ROCE - BACSU - GREMLIN Contacts

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ROCE - Amino-acid permease RocE

UniProt:	P39137	Sequences: MNTNQDNGNQLQRTMKSRHLFMISLGGVIGTGFFLGTGFTINQAGPLGAVLSYLVGGFIMFLTMLCLGELAVAFPVSGSFQTYATKFISPAFGFAFGWLYWLGWAVTCAIEFLSAGQLMQRWFPHIDVWIWCLVFAALMFILNAITTKAFAESEFWFSGIKILIILLFIILGGAAMFGLIDLKGGEQAPFLTHFYEDGLFPNGIKAMLITMITVNFAFQGTELIGVAAGESEDPEKTIPRSIKQTVWRTLVFFVLSIIVIAGMIPWKQAGVVESPFVAVFEQIGIPYAADIMNFVILIALLSVANSGLYASTRILYAMANEGQAFKALGKTNQRGVPMYSLIVTMAVACLSLLTKFAQAETVYMVLLSLAGMSAQVGWITISLSQIMFRRKYIREGGKIEDLKFKTPLYPVLPLIGLTLNTVVLISLAFDPEQRIALYCGVPFMIICYIIYHVVIKKRQQANRQLEL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	467 (425)
Sequences:	24811 (16175)
Seq/√Len:	784.6

ECOLI - MMUP GABP LYSP YIFK AROP PROY CYCA ANSP PHEP PLAP PUUP FRLA POTE ADIC GADC YCAM YJEM YGJI YBAT ARCD CADB YJEH TNAB
BACSU - ROCE YBGF HUTM ROCC YBXG YTNA AAPA YDGF GABP YVBW ASPP YHDG YBEC YFNA STET YCGH ARCD YECA YDAO GERBB GERAB YNDE GERKB
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97ZB5 Q97X49 Q97WS3 Q97U05 Q7LXI7 Q97Z63 Q97XM0 Q97VA6 Q97U33 Q97WD4 Q97VA8 Q97VR4 Q97Y76 Q97YX9 Q97YN3 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
140_F	345_M	4.443	1.00
327_A	339_Y	4.362	1.00
387_M	391_K	3.528	1.00
57_G	250_L	3.155	1.00
379_I	417_L	3.125	1.00
330_K	339_Y	3.123	1.00
236_K	240_R	3.050	1.00
16_K	232_E	2.982	1.00
231_S	237_T	2.758	1.00
81_Q	321_E	2.737	1.00
233_D	236_K	2.688	1.00
97_G	318_M	2.666	1.00
172_G	259_V	2.635	1.00
332_N	338_M	2.632	1.00
319_A	329_G	2.605	1.00
327_A	330_K	2.478	1.00
21_F	244_Q	2.474	1.00
133_L	349_C	2.454	1.00
287_Y	291_I	2.447	1.00
170_I	174_A	2.429	1.00
438_Y	442_P	2.420	1.00
17_S	244_Q	2.400	1.00
229_G	320_N	2.324	1.00
382_S	416_G	2.311	1.00
69_E	389_R	2.300	1.00
141_I	145_I	2.235	1.00
17_S	237_T	2.218	1.00
230_E	313_R	2.181	1.00
342_I	346_A	2.176	1.00
85_T	93_G	2.173	1.00
442_P	445_I	2.170	1.00
20_L	231_S	2.152	1.00
316_Y	320_N	2.116	1.00
17_S	21_F	2.114	1.00
148_K	152_E	2.113	1.00
448_Y	452_H	2.110	1.00
278_A	281_E	2.108	1.00
414_L	418_T	2.081	1.00
140_F	341_L	2.073	1.00
159_G	163_L	2.038	1.00
137_A	349_C	2.032	1.00
144_A	338_M	2.019	1.00
240_R	244_Q	1.998	1.00
88_I	387_M	1.994	1.00
268_Q	282_Q	1.986	1.00
328_L	343_V	1.929	1.00
133_L	352_L	1.925	1.00
85_T	90_P	1.906	1.00
322_G	326_K	1.902	1.00
66_C	382_S	1.901	1.00
