YPEB - BACSU - GREMLIN Contacts

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YPEB - Sporulation protein YpeB

UniProt:	P38490	Sequences: MIRGILIAVLGIAIVGTGYWGYKEHQEKDAVLLHAENNYQRAFHELTYQVDQLHDKIGTTLAMNSQKSLSPALIDVWRITSEAHNSVSQLPLTLMPFNKTEELLSKIGDFSYKTSVRDLDQKPLDKNEYTSLNKLYQQSEDIQNELRHVQHLVMSKNLRWMDVEMALASDEKQSDNTIINSFKTVEKNVGAFSTGTDLGPSFTSTKKEEKGFSHLKGKQISEQEAKQIAERFAPDDNYSIKVVKSGKKTNRDVYSISMKDPDHKAVIYMDITKKGGHPVYLIQNREVKDQKISLNDGSNRALAFLKKNGFETDDLEIDESAQYDKIGVFSYVPVENKVRMYPEAIRMKVALDDGEVVGFSARDFLTSHRKRTIPKPAITEAEAKSKLNKNVQVRETRLALITNELGQEVLCYEMLGTIENDTFRMYINAKDGSEEKVEKLKNAEPIYKDL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	450 (432)
Sequences:	356 (306)
Seq/√Len:	14.7

BACSU - YPEB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
428_N	435_E	6.728	1.00
285_R	350_A	6.497	1.00
373_I	400_L	4.657	1.00
285_R	352_D	4.520	1.00
343_E	368_H	3.978	1.00
371_R	408_E	3.928	1.00
50_V	146_L	3.888	1.00
301_A	331_Y	3.832	1.00
334_V	337_K	3.825	1.00
380_E	396_T	3.770	1.00
345_I	356_V	3.715	1.00
368_H	371_R	3.637	0.99
333_P	340_M	3.506	0.99
297_G	329_F	3.429	0.99
332_V	339_R	3.333	0.99
302_L	331_Y	3.166	0.98
41_R	89_Q	3.102	0.98
384_K	393_V	3.013	0.98
293_S	296_D	2.906	0.97
109_D	343_E	2.888	0.97
379_T	382_E	2.652	0.95
338_V	400_L	2.566	0.94
21_G	37_N	2.512	0.94
340_M	400_L	2.487	0.93
32_L	161_M	2.463	0.93
350_A	353_D	2.404	0.92
117_R	128_E	2.385	0.92
232_F	308_N	2.382	0.92
314_D	364_F	2.377	0.91
218_K	224_E	2.341	0.91
398_L	410_L	2.326	0.90
221_S	404_E	2.304	0.90
218_K	375_K	2.280	0.90
85_N	303_A	2.252	0.89
111_S	192_F	2.188	0.88
304_F	308_N	2.141	0.86
372_T	382_E	2.136	0.86
198_L	201_S	2.046	0.84
10_L	13_A	2.030	0.83
409_V	428_N	2.009	0.82
303_A	307_K	2.009	0.82
20_W	24_E	2.008	0.82
285_R	353_D	2.004	0.82
315_L	333_P	1.961	0.81
278_P	359_F	1.935	0.80
383_A	414_M	1.922	0.79
14_I	132_L	1.916	0.79
130_T	385_S	1.888	0.78
279_V	365_L	1.846	0.77
220_I	225_A	1.846	0.77
199_G	413_E	1.842	0.76
163_V	167_L	1.765	0.73
219_Q	274_K	1.762	0.73
220_I	271_I	1.761	0.73
198_L	202_F	1.749	0.73
234_P	356_V	1.744	0.72
262_D	338_V	1.737	0.72
299_N	302_L	1.727	0.72
76_V	385_S	1.720	0.71
311_E	382_E	1.706	0.71
219_Q	273_K	1.704	0.70
21_G	24_E	1.693	0.70
346_R	402_T	1.673	0.69
333_P	368_H	1.670	0.69
222_E	244_K	1.645	0.68
28_K	32_L	1.616	0.66
