NUPC - BACSU - GREMLIN Contacts

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NUPC - Pyrimidine nucleoside transport protein

UniProt:	P39141	Sequences: MKYLIGIIGLIVFLGLAWIASSGKKRIKIRPIVVMLILQFILGYILLNTGIGNFLVGGFAKGFGYLLEYAAEGINFVFGGLVNADQTTFFMNVLLPIVFISALIGILQKWKVLPFIIRYIGLALSKVNGMGRLESYNAVASAILGQSEVFISLKKELGLLNQQRLYTLCASAMSTVSMSIVGAYMTMLKPEYVVTALVLNLFGGFIIASIINPYEVAKEEDMLRVEEEEKQSFFEVLGEYILDGFKVAVVVAAMLIGFVAIIALINGIFNAVFGISFQGILGYVFAPFAFLVGIPWNEAVNAGSIMATKMVSNEFVAMTSLTQNGFHFSGRTTAIVSVFLVSFANFSSIGIIAGAVKGLNEKQGNVVARFGLKLLYGATLVSFLSAAIVGLIY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	393 (390)
Sequences:	1639 (937)
Seq/√Len:	47.4

ECOLI - PSUT NUPX NUPC
BACSU - NUPC YUTK NUPG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
69_Y	267_G	4.995	1.00
298_E	329_S	4.564	1.00
296_W	299_A	4.184	1.00
363_Q	366_V	3.829	1.00
266_N	278_Q	3.761	1.00
97_I	251_V	3.698	1.00
278_Q	320_S	3.673	1.00
23_G	26_R	3.653	1.00
320_S	323_Q	3.598	1.00
167_T	205_F	3.350	1.00
302_A	336_V	3.329	1.00
22_S	373_K	3.213	1.00
162_Q	369_R	2.980	1.00
153_L	160_L	2.936	1.00
12_V	291_L	2.856	1.00
302_A	332_T	2.805	1.00
20_A	376_Y	2.751	1.00
77_V	256_I	2.742	1.00
10_L	384_L	2.708	1.00
115_F	119_Y	2.620	1.00
292_V	383_F	2.586	1.00
245_F	249_V	2.559	1.00
22_S	212_N	2.516	1.00
372_L	376_Y	2.494	1.00
35_M	206_I	2.470	1.00
106_I	233_F	2.461	1.00
203_G	381_V	2.396	1.00
18_W	24_K	2.374	1.00
57_G	61_K	2.344	1.00
157_L	360_N	2.331	1.00
158_G	362_K	2.318	1.00
241_I	257_G	2.257	1.00
308_T	320_S	2.238	1.00
346_F	372_L	2.191	1.00
17_A	210_I	2.143	1.00
66_L	103_L	2.091	1.00
22_S	162_Q	2.049	1.00
106_I	237_L	2.044	1.00
321_L	331_R	2.030	0.99
110_W	233_F	2.030	0.99
242_L	250_V	2.020	0.99
109_K	230_K	2.002	0.99
140_A	152_S	1.978	0.99
192_Y	338_V	1.975	0.99
17_A	207_I	1.961	0.99
286_A	303_G	1.947	0.99
237_L	261_I	1.926	0.99
292_V	387_A	1.924	0.99
51_I	55_L	1.893	0.99
247_V	250_V	1.850	0.99
338_V	385_S	1.831	0.99
200_N	385_S	1.829	0.99
71_A	92_N	1.820	0.99
72_E	75_N	1.807	0.99
344_A	382_S	1.801	0.99
134_E	209_S	1.789	0.99
211_I	377_G	1.788	0.99
279_G	283_Y	1.774	0.99
7_I	11_I	1.773	0.99
162_Q	366_V	1.744	0.98
130_M	135_S	1.706	0.98
161_N	214_Y	1.693	0.98
246_K	249_V	1.688	0.98
146_Q	348_S	1.671	0.98
211_I	376_Y	1.663	0.98
45_I	49_T	1.637	0.98
310_M	379_T	1.633	0.98
147_S	247_V	1.631	0.98
119_Y	122_L	1.628	0.98
200_N	203_G	1.624	0.98
20_A	211_I	1.621	0.97
123_A	127_V	1.610	0.97
44_Y	392_I	1.594	0.97