449_I	453_V	1.900	1.00
16_K	19_H	1.899	1.00
101_W	344_T	1.897	1.00
11_L	331_T	1.893	1.00
58_F	62_L	1.875	1.00
40_T	49_A	1.869	1.00
265_P	268_Q	1.848	1.00
88_I	383_L	1.826	1.00
132_C	352_L	1.825	1.00
19_H	155_F	1.758	1.00
243_K	247_W	1.750	1.00
278_A	282_Q	1.746	1.00
411_V	415_I	1.740	1.00
233_D	237_T	1.737	1.00
418_T	422_V	1.730	1.00
137_A	345_M	1.727	1.00
143_N	305_N	1.725	1.00
383_L	417_L	1.723	1.00
84_A	96_F	1.710	1.00
96_F	380_T	1.701	1.00
24_S	245_T	1.673	1.00
189_P	192_T	1.649	1.00
112_F	304_A	1.630	1.00
21_F	248_R	1.621	1.00
127_D	130_I	1.617	1.00
332_N	336_V	1.614	1.00
387_M	390_R	1.614	1.00
89_S	92_F	1.612	1.00
108_C	348_A	1.608	1.00
163_L	167_L	1.603	1.00
52_S	210_T	1.602	1.00
144_A	342_I	1.595	1.00
59_I	419_L	1.590	1.00
434_R	437_L	1.580	1.00
190_F	193_H	1.561	1.00
136_A	348_A	1.546	1.00
15_M	19_H	1.540	1.00
189_P	193_H	1.534	1.00
247_W	251_V	1.527	1.00
56_G	214_V	1.524	1.00
88_I	92_F	1.518	1.00
227_A	309_Y	1.516	1.00
233_D	240_R	1.498	1.00
119_M	131_W	1.460	1.00
281_E	289_A	1.456	1.00
173_G	259_V	1.453	1.00
315_L	340_S	1.444	1.00
136_A	345_M	1.436	1.00
64_M	246_V	1.422	1.00
77_S	229_G	1.422	1.00
316_Y	331_T	1.421	1.00
11_L	316_Y	1.418	1.00
133_L	137_A	1.418	1.00
62_L	415_I	1.417	1.00
164_I	295_V	1.416	1.00
326_K	329_G	1.412	1.00
112_F	136_A	1.411	1.00
311_S	344_T	1.409	1.00
339_Y	343_V	1.400	1.00
58_F	415_I	1.392	1.00
326_K	330_K	1.373	1.00
84_A	380_T	1.364	1.00
162_I	166_L	1.363	1.00
126_I	130_I	1.357	1.00
115_A	297_L	1.356	1.00
19_H	151_A	1.349	1.00
115_A	135_F	1.347	1.00
444_M	448_Y	1.345	1.00
383_L	387_M	1.344	1.00
330_K	338_M	1.338	1.00
12_Q	335_G	1.334	1.00
272_V	278_A	1.334	1.00
140_F	342_I	1.332	1.00
312_T	341_L	1.324	1.00
440_G	444_M	1.319	1.00
74_F	86_K	1.310	1.00
87_F	384_S	1.299	1.00
169_I	255_L	1.295	1.00
35_L	114_S	1.294	1.00
63_T	382_S	1.290	1.00
290_D	294_F	1.285	1.00
15_M	151_A	1.282	1.00
234_P	239_P	1.280	1.00
237_T	240_R	1.272	1.00
251_V	255_L	1.271	1.00
28_V	249_T	1.268	1.00
379_I	421_T	1.268	1.00
76_V	82_T	1.267	1.00
190_F	194_F	1.266	1.00
386_I	414_L	1.258	1.00
17_S	240_R	1.258	1.00
438_Y	445_I	1.256	1.00
446_I	450_I	1.251	1.00
176_M	262_G	1.246	1.00
15_M	20_L	1.239	1.00
64_M	242_I	1.238	1.00
315_L	324_A	1.233	1.00
82_T	86_K	1.227	1.00
41_I	49_A	1.223	1.00
168_F	172_G	1.209	1.00
66_C	413_P	1.204	1.00
111_E	303_V	1.202	1.00
