
146_A	150_A	0.853	1.00
374_R	395_K	0.850	1.00
81_K	85_R	0.845	1.00
107_E	110_W	0.843	1.00
440_K	445_A	0.839	1.00
92_R	98_P	0.836	1.00
343_E	360_H	0.834	1.00
444_D	448_H	0.834	1.00
197_S	213_M	0.834	1.00
350_K	356_T	0.833	1.00
331_P	379_D	0.832	1.00
179_V	182_E	0.826	1.00
365_H	368_E	0.824	1.00
314_I	325_H	0.823	1.00
445_A	448_H	0.822	1.00
69_R	73_F	0.822	1.00
123_S	126_Q	0.822	1.00
65_Q	71_F	0.820	1.00
129_A	158_P	0.819	1.00
293_P	300_V	0.819	1.00
341_I	345_A	0.817	1.00
80_N	83_Y	0.815	1.00
313_K	317_A	0.814	1.00
325_H	330_R	0.814	1.00
199_L	223_Y	0.812	1.00
401_L	416_I	0.811	1.00
401_L	405_S	0.810	1.00
78_G	83_Y	0.810	1.00
294_L	298_R	0.806	1.00
203_S	207_G	0.804	1.00
364_K	368_E	0.800	1.00
63_C	70_Y	0.799	1.00
169_R	228_D	0.799	1.00
201_G	204_D	0.798	1.00
88_V	95_E	0.798	1.00
89_M	92_R	0.794	1.00
250_V	253_A	0.794	1.00
314_I	404_E	0.793	1.00
72_S	75_H	0.792	1.00
264_S	267_P	0.788	1.00
322_I	354_C	0.785	1.00
64_G	70_Y	0.782	1.00
445_A	449_I	0.778	1.00
185_P	188_K	0.775	1.00
164_L	211_P	0.774	1.00
61_N	67_D	0.773	1.00
80_N	86_S	0.770	1.00
92_R	99_L	0.769	1.00
333_F	396_V	0.768	1.00
108_S	111_K	0.767	1.00
294_L	299_F	0.763	1.00
73_F	77_S	0.762	1.00
77_S	84_C	0.761	1.00
229_V	261_V	0.761	1.00
349_F	356_T	0.760	1.00
173_A	220_L	0.760	1.00
128_A	132_L	0.758	1.00
62_R	68_Q	0.757	1.00
419_R	422_R	0.756	1.00
293_P	297_P	0.753	1.00
441_S	444_D	0.752	1.00
89_M	95_E	0.752	1.00
181_L	185_P	0.750	1.00
436_F	439_T	0.748	1.00
81_K	89_M	0.746	1.00
247_Q	277_N	0.741	1.00
94_S	99_L	0.741	1.00
85_R	88_V	0.741	1.00
75_H	80_N	0.741	1.00
314_I	317_A	0.740	1.00
74_Y	81_K	0.737	1.00
322_I	349_F	0.736	1.00
361_A	366_R	0.735	1.00
365_H	369_K	0.732	1.00
217_T	232_I	0.730	1.00
398_T	430_D	0.728	1.00
129_A	133_I	0.728	1.00
291_R	295_P	0.723	1.00
120_K	125_Q	0.723	1.00
218_H	237_A	0.722	1.00
103_K	114_K	0.720	1.00
108_S	112_S	0.717	1.00
61_N	69_R	0.716	1.00
121_L	129_A	0.713	1.00
160_I	163_A	0.707	1.00
69_R	74_Y	0.707	1.00
286_P	289_H	0.707	1.00
213_M	227_I	0.706	1.00
294_L	302_C	0.706	1.00
107_E	114_K	0.704	1.00
330_R	398_T	0.703	1.00
315_P	319_K	0.702	1.00
325_H	398_T	0.700	1.00
76_S	81_K	0.700	1.00
195_D	209_L	0.699	1.00
84_C	88_V	0.699	1.00
62_R	72_S	0.698	1.00
310_N	316_P	0.694	1.00
283_V	286_P	0.694	1.00
82_L	99_L	0.690	1.00
245_T	248_F	0.689	1.00