105_G	109_K	1.592	0.97
32_I	206_I	1.589	0.97
163_Q	214_Y	1.582	0.97
290_F	296_W	1.578	0.97
121_G	132_R	1.574	0.97
5_I	290_F	1.573	0.97
277_F	281_L	1.558	0.97
33_V	37_I	1.540	0.97
264_L	268_I	1.532	0.96
4_L	8_I	1.524	0.96
94_L	252_A	1.514	0.96
17_A	380_L	1.512	0.96
111_K	114_P	1.502	0.96
115_F	118_R	1.489	0.96
100_I	144_L	1.474	0.96
165_L	366_V	1.458	0.95
146_Q	352_I	1.452	0.95
344_A	379_T	1.444	0.95
275_I	280_I	1.442	0.95
166_Y	377_G	1.431	0.95
18_W	27_I	1.425	0.95
55_L	58_G	1.416	0.94
260_A	347_S	1.406	0.94
250_V	254_M	1.401	0.94
70_A	74_I	1.399	0.94
248_A	252_A	1.392	0.94
64_G	68_E	1.384	0.94
311_V	346_F	1.382	0.94
23_G	215_E	1.381	0.94
372_L	375_L	1.372	0.93
27_I	210_I	1.366	0.93
8_I	290_F	1.361	0.93
70_A	260_A	1.355	0.93
233_F	237_L	1.344	0.93
286_A	296_W	1.342	0.93
173_M	352_I	1.336	0.93
149_V	171_S	1.331	0.92
65_Y	68_E	1.324	0.92
157_L	359_L	1.321	0.92
102_A	237_L	1.318	0.92
72_E	263_A	1.309	0.92
147_S	355_A	1.308	0.92
245_F	253_A	1.303	0.92
147_S	250_V	1.294	0.91
15_G	19_I	1.273	0.91
89_F	347_S	1.263	0.90
28_K	31_P	1.262	0.90
78_F	90_F	1.259	0.90
119_Y	123_A	1.257	0.90
298_E	328_F	1.254	0.90
65_Y	69_Y	1.251	0.90
283_Y	300_V	1.251	0.90
49_T	52_G	1.249	0.90
277_F	311_V	1.241	0.89
161_N	216_V	1.239	0.89
247_V	251_V	1.238	0.89
74_I	91_M	1.236	0.89
146_Q	347_S	1.234	0.89
235_E	364_G	1.224	0.89
235_E	239_E	1.218	0.89
80_G	88_T	1.209	0.88
236_V	240_Y	1.184	0.87
102_A	241_I	1.176	0.87
137_N	149_V	1.176	0.87
286_A	300_V	1.175	0.87
265_I	277_F	1.173	0.87
389_V	392_I	1.171	0.86
140_A	144_L	1.164	0.86
161_N	164_R	1.162	0.86
382_S	385_S	1.161	0.86
297_N	301_N	1.141	0.85
331_R	335_I	1.133	0.85
80_G	84_A	1.131	0.85
200_N	338_V	1.129	0.84
321_L	336_V	1.122	0.84
61_K	64_G	1.120	0.84
81_L	88_T	1.119	0.84
289_A	306_M	1.119	0.84
96_P	179_S	1.118	0.84
16_L	288_F	1.115	0.84
16_L	376_Y	1.113	0.84
324_N	327_H	1.113	0.84
304_S	308_T	1.113	0.84
19_I	24_K	1.108	0.83
356_V	367_V	1.098	0.83
278_Q	308_T	1.095	0.83
375_L	379_T	1.091	0.82
262_I	312_S	1.085	0.82
167_T	171_S	1.083	0.82
150_F	172_A	1.079	0.82
318_M	341_V	1.068	0.81
44_Y	48_N	1.067	0.81
38_L	127_V	1.066	0.81
257_G	350_G	1.062	0.81
312_S	316_V	1.059	0.80
42_L	203_G	1.052	0.80
187_M	319_T	1.052	0.80
185_M	190_P	1.049	0.80
268_I	271_A	1.046	0.80
313_N	347_S	1.042	0.79
381_V	385_S	1.040	0.79
183_A	315_F	1.037	0.79
45_I	51_I	1.033	0.79
296_W	303_G	1.029	0.78
59_F	62_G	1.024	0.78
275_I	279_G	1.022	0.78
179_S	247_V	1.018	0.78