422_V	426_S	1.202	1.00
91_A	451_Y	1.199	1.00
408_L	412_L	1.197	1.00
76_V	86_K	1.195	1.00
65_L	243_K	1.194	1.00
48_G	207_M	1.192	1.00
18_R	22_M	1.187	1.00
173_G	177_F	1.183	1.00
410_P	414_L	1.178	1.00
393_I	402_L	1.174	1.00
408_L	411_V	1.174	1.00
139_M	304_A	1.168	1.00
274_S	278_A	1.164	1.00
50_V	258_I	1.161	1.00
172_G	263_M	1.158	1.00
20_L	241_S	1.157	1.00
281_E	286_P	1.155	1.00
445_I	449_I	1.153	1.00
232_E	237_T	1.145	1.00
442_P	446_I	1.144	1.00
435_I	442_P	1.136	1.00
101_W	315_L	1.135	1.00
153_S	157_F	1.132	1.00
14_T	232_E	1.130	1.00
448_Y	451_Y	1.126	1.00
191_L	194_F	1.121	1.00
94_F	98_W	1.120	1.00
67_L	80_F	1.117	1.00
436_A	440_G	1.110	1.00
435_I	438_Y	1.109	1.00
129_W	133_L	1.109	1.00
390_R	410_P	1.101	1.00
385_Q	413_P	1.098	1.00
142_L	153_S	1.098	1.00
421_T	425_I	1.098	1.00
411_V	414_L	1.095	1.00
187_Q	190_F	1.091	1.00
154_E	305_N	1.085	1.00
400_E	403_K	1.084	1.00
167_L	171_L	1.083	1.00
188_A	191_L	1.082	1.00
193_H	197_D	1.081	1.00
45_G	48_G	1.074	1.00
24_S	224_I	1.074	1.00
434_R	438_Y	1.073	1.00
71_A	83_Y	1.073	1.00
339_Y	342_I	1.070	1.00
25_L	248_R	1.065	1.00
390_R	393_I	1.064	1.00
130_I	134_V	1.063	1.00
331_T	335_G	1.063	1.00
433_Q	436_A	1.059	1.00
450_I	453_V	1.057	1.00
443_F	447_C	1.055	1.00
320_N	329_G	1.055	1.00
81_Q	317_A	1.051	1.00
152_E	156_W	1.048	1.00
73_A	402_L	1.046	1.00
447_C	451_Y	1.046	1.00
409_Y	413_P	1.041	1.00
144_A	336_V	1.037	1.00
23_I	227_A	1.036	1.00
447_C	450_I	1.036	1.00
84_A	92_F	1.035	1.00
86_K	392_Y	1.031	1.00
166_L	170_I	1.028	1.00
399_I	402_L	1.026	1.00
187_Q	191_L	1.025	1.00
69_E	72_V	1.023	1.00
116_G	131_W	1.023	1.00
157_F	302_S	1.022	1.00
25_L	249_T	1.018	1.00
275_P	280_F	1.014	1.00
147_T	309_Y	1.008	1.00
134_V	138_L	1.007	1.00
54_L	254_V	1.002	1.00
389_R	393_I	0.993	1.00
174_A	178_G	0.988	1.00
140_F	144_A	0.986	1.00
432_E	435_I	0.986	1.00
393_I	399_I	0.985	1.00
228_A	238_I	0.985	1.00
382_S	417_L	0.983	1.00
137_A	141_I	0.982	1.00
189_P	194_F	0.978	1.00
441_V	445_I	0.978	1.00
379_I	420_N	0.976	1.00
265_P	282_Q	0.974	1.00
203_G	206_A	0.972	1.00
346_A	350_L	0.965	1.00
438_Y	443_F	0.965	1.00
73_A	400_E	0.964	1.00
425_I	429_F	0.962	1.00
119_M	123_F	0.955	1.00
100_Y	104_W	0.955	1.00
119_M	297_L	0.948	1.00
192_T	195_Y	0.945	1.00
431_P	435_I	0.940	1.00
208_L	422_V	0.936	1.00
144_A	332_N	0.934	1.00
437_L	440_G	0.933	1.00