398_T	401_L	0.686	1.00
62_R	67_D	0.681	1.00
139_K	259_T	0.679	1.00
161_E	191_F	0.678	1.00
164_L	194_A	0.678	1.00
147_V	150_A	0.678	1.00
141_E	260_L	0.674	1.00
66_T	72_S	0.673	1.00
292_K	296_E	0.670	1.00
81_K	87_C	0.670	1.00
310_N	314_I	0.670	1.00
293_P	299_F	0.669	1.00
345_A	349_F	0.668	1.00
91_G	96_E	0.667	1.00
293_P	298_R	0.664	1.00
287_A	291_R	0.664	1.00
68_Q	73_F	0.664	1.00
122_S	125_Q	0.660	1.00
79_K	86_S	0.660	1.00
183_L	186_R	0.658	1.00
294_L	300_V	0.658	1.00
293_P	301_W	0.656	1.00
237_A	240_Y	0.656	1.00
79_K	85_R	0.655	1.00
74_Y	80_N	0.652	1.00
287_A	290_H	0.651	1.00
383_T	391_V	0.651	1.00
79_K	84_C	0.650	1.00
294_L	301_W	0.649	1.00
309_L	316_P	0.649	1.00
409_T	412_A	0.648	1.00
314_I	326_V	0.643	1.00
316_P	319_K	0.642	1.00
420_T	429_G	0.641	1.00
53_I	64_G	0.641	1.00
318_V	400_V	0.638	1.00
347_A	351_G	0.638	1.00
176_R	218_H	0.637	1.00
69_R	75_H	0.637	1.00
100_Y	104_E	0.636	1.00
97_V	100_Y	0.634	1.00
156_L	183_L	0.634	1.00
141_E	280_L	0.633	1.00
157_F	164_L	0.633	1.00
76_S	85_R	0.633	1.00
277_N	281_H	0.632	1.00
240_Y	244_Q	0.629	1.00
291_R	297_P	0.629	1.00
76_S	86_S	0.628	1.00
221_L	245_T	0.627	1.00
369_K	372_Q	0.627	1.00
140_E	283_V	0.627	1.00
288_R	293_P	0.625	1.00
74_Y	79_K	0.625	1.00
117_W	122_S	0.623	0.99
229_V	259_T	0.620	0.99
333_F	383_T	0.618	0.99
385_T	412_A	0.618	0.99
292_K	299_F	0.617	0.99
326_V	378_L	0.615	0.99
348_C	352_V	0.615	0.99
91_G	98_P	0.613	0.99
157_F	162_S	0.610	0.99
418_G	421_G	0.609	0.99
179_V	391_V	0.608	0.99
142_L	261_V	0.607	0.99
74_Y	100_Y	0.607	0.99
113_I	118_D	0.605	0.99
64_G	72_S	0.605	0.99
90_M	98_P	0.605	0.99
83_Y	98_P	0.603	0.99
224_K	227_I	0.602	0.99
121_L	124_G	0.601	0.99
321_W	400_V	0.600	0.99
296_E	428_D	0.598	0.99
353_H	356_T	0.597	0.99
295_P	300_V	0.597	0.99
341_I	344_K	0.596	0.99
86_S	91_G	0.595	0.99
130_N	138_K	0.595	0.99
236_D	415_Q	0.594	0.99
83_Y	96_E	0.592	0.99
72_S	77_S	0.591	0.99
289_H	293_P	0.591	0.99
80_N	87_C	0.591	0.99
66_T	77_S	0.590	0.99
186_R	190_A	0.590	0.99
62_R	69_R	0.588	0.99
171_C	215_S	0.586	0.99
73_F	83_Y	0.586	0.99
76_S	82_L	0.584	0.99
218_H	221_L	0.581	0.99
82_L	87_C	0.580	0.99
75_H	83_Y	0.580	0.99
83_Y	93_V	0.575	0.99
185_P	374_R	0.574	0.99
85_R	92_R	0.573	0.99
331_P	397_Q	0.571	0.99
72_S	78_G	0.570	0.99
228_D	258_S	0.567	0.99
168_L	226_A	0.567	0.99
288_R	291_R	0.565	0.99