137_N	171_S	1.018	0.78
157_L	168_L	1.017	0.78
294_I	302_A	1.012	0.77
14_L	210_I	1.011	0.77
18_W	210_I	0.999	0.76
120_I	142_A	0.991	0.76
83_N	88_T	0.988	0.76
364_G	378_A	0.987	0.75
146_Q	351_I	0.986	0.75
40_F	388_I	0.986	0.75
346_F	375_L	0.975	0.75
250_V	355_A	0.975	0.75
146_Q	310_M	0.973	0.74
309_K	315_F	0.972	0.74
98_V	244_G	0.950	0.73
67_L	182_G	0.948	0.72
6_G	331_R	0.946	0.72
21_S	210_I	0.944	0.72
110_W	113_L	0.943	0.72
35_M	128_N	0.943	0.72
349_I	352_I	0.939	0.72
141_S	175_T	0.939	0.72
55_L	59_F	0.938	0.72
207_I	377_G	0.938	0.72
124_L	128_N	0.936	0.71
16_L	359_L	0.933	0.71
14_L	32_I	0.931	0.71
28_K	33_V	0.931	0.71
62_G	65_Y	0.927	0.71
130_M	205_F	0.922	0.70
43_G	303_G	0.917	0.70
375_L	378_A	0.915	0.70
30_R	34_V	0.913	0.70
152_S	251_V	0.910	0.69
161_N	215_E	0.906	0.69
13_F	207_I	0.904	0.69
180_I	347_S	0.903	0.69
117_I	156_E	0.902	0.69
181_V	193_V	0.901	0.69
43_G	332_T	0.900	0.68
276_S	279_G	0.899	0.68
74_I	260_A	0.898	0.68
269_F	275_I	0.894	0.68
187_M	349_I	0.888	0.67
254_M	346_F	0.887	0.67
349_I	371_G	0.887	0.67
144_L	152_S	0.886	0.67
171_S	201_L	0.885	0.67
297_N	329_S	0.885	0.67
197_L	200_N	0.880	0.67
349_I	367_V	0.878	0.67
112_V	330_G	0.870	0.66
6_G	194_V	0.858	0.65
328_F	333_T	0.854	0.64
93_V	248_A	0.853	0.64
42_L	104_I	0.847	0.64
162_Q	212_N	0.844	0.63
70_A	96_P	0.843	0.63
76_F	89_F	0.840	0.63
72_E	266_N	0.839	0.63
165_L	363_Q	0.838	0.63
349_I	375_L	0.837	0.63
138_A	205_F	0.836	0.63
278_Q	323_Q	0.835	0.63
173_M	378_A	0.834	0.62
330_G	334_A	0.834	0.62
80_G	86_Q	0.833	0.62
139_V	183_A	0.832	0.62
175_T	189_K	0.832	0.62
108_Q	155_K	0.831	0.62
206_I	382_S	0.830	0.62
54_F	57_G	0.829	0.62
141_S	181_V	0.826	0.62
13_F	384_L	0.826	0.62
248_A	303_G	0.824	0.62
224_R	227_E	0.822	0.61
104_I	144_L	0.822	0.61
243_D	246_K	0.821	0.61
162_Q	370_F	0.819	0.61
28_K	129_G	0.819	0.61
167_T	208_A	0.819	0.61
113_L	155_K	0.818	0.61
282_G	304_S	0.818	0.61
262_I	304_S	0.818	0.61
210_I	291_L	0.816	0.61
91_M	95_L	0.813	0.61
121_G	135_S	0.813	0.61
117_I	176_V	0.813	0.61
38_L	242_L	0.812	0.60
8_I	154_K	0.808	0.60
68_E	71_A	0.807	0.60
181_V	185_M	0.803	0.60
58_G	62_G	0.802	0.59
80_G	83_N	0.802	0.59
34_V	128_N	0.798	0.59
14_L	391_L	0.796	0.59
121_G	124_L	0.795	0.59
37_I	291_L	0.794	0.59
338_V	389_V	0.791	0.58
40_F	392_I	0.791	0.58
232_S	275_I	0.788	0.58
156_E	378_A	0.787	0.58
75_N	80_G	0.783	0.58
113_L	117_I	0.780	0.57
10_L	385_S	0.779	0.57
147_S	180_I	0.779	0.57
282_G	303_G	0.779	0.57