417_L	421_T	0.932	1.00
439_C	443_F	0.928	1.00
62_L	412_L	0.927	1.00
330_K	333_Q	0.927	1.00
162_I	252_F	0.925	1.00
392_Y	399_I	0.921	1.00
286_P	290_D	0.920	1.00
219_Q	374_A	0.916	1.00
431_P	434_R	0.912	1.00
116_G	132_C	0.911	1.00
169_I	173_G	0.905	1.00
169_I	259_V	0.904	1.00
78_G	82_T	0.903	1.00
250_L	254_V	0.903	1.00
284_G	288_A	0.898	1.00
200_F	207_M	0.897	1.00
138_L	301_L	0.896	1.00
11_L	230_E	0.894	1.00
222_E	226_V	0.893	1.00
433_Q	437_L	0.893	1.00
430_D	433_Q	0.891	1.00
14_T	148_K	0.890	1.00
11_L	313_R	0.888	1.00
446_I	452_H	0.887	1.00
416_G	420_N	0.887	1.00
161_K	299_A	0.886	1.00
139_M	305_N	0.885	1.00
442_P	447_C	0.883	1.00
379_I	383_L	0.881	1.00
22_M	155_F	0.880	1.00
436_A	442_P	0.878	1.00
51_L	207_M	0.877	1.00
125_H	128_V	0.877	1.00
50_V	261_A	0.875	1.00
110_I	216_F	0.873	1.00
328_L	339_Y	0.873	1.00
57_G	218_F	0.873	1.00
168_F	280_F	0.873	1.00
85_T	321_E	0.871	1.00
338_M	342_I	0.866	1.00
402_L	405_K	0.862	1.00
439_C	442_P	0.861	1.00
131_W	134_V	0.859	1.00
89_S	452_H	0.857	1.00
110_I	367_L	0.857	1.00
258_I	262_G	0.854	1.00
78_G	81_Q	0.851	1.00
152_E	155_F	0.848	1.00
444_M	447_C	0.848	1.00
209_I	213_T	0.846	1.00
188_A	192_T	0.845	1.00
409_Y	412_L	0.843	1.00
285_I	288_A	0.840	1.00
430_D	434_R	0.839	1.00
308_L	345_M	0.838	1.00
17_S	241_S	0.836	1.00
72_V	403_K	0.833	1.00
437_L	444_M	0.832	1.00
29_I	32_G	0.832	1.00
19_H	152_E	0.824	1.00
401_D	405_K	0.822	1.00
244_Q	248_R	0.820	1.00
98_W	324_A	0.818	1.00
204_I	207_M	0.815	1.00
18_R	155_F	0.815	1.00
174_A	177_F	0.813	1.00
432_E	436_A	0.812	1.00
141_I	144_A	0.811	1.00
186_E	189_P	0.807	1.00
432_E	437_L	0.807	1.00
400_E	405_K	0.805	1.00
324_A	328_L	0.804	1.00
84_A	384_S	0.803	1.00
115_A	301_L	0.802	1.00
61_F	65_L	0.799	1.00
73_A	403_K	0.798	1.00
91_A	95_A	0.795	1.00
120_Q	128_V	0.791	1.00
433_Q	438_Y	0.791	1.00
129_W	352_L	0.789	1.00
345_M	349_C	0.789	1.00
223_L	310_A	0.788	1.00
333_Q	338_M	0.788	1.00
61_F	243_K	0.783	1.00
195_Y	199_L	0.781	1.00
115_A	300_L	0.781	1.00
422_V	425_I	0.779	1.00
191_L	195_Y	0.778	1.00
29_I	34_F	0.777	1.00
63_T	420_N	0.773	1.00
440_G	443_F	0.771	1.00
70_L	385_Q	0.771	1.00
280_F	283_I	0.769	1.00
192_T	196_E	0.769	1.00
435_I	448_Y	0.768	1.00
29_I	161_K	0.768	1.00
70_L	83_Y	0.765	1.00
196_E	200_F	0.763	1.00
432_E	445_I	0.761	1.00
92_F	380_T	0.759	1.00
105_A	347_V	0.757	1.00
139_M	308_L	0.753	1.00