231_R	308_N	1.612	0.66
319_E	344_A	1.605	0.66
316_E	334_V	1.591	0.65
387_L	393_V	1.579	0.64
193_S	200_P	1.578	0.64
37_N	42_A	1.577	0.64
409_V	435_E	1.567	0.64
281_L	349_V	1.547	0.63
329_F	332_V	1.536	0.62
343_E	371_R	1.529	0.62
311_E	314_D	1.528	0.62
271_I	278_P	1.528	0.62
368_H	408_E	1.502	0.60
111_S	273_K	1.500	0.60
424_R	438_E	1.488	0.60
229_A	269_M	1.477	0.59
225_A	271_I	1.472	0.59
273_K	362_R	1.467	0.58
341_Y	413_E	1.455	0.58
244_K	273_K	1.444	0.57
201_S	402_T	1.437	0.57
303_A	393_V	1.426	0.56
283_Q	357_V	1.420	0.56
88_S	395_E	1.415	0.56
42_A	411_C	1.404	0.55
343_E	402_T	1.403	0.55
316_E	397_R	1.400	0.55
337_K	370_K	1.396	0.55
343_E	398_L	1.382	0.54
16_G	22_Y	1.382	0.54
373_I	429_A	1.378	0.54
332_V	363_D	1.370	0.53
348_K	358_G	1.368	0.53
13_A	425_M	1.351	0.52
94_L	179_I	1.351	0.52
224_E	345_I	1.351	0.52
223_Q	226_K	1.349	0.52
49_Q	331_Y	1.341	0.52
102_E	106_K	1.335	0.51
118_D	121_Q	1.326	0.51
301_A	347_M	1.325	0.51
224_E	227_Q	1.318	0.50
267_I	283_Q	1.314	0.50
331_Y	347_M	1.307	0.50
25_H	32_L	1.306	0.50
271_I	356_V	1.305	0.50
329_F	411_C	1.299	0.49
196_T	199_G	1.294	0.49
377_A	430_K	1.282	0.48
197_D	309_G	1.276	0.48
199_G	273_K	1.275	0.48
226_K	230_E	1.267	0.47
290_Q	322_Q	1.261	0.47
356_V	412_Y	1.256	0.47
105_S	325_K	1.239	0.46
282_I	440_L	1.236	0.46
238_Y	356_V	1.233	0.46
216_K	306_K	1.219	0.45
127_N	392_Q	1.205	0.44
129_Y	394_R	1.201	0.44
288_K	335_E	1.198	0.44
310_F	359_F	1.185	0.43
394_R	417_T	1.182	0.43
299_N	375_K	1.181	0.43
241_K	299_N	1.177	0.42
340_M	357_V	1.173	0.42
15_V	186_E	1.167	0.42
200_P	426_Y	1.167	0.42
124_L	383_A	1.163	0.42
39_Y	46_L	1.163	0.42
159_R	162_D	1.161	0.42
125_D	391_V	1.147	0.41
333_P	343_E	1.145	0.41
7_I	10_L	1.145	0.41
345_I	364_F	1.143	0.41
42_A	76_V	1.142	0.41
20_W	89_Q	1.134	0.40
252_D	273_K	1.121	0.39
103_L	146_L	1.115	0.39
142_I	156_K	1.098	0.38
183_K	392_Q	1.097	0.38
199_G	341_Y	1.093	0.38
422_T	440_L	1.093	0.38
370_K	374_P	1.085	0.38
269_M	337_K	1.082	0.37
59_T	271_I	1.081	0.37
416_G	423_F	1.078	0.37
57_I	310_F	1.078	0.37
229_A	232_F	1.075	0.37
285_R	355_E	1.073	0.37
74_I	441_K	1.072	0.37
45_E	363_D	1.062	0.36
30_A	82_E	1.059	0.36
46_L	182_F	1.057	0.36
49_Q	84_H	1.054	0.36
198_L	203_T	1.053	0.36
156_K	402_T	1.052	0.36
217_G	349_V	1.052	0.36
76_V	240_I	1.047	0.36
389_K	393_V	1.047	0.36