181_V	197_L	0.777	0.57
41_I	44_Y	0.777	0.57
194_V	198_V	0.776	0.57
90_F	252_A	0.775	0.57
325_G	328_F	0.772	0.57
10_L	203_G	0.772	0.57
238_G	242_L	0.771	0.56
35_M	48_N	0.770	0.56
200_N	382_S	0.768	0.56
49_T	53_N	0.767	0.56
270_N	296_W	0.767	0.56
203_G	385_S	0.767	0.56
113_L	188_L	0.761	0.55
39_Q	203_G	0.757	0.55
53_N	57_G	0.756	0.55
231_Q	369_R	0.755	0.55
163_Q	201_L	0.755	0.55
133_L	149_V	0.752	0.55
146_Q	248_A	0.750	0.54
176_V	180_I	0.748	0.54
288_F	383_F	0.748	0.54
13_F	292_V	0.746	0.54
27_I	59_F	0.746	0.54
193_V	209_S	0.746	0.54
255_L	259_V	0.744	0.54
345_N	348_S	0.743	0.54
263_A	267_G	0.742	0.54
332_T	336_V	0.742	0.54
133_L	160_L	0.740	0.53
5_I	8_I	0.738	0.53
256_I	271_A	0.738	0.53
330_G	333_T	0.737	0.53
292_V	335_I	0.734	0.53
104_I	175_T	0.734	0.53
214_Y	218_K	0.734	0.53
273_F	276_S	0.731	0.52
313_N	316_V	0.731	0.52
78_F	95_L	0.729	0.52
335_I	373_K	0.729	0.52
34_V	37_I	0.729	0.52
83_N	86_Q	0.727	0.52
128_N	168_L	0.727	0.52
77_V	255_L	0.727	0.52
163_Q	209_S	0.726	0.52
86_Q	92_N	0.725	0.52
301_N	328_F	0.723	0.52
104_I	113_L	0.723	0.52
141_S	171_S	0.723	0.52
170_A	284_V	0.720	0.51
177_S	180_I	0.720	0.51
365_N	369_R	0.718	0.51
58_G	61_K	0.717	0.51
43_G	296_W	0.716	0.51
171_S	331_R	0.716	0.51
351_I	354_G	0.716	0.51
15_G	18_W	0.714	0.51
338_V	382_S	0.713	0.51
69_Y	264_L	0.709	0.50
160_L	168_L	0.708	0.50
134_E	167_T	0.706	0.50
100_I	258_F	0.704	0.50
105_G	230_K	0.703	0.50
159_L	278_Q	0.703	0.50
106_I	261_I	0.698	0.49
137_N	168_L	0.698	0.49
310_M	344_A	0.697	0.49
82_V	91_M	0.696	0.49
36_L	388_I	0.694	0.49
254_M	351_I	0.692	0.49
379_T	382_S	0.691	0.48
103_L	253_A	0.686	0.48
71_A	75_N	0.685	0.48
294_I	336_V	0.685	0.48
137_N	204_G	0.683	0.48
335_I	384_L	0.682	0.48
104_I	306_M	0.680	0.47
192_Y	385_S	0.679	0.47
350_G	371_G	0.677	0.47
93_V	183_A	0.676	0.47
212_N	297_N	0.675	0.47
84_A	211_I	0.675	0.47
12_V	15_G	0.674	0.47
177_S	308_T	0.672	0.47
45_I	279_G	0.671	0.46
313_N	317_A	0.669	0.46
300_V	303_G	0.669	0.46
176_V	285_F	0.668	0.46
139_V	142_A	0.666	0.46
314_E	317_A	0.664	0.46
305_I	317_A	0.662	0.46
133_L	136_Y	0.661	0.45
93_V	315_F	0.656	0.45
35_M	139_V	0.655	0.45
218_K	221_D	0.655	0.45
157_L	323_Q	0.653	0.45
268_I	274_G	0.652	0.45
352_I	356_V	0.650	0.44
25_K	126_K	0.649	0.44
10_L	275_I	0.648	0.44
59_F	194_V	0.647	0.44
170_A	342_S	0.644	0.44
101_S	175_T	0.644	0.44
28_K	128_N	0.643	0.44
207_I	350_G	0.641	0.44
266_N	276_S	0.641	0.44
103_L	261_I	0.640	0.43
327_H	330_G	0.640	0.43