176_M	259_V	0.749	1.00
386_I	390_R	0.749	1.00
272_V	275_P	0.748	1.00
442_P	449_I	0.747	1.00
54_L	58_F	0.746	1.00
407_P	411_V	0.742	1.00
193_H	196_E	0.741	1.00
145_I	149_A	0.739	1.00
436_A	443_F	0.733	1.00
392_Y	400_E	0.732	1.00
239_P	242_I	0.731	1.00
315_L	343_V	0.731	1.00
190_F	196_E	0.731	1.00
386_I	410_P	0.731	1.00
432_E	443_F	0.729	1.00
33_F	256_S	0.728	1.00
113_L	366_L	0.727	1.00
193_H	198_G	0.727	1.00
369_L	373_S	0.727	1.00
233_D	239_P	0.726	1.00
46_P	261_A	0.721	1.00
107_T	370_A	0.721	1.00
62_L	66_C	0.720	1.00
190_F	195_Y	0.717	1.00
424_L	427_L	0.717	1.00
386_I	413_P	0.714	1.00
263_M	279_V	0.714	1.00
87_F	387_M	0.714	1.00
133_L	353_L	0.714	1.00
21_F	241_S	0.713	1.00
28_V	245_T	0.711	1.00
385_Q	389_R	0.710	1.00
219_Q	378_W	0.710	1.00
126_I	129_W	0.707	1.00
204_I	208_L	0.707	1.00
275_P	279_V	0.704	1.00
14_T	147_T	0.703	1.00
136_A	352_L	0.702	1.00
18_R	152_E	0.701	1.00
60_M	221_T	0.701	1.00
436_A	445_I	0.699	1.00
434_R	445_I	0.695	1.00
425_I	428_A	0.693	1.00
143_N	341_L	0.693	1.00
353_L	356_F	0.693	1.00
26_G	158_S	0.690	1.00
194_F	197_D	0.690	1.00
308_L	312_T	0.689	1.00
188_A	193_H	0.689	1.00
276_F	280_F	0.687	1.00
189_P	195_Y	0.686	1.00
173_G	255_L	0.685	1.00
441_V	444_M	0.684	1.00
346_A	349_C	0.678	1.00
384_S	388_F	0.677	1.00
248_R	252_F	0.674	1.00
287_Y	290_D	0.674	1.00
188_A	194_F	0.673	1.00
437_L	441_V	0.672	1.00
14_T	18_R	0.671	1.00
431_P	438_Y	0.671	1.00
169_I	256_S	0.670	1.00
65_L	412_L	0.670	1.00
151_A	155_F	0.670	1.00
392_Y	402_L	0.670	1.00
44_A	48_G	0.668	1.00
410_P	413_P	0.667	1.00
332_N	335_G	0.666	1.00
106_V	369_L	0.666	1.00
313_R	316_Y	0.665	1.00
171_L	175_A	0.664	1.00
49_A	257_I	0.664	1.00
51_L	54_L	0.662	1.00
312_T	340_S	0.661	1.00
327_A	343_V	0.658	1.00
434_R	443_F	0.656	1.00
423_V	427_L	0.655	1.00
328_L	340_S	0.655	1.00
88_I	384_S	0.653	1.00
271_V	274_S	0.652	1.00
67_L	381_I	0.652	1.00
119_M	135_F	0.652	1.00
139_M	301_L	0.651	1.00
337_P	340_S	0.650	1.00
238_I	242_I	0.649	1.00
438_Y	441_V	0.647	1.00
437_L	442_P	0.646	1.00
269_A	272_V	0.646	1.00
143_N	309_Y	0.645	1.00
449_I	452_H	0.645	1.00
50_V	54_L	0.644	1.00
73_A	393_I	0.644	1.00
129_W	132_C	0.643	1.00
21_F	24_S	0.643	1.00
55_V	211_M	0.643	1.00
334_R	338_M	0.641	1.00
64_M	221_T	0.641	1.00
103_G	374_A	0.640	1.00
81_Q	85_T	0.640	1.00
319_A	328_L	0.639	1.00
44_A	47_L	0.639	1.00
437_L	447_C	0.638	1.00