124_L	128_E	1.046	0.36
232_F	304_F	1.046	0.36
58_G	423_F	1.041	0.35
338_V	429_A	1.039	0.35
99_K	145_E	1.036	0.35
192_F	411_C	1.032	0.35
15_V	19_Y	1.027	0.35
125_D	349_V	1.022	0.34
62_A	73_L	1.019	0.34
259_K	293_S	1.019	0.34
301_A	327_G	1.013	0.34
410_L	429_A	1.012	0.34
155_S	337_K	1.011	0.34
24_E	332_V	1.007	0.34
20_W	43_F	1.006	0.34
22_Y	26_Q	1.003	0.33
197_D	360_S	1.002	0.33
340_M	370_K	0.998	0.33
383_A	427_I	0.998	0.33
297_G	351_L	0.997	0.33
138_Q	256_I	0.994	0.33
306_K	311_E	0.994	0.33
252_D	282_I	0.992	0.33
100_T	103_L	0.991	0.33
260_D	340_M	0.989	0.33
202_F	346_R	0.987	0.33
414_M	425_M	0.983	0.32
374_P	430_K	0.982	0.32
106_K	197_D	0.980	0.32
24_E	32_L	0.979	0.32
299_N	381_A	0.979	0.32
233_A	367_S	0.977	0.32
137_Q	306_K	0.975	0.32
339_R	397_R	0.975	0.32
24_E	161_M	0.975	0.32
110_F	128_E	0.970	0.32
76_V	387_L	0.966	0.32
229_A	376_P	0.964	0.32
99_K	176_N	0.964	0.32
69_L	225_A	0.964	0.32
14_I	334_V	0.962	0.31
106_K	109_D	0.962	0.31
226_K	283_Q	0.960	0.31
155_S	387_L	0.956	0.31
59_T	193_S	0.947	0.31
65_S	164_E	0.947	0.31
125_D	226_K	0.945	0.31
87_V	374_P	0.944	0.31
15_V	323_Y	0.943	0.31
149_V	359_F	0.940	0.30
138_Q	192_F	0.940	0.30
221_S	272_T	0.939	0.30
36_E	46_L	0.938	0.30
351_L	416_G	0.938	0.30
368_H	374_P	0.933	0.30
134_K	303_A	0.933	0.30
417_T	422_T	0.931	0.30
318_D	362_R	0.930	0.30
368_H	412_Y	0.929	0.30
100_T	383_A	0.928	0.30
153_V	423_F	0.928	0.30
85_N	272_T	0.928	0.30
50_V	284_N	0.928	0.30
223_Q	306_K	0.927	0.30
341_Y	408_E	0.920	0.29
335_E	368_H	0.920	0.29
287_V	357_V	0.920	0.29
143_Q	439_K	0.918	0.29
236_D	326_I	0.916	0.29
53_L	158_L	0.916	0.29
7_I	14_I	0.916	0.29
64_N	300_R	0.912	0.29
336_N	377_A	0.910	0.29
370_K	392_Q	0.907	0.29
234_P	368_H	0.907	0.29
134_K	137_Q	0.907	0.29
230_E	349_V	0.906	0.29
32_L	168_A	0.905	0.29
249_T	253_V	0.904	0.29
329_F	437_V	0.903	0.29
173_Q	337_K	0.903	0.29
13_A	88_S	0.898	0.28
403_N	407_Q	0.896	0.28
130_T	296_D	0.895	0.28
57_I	196_T	0.895	0.28
134_K	281_L	0.892	0.28
321_A	356_V	0.889	0.28
124_L	409_V	0.883	0.28
59_T	102_E	0.883	0.28
107_I	140_E	0.882	0.28
367_S	391_V	0.882	0.28
172_K	359_F	0.882	0.28
235_D	238_Y	0.881	0.28
330_S	402_T	0.881	0.28
343_E	408_E	0.881	0.28
31_V	161_M	0.881	0.28
302_L	406_G	0.880	0.28
134_K	227_Q	0.878	0.28
51_D	364_F	0.877	0.27