222_M	268_I	0.640	0.43
121_G	160_L	0.639	0.43
14_L	206_I	0.638	0.43
124_L	375_L	0.636	0.43
18_W	22_S	0.635	0.43
313_N	345_N	0.635	0.43
41_I	45_I	0.634	0.43
65_Y	267_G	0.633	0.43
353_A	388_I	0.631	0.43
8_I	291_L	0.631	0.43
29_I	33_V	0.630	0.42
112_V	115_F	0.629	0.42
225_V	294_I	0.628	0.42
332_T	337_S	0.628	0.42
112_V	284_V	0.627	0.42
54_F	58_G	0.626	0.42
52_G	134_E	0.626	0.42
14_L	27_I	0.626	0.42
355_A	367_V	0.625	0.42
111_K	115_F	0.624	0.42
251_V	368_A	0.623	0.42
383_F	386_A	0.622	0.42
111_K	254_M	0.621	0.42
108_Q	114_P	0.619	0.41
56_V	121_G	0.618	0.41
115_F	386_A	0.618	0.41
43_G	334_A	0.618	0.41
45_I	335_I	0.616	0.41
14_L	36_L	0.615	0.41
173_M	374_L	0.614	0.41
188_L	340_L	0.614	0.41
54_F	98_V	0.614	0.41
19_I	249_V	0.614	0.41
138_A	313_N	0.613	0.41
245_F	252_A	0.612	0.41
218_K	256_I	0.612	0.41
29_I	144_L	0.610	0.41
40_F	44_Y	0.609	0.40
140_A	200_N	0.609	0.40
265_I	354_G	0.609	0.40
350_G	382_S	0.609	0.40
309_K	345_N	0.606	0.40
42_L	45_I	0.603	0.40
62_G	106_I	0.601	0.40
230_K	239_E	0.601	0.40
151_I	247_V	0.600	0.40
113_L	200_N	0.599	0.39
169_C	352_I	0.599	0.39
97_I	315_F	0.592	0.39
216_V	219_E	0.591	0.39
288_F	291_L	0.590	0.39
141_S	201_L	0.590	0.39
94_L	248_A	0.589	0.39
301_N	327_H	0.589	0.39
130_M	163_Q	0.585	0.38
344_A	348_S	0.585	0.38
7_I	391_L	0.583	0.38
162_Q	363_Q	0.583	0.38
135_S	145_G	0.583	0.38
62_G	66_L	0.582	0.38
18_W	389_V	0.582	0.38
252_A	255_L	0.582	0.38
51_I	54_F	0.582	0.38
243_D	251_V	0.581	0.38
288_F	369_R	0.581	0.38
122_L	127_V	0.580	0.38
77_V	252_A	0.580	0.38
34_V	154_K	0.579	0.38
169_C	178_M	0.579	0.38
30_R	129_G	0.578	0.37
131_G	164_R	0.577	0.37
244_G	248_A	0.576	0.37
7_I	365_N	0.576	0.37
64_G	346_F	0.574	0.37
112_V	365_N	0.573	0.37
192_Y	203_G	0.573	0.37
45_I	55_L	0.573	0.37
154_K	294_I	0.572	0.37
138_A	200_N	0.572	0.37
37_I	41_I	0.571	0.37
319_T	322_T	0.571	0.37
278_Q	283_Y	0.570	0.37
15_G	210_I	0.569	0.37
335_I	379_T	0.568	0.37
236_V	307_A	0.568	0.37
118_R	325_G	0.568	0.37
217_A	221_D	0.566	0.36
14_L	29_I	0.566	0.36
106_I	110_W	0.566	0.36
275_I	283_Y	0.565	0.36
347_S	351_I	0.565	0.36
60_A	259_V	0.565	0.36
207_I	353_A	0.565	0.36
43_G	378_A	0.565	0.36
101_S	151_I	0.565	0.36
139_V	296_W	0.565	0.36
157_L	269_F	0.565	0.36
131_G	218_K	0.564	0.36
147_S	254_M	0.562	0.36
160_L	389_V	0.561	0.36
237_L	389_V	0.561	0.36
6_G	391_L	0.560	0.36
99_F	134_E	0.560	0.36
175_T	331_R	0.559	0.36
194_V	335_I	0.559	0.36
248_A	251_V	0.559	0.36
141_S	149_V	0.556	0.35