200_F	203_G	0.637	1.00
274_S	277_V	0.637	1.00
373_S	377_G	0.636	1.00
271_V	275_P	0.634	1.00
116_G	128_V	0.634	1.00
116_G	119_M	0.632	1.00
81_Q	97_G	0.631	1.00
146_T	149_A	0.631	1.00
107_T	110_I	0.629	1.00
436_A	441_V	0.626	1.00
71_A	225_G	0.625	1.00
244_Q	247_W	0.623	1.00
122_W	294_F	0.622	1.00
229_G	316_Y	0.621	1.00
31_T	216_F	0.620	1.00
46_P	49_A	0.618	1.00
225_G	242_I	0.618	1.00
158_S	161_K	0.617	1.00
51_L	55_V	0.617	1.00
37_T	257_I	0.617	1.00
118_L	296_I	0.617	1.00
144_A	341_L	0.616	1.00
112_F	116_G	0.614	1.00
77_S	316_Y	0.612	1.00
160_I	164_I	0.611	1.00
121_R	293_N	0.611	1.00
25_L	158_S	0.611	1.00
420_N	423_V	0.610	1.00
11_L	14_T	0.610	1.00
109_A	351_S	0.609	1.00
80_F	222_E	0.609	1.00
27_G	306_S	0.609	1.00
81_Q	93_G	0.608	1.00
99_L	377_G	0.608	1.00
206_A	209_I	0.606	1.00
24_S	28_V	0.606	1.00
275_P	283_I	0.605	1.00
87_F	388_F	0.604	1.00
18_R	21_F	0.604	1.00
418_T	421_T	0.604	1.00
27_G	307_G	0.604	1.00
109_A	366_L	0.601	1.00
219_Q	222_E	0.600	1.00
435_I	439_C	0.600	1.00
68_G	72_V	0.598	1.00
39_F	364_M	0.597	1.00
311_S	315_L	0.596	1.00
234_P	237_T	0.595	1.00
186_E	190_F	0.594	1.00
111_E	304_A	0.594	1.00
111_E	300_L	0.592	1.00
264_I	268_Q	0.592	1.00
440_G	445_I	0.591	1.00
433_Q	444_M	0.591	1.00
147_T	227_A	0.590	1.00
88_I	91_A	0.590	1.00
256_S	260_I	0.589	1.00
406_T	409_Y	0.588	1.00
71_A	238_I	0.587	1.00
269_A	275_P	0.585	1.00
50_V	53_Y	0.585	1.00
62_L	416_G	0.584	1.00
433_Q	440_G	0.584	1.00
53_Y	217_A	0.583	1.00
270_G	274_S	0.580	1.00
160_I	295_V	0.580	1.00
36_G	367_L	0.580	1.00
186_E	194_F	0.580	1.00
194_F	198_G	0.579	1.00
66_C	416_G	0.579	1.00
50_V	254_V	0.579	1.00
226_V	310_A	0.578	1.00
255_L	259_V	0.576	1.00
208_L	426_S	0.575	1.00
70_L	87_F	0.574	1.00
299_A	302_S	0.573	1.00
104_W	307_G	0.571	1.00
438_Y	444_M	0.571	1.00
136_A	349_C	0.570	1.00
435_I	444_M	0.570	1.00
230_E	337_P	0.569	1.00
434_R	441_V	0.569	1.00
149_A	152_E	0.567	1.00
137_A	140_F	0.564	1.00
84_A	93_G	0.564	1.00
151_A	305_N	0.563	1.00
416_G	419_L	0.562	1.00
372_M	424_L	0.560	1.00
107_T	111_E	0.559	1.00
259_V	262_G	0.558	1.00
413_P	417_L	0.557	1.00
231_S	238_I	0.557	1.00
145_I	334_R	0.556	1.00
135_F	304_A	0.556	1.00
388_F	392_Y	0.556	1.00
122_W	293_N	0.555	1.00
379_I	424_L	0.555	1.00
11_L	77_S	0.555	1.00
27_G	223_L	0.554	1.00
248_R	251_V	0.554	1.00
172_G	176_M	0.553	1.00
89_S	93_G	0.552	1.00