110_W	115_L	0.565	0.99
167_G	226_A	0.565	0.99
187_L	191_F	0.564	0.99
336_V	402_G	0.562	0.99
65_Q	79_K	0.562	0.99
70_Y	80_N	0.561	0.99
61_N	71_F	0.560	0.99
83_Y	92_R	0.558	0.99
194_A	201_G	0.558	0.99
335_F	416_I	0.555	0.99
289_H	294_L	0.554	0.99
194_A	211_P	0.553	0.99
84_C	95_E	0.552	0.99
90_M	97_V	0.549	0.99
344_K	348_C	0.549	0.99
76_S	88_V	0.549	0.99
199_L	204_D	0.548	0.99
53_I	63_C	0.548	0.99
81_K	86_S	0.546	0.99
347_A	350_K	0.544	0.99
70_Y	75_H	0.544	0.99
174_T	216_T	0.542	0.99
125_Q	128_A	0.542	0.99
219_Q	222_R	0.542	0.99
369_K	378_L	0.541	0.99
182_E	392_T	0.540	0.99
196_I	201_G	0.540	0.99
199_L	213_M	0.539	0.99
81_K	88_V	0.538	0.99
397_Q	425_E	0.538	0.99
92_R	97_V	0.538	0.99
85_R	91_G	0.536	0.98
63_C	74_Y	0.536	0.98
317_A	434_F	0.535	0.98
53_I	68_Q	0.534	0.98
73_F	78_G	0.533	0.98
131_V	283_V	0.532	0.98
71_F	77_S	0.532	0.98
67_D	75_H	0.531	0.98
310_N	317_A	0.531	0.98
315_P	321_W	0.530	0.98
71_F	79_K	0.530	0.98
405_S	442_M	0.530	0.98
63_C	69_R	0.529	0.98
425_E	428_D	0.529	0.98
77_S	82_L	0.527	0.98
91_G	100_Y	0.526	0.98
318_V	345_A	0.525	0.98
372_Q	378_L	0.525	0.98
61_N	70_Y	0.524	0.98
288_R	292_K	0.524	0.98
90_M	95_E	0.524	0.98
65_Q	76_S	0.523	0.98
93_V	100_Y	0.523	0.98
323_E	353_H	0.522	0.98
61_N	68_Q	0.521	0.98
79_K	97_V	0.519	0.98
79_K	90_M	0.519	0.98
131_V	285_I	0.518	0.98
313_K	325_H	0.518	0.98
130_N	133_I	0.517	0.98
331_P	396_V	0.514	0.98
269_K	272_K	0.512	0.98
129_A	132_L	0.512	0.98
202_G	205_D	0.512	0.98
84_C	94_S	0.510	0.98
161_E	164_L	0.507	0.98
72_S	79_K	0.506	0.98
334_L	402_G	0.506	0.98
283_V	287_A	0.506	0.98
285_I	289_H	0.505	0.98
80_N	85_R	0.504	0.98
321_W	434_F	0.504	0.98
111_K	193_G	0.504	0.98
315_P	402_G	0.503	0.98
124_G	128_A	0.503	0.98
85_R	90_M	0.502	0.98
282_S	308_K	0.502	0.98
68_Q	75_H	0.500	0.98
154_E	158_P	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4nhoA	1	0.8164	100	0.352	Contact Map
3fmpB	1	0.4428	100	0.355	Contact Map
4c9bA	1	0.7905	100	0.358	Contact Map
4pxaA	1	0.8531	100	0.358	Contact Map
2db3A	1	0.8423	100	0.365	Contact Map
4ljyA	1	0.8488	100	0.367	Contact Map
4w7sA	2	0.8337	100	0.367	Contact Map
3eiqA	1	0.7387	100	0.368	Contact Map
4d25A	1	0.8445	100	0.372	Contact Map
4qu4A	1	0.8035	100	0.374	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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