190_P	321_L	0.556	0.35
206_I	371_G	0.555	0.35
43_G	382_S	0.555	0.35
295_P	301_N	0.555	0.35
35_M	39_Q	0.555	0.35
117_I	392_I	0.554	0.35
250_V	354_G	0.553	0.35
14_L	359_L	0.553	0.35
4_L	122_L	0.552	0.35
26_R	338_V	0.552	0.35
387_A	390_G	0.552	0.35
321_L	326_F	0.551	0.35
294_I	332_T	0.549	0.35
41_I	129_G	0.548	0.35
64_G	189_K	0.547	0.35
212_N	370_F	0.547	0.35
96_P	201_L	0.546	0.35
308_T	313_N	0.546	0.35
38_L	225_V	0.543	0.34
105_G	235_E	0.542	0.34
8_I	12_V	0.542	0.34
281_L	311_V	0.542	0.34
146_Q	238_G	0.541	0.34
348_S	351_I	0.541	0.34
74_I	195_T	0.540	0.34
74_I	387_A	0.540	0.34
100_I	151_I	0.537	0.34
239_E	364_G	0.536	0.34
71_A	165_L	0.536	0.34
81_L	91_M	0.535	0.34
188_L	341_V	0.534	0.33
100_I	389_V	0.534	0.33
141_S	172_A	0.534	0.33
62_G	264_L	0.533	0.33
319_T	323_Q	0.532	0.33
360_N	366_V	0.532	0.33
234_F	346_F	0.532	0.33
4_L	237_L	0.531	0.33
188_L	294_I	0.531	0.33
142_A	201_L	0.530	0.33
128_N	171_S	0.530	0.33
192_Y	334_A	0.529	0.33
70_A	92_N	0.528	0.33
318_M	340_L	0.528	0.33
280_I	303_G	0.527	0.33
70_A	207_I	0.525	0.33
280_I	284_V	0.525	0.33
9_G	389_V	0.522	0.32
70_A	227_E	0.521	0.32
388_I	391_L	0.521	0.32
254_M	379_T	0.520	0.32
182_G	186_T	0.520	0.32
379_T	383_F	0.520	0.32
144_L	355_A	0.520	0.32
209_S	214_Y	0.519	0.32
180_I	351_I	0.519	0.32
83_N	87_T	0.517	0.32
202_F	338_V	0.516	0.32
152_S	204_G	0.516	0.32
17_A	379_T	0.516	0.32
117_I	248_A	0.515	0.32
351_I	355_A	0.515	0.32
164_R	277_F	0.513	0.32
298_E	332_T	0.513	0.32
5_I	9_G	0.513	0.32
65_Y	112_V	0.513	0.32
123_A	297_N	0.512	0.32
268_I	301_N	0.512	0.32
38_L	128_N	0.511	0.31
117_I	188_L	0.511	0.31
146_Q	303_G	0.510	0.31
35_M	56_V	0.508	0.31
121_G	127_V	0.508	0.31
180_I	348_S	0.505	0.31
295_P	299_A	0.505	0.31
139_V	171_S	0.502	0.31
109_K	297_N	0.502	0.31
82_V	87_T	0.502	0.31
199_L	386_A	0.502	0.31
251_V	260_A	0.502	0.31
349_I	373_K	0.502	0.31
184_Y	378_A	0.501	0.31
155_K	361_E	0.501	0.31
49_T	211_I	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pd6A	3	0.9695	100	0.117	Contact Map
2cfqA	1	0.8753	25.3	0.979	Contact Map
2mofA	1	0.0814	23.2	0.979	Contact Map
4oh3A	2	0.4224	10.2	0.982	Contact Map
4ikvA	1	0.4224	8	0.983	Contact Map
4f35D	2	0.888	6.1	0.984	Contact Map
1q90G	1	0.0585	3.2	0.986	Contact Map
4o6yA	2	0.4682	3.1	0.986	Contact Map
4j05A	3	0.3664	3	0.986	Contact Map
4r1iA	2	0.9389	2.9	0.986	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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