433_Q	446_I	0.552	1.00
29_I	252_F	0.550	1.00
40_T	44_A	0.550	1.00
236_K	239_P	0.549	1.00
187_Q	193_H	0.548	1.00
155_F	159_G	0.547	1.00
80_F	226_V	0.547	1.00
364_M	367_L	0.547	1.00
432_E	438_Y	0.546	1.00
435_I	443_F	0.545	1.00
105_A	351_S	0.545	1.00
190_F	262_G	0.544	1.00
434_R	444_M	0.543	1.00
406_T	412_L	0.542	1.00
176_M	263_M	0.542	1.00
140_F	308_L	0.541	1.00
414_L	417_L	0.541	1.00
277_V	281_E	0.541	1.00
65_L	407_P	0.541	1.00
160_I	298_I	0.541	1.00
294_F	298_I	0.540	1.00
149_A	153_S	0.538	1.00
40_T	210_T	0.536	1.00
438_Y	447_C	0.536	1.00
431_P	445_I	0.535	1.00
96_F	377_G	0.534	1.00
434_R	440_G	0.533	1.00
20_L	227_A	0.533	1.00
64_M	68_G	0.532	1.00
30_G	34_F	0.532	1.00
219_Q	370_A	0.530	1.00
413_P	427_L	0.528	1.00
231_S	241_S	0.528	1.00
150_F	309_Y	0.526	1.00
40_T	214_V	0.526	1.00
350_L	353_L	0.525	1.00
39_F	42_N	0.524	1.00
134_V	137_A	0.523	1.00
235_E	240_R	0.522	1.00
260_I	276_F	0.522	1.00
435_I	445_I	0.521	1.00
171_L	285_I	0.520	1.00
256_S	276_F	0.520	1.00
393_I	400_E	0.519	1.00
448_Y	453_V	0.519	1.00
315_L	319_A	0.518	1.00
313_R	331_T	0.518	1.00
276_F	279_V	0.517	1.00
138_L	142_L	0.516	1.00
100_Y	377_G	0.516	1.00
312_T	344_T	0.516	1.00
417_L	420_N	0.516	1.00
415_I	418_T	0.515	1.00
436_A	444_M	0.515	1.00
112_F	139_M	0.515	1.00
79_S	225_G	0.514	1.00
147_T	151_A	0.513	1.00
399_I	403_K	0.513	1.00
37_T	260_I	0.513	1.00
235_E	403_K	0.513	1.00
195_Y	198_G	0.511	1.00
389_R	409_Y	0.511	1.00
111_E	114_S	0.511	1.00
226_V	314_I	0.510	1.00
356_F	363_Y	0.509	1.00
327_A	331_T	0.508	1.00
273_E	277_V	0.507	1.00
343_V	347_V	0.506	1.00
437_L	443_F	0.506	1.00
66_C	406_T	0.506	1.00
34_F	161_K	0.504	1.00
304_A	307_G	0.503	1.00
154_E	302_S	0.503	1.00
388_F	393_I	0.502	1.00
420_N	424_L	0.502	1.00
93_G	97_G	0.501	1.00
196_E	199_L	0.501	1.00
166_L	169_I	0.500	1.00
253_F	257_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.8951	100	0.295	Contact Map
3giaA	1	0.9101	100	0.359	Contact Map
4djkA	2	0.8779	100	0.36	Contact Map
3dh4A	3	0.9143	99.1	0.843	Contact Map
2xq2A	2	0.9165	99.1	0.847	Contact Map
2jlnA	1	0.9101	98.8	0.861	Contact Map
4xp4A	1	0.9229	98.3	0.881	Contact Map
2a65A	2	0.9208	98.2	0.885	Contact Map
4wgvA	2	0.788	97.7	0.899	Contact Map
4us3A	1	0.8415	97.7	0.899	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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