295_N	299_N	0.877	0.27
201_S	346_R	0.877	0.27
15_V	337_K	0.877	0.27
67_K	389_K	0.877	0.27
198_L	402_T	0.876	0.27
227_Q	372_T	0.873	0.27
144_N	361_A	0.873	0.27
62_A	423_F	0.871	0.27
391_V	440_L	0.870	0.27
288_K	326_I	0.868	0.27
24_E	89_Q	0.867	0.27
218_K	221_S	0.866	0.27
8_A	75_D	0.866	0.27
112_Y	435_E	0.863	0.27
43_F	88_S	0.863	0.27
59_T	196_T	0.862	0.27
330_S	346_R	0.862	0.27
20_W	136_Y	0.858	0.27
41_R	45_E	0.858	0.27
253_V	279_V	0.855	0.27
12_I	126_K	0.853	0.26
97_F	149_V	0.853	0.26
109_D	214_H	0.852	0.26
25_H	98_N	0.851	0.26
21_G	43_F	0.851	0.26
130_T	227_Q	0.849	0.26
219_Q	228_I	0.849	0.26
382_E	385_S	0.847	0.26
15_V	224_E	0.845	0.26
78_R	112_Y	0.844	0.26
356_V	398_L	0.844	0.26
15_V	309_G	0.844	0.26
403_N	435_E	0.843	0.26
66_Q	129_Y	0.841	0.26
15_V	430_K	0.841	0.26
15_V	18_G	0.838	0.26
124_L	399_A	0.837	0.26
233_A	389_K	0.837	0.26
169_S	404_E	0.834	0.26
201_S	343_E	0.834	0.26
304_F	400_L	0.832	0.26
365_L	411_C	0.831	0.25
5_I	9_V	0.830	0.25
281_L	366_T	0.829	0.25
336_N	431_D	0.827	0.25
67_K	247_K	0.826	0.25
287_V	293_S	0.826	0.25
421_D	439_K	0.822	0.25
412_Y	421_D	0.820	0.25
216_K	277_H	0.818	0.25
202_F	402_T	0.815	0.25
339_R	381_A	0.815	0.25
33_L	37_N	0.814	0.25
392_Q	399_A	0.813	0.25
7_I	38_N	0.812	0.25
333_P	360_S	0.811	0.25
105_S	134_K	0.809	0.25
109_D	155_S	0.808	0.25
133_N	273_K	0.806	0.24
92_L	294_L	0.801	0.24
92_L	159_R	0.801	0.24
26_Q	286_E	0.800	0.24
161_M	166_A	0.798	0.24
267_I	353_D	0.796	0.24
301_A	349_V	0.796	0.24
87_V	102_E	0.796	0.24
232_F	302_L	0.795	0.24
130_T	353_D	0.795	0.24
272_T	279_V	0.793	0.24
197_D	402_T	0.791	0.24
6_L	328_V	0.790	0.24
372_T	391_V	0.790	0.24
182_F	200_P	0.789	0.24
193_S	420_N	0.789	0.24
288_K	337_K	0.787	0.24
260_D	353_D	0.787	0.24
193_S	199_G	0.787	0.24
209_E	362_R	0.784	0.24
197_D	346_R	0.783	0.24
111_S	200_P	0.782	0.23
27_E	32_L	0.780	0.23
336_N	381_A	0.777	0.23
233_A	279_V	0.776	0.23
249_T	273_K	0.776	0.23
256_I	261_P	0.774	0.23
294_L	327_G	0.772	0.23
179_I	183_K	0.772	0.23
163_V	166_A	0.771	0.23
163_V	178_I	0.770	0.23
126_K	378_I	0.768	0.23
110_F	160_W	0.767	0.23
398_L	402_T	0.765	0.23
244_K	249_T	0.762	0.23
124_L	427_I	0.755	0.22
367_S	439_K	0.752	0.22
241_K	379_T	0.748	0.22
66_Q	337_K	0.746	0.22
236_D	296_D	0.746	0.22
271_I	359_F	0.745	0.22
198_L	346_R	0.745	0.22
224_E	262_D	0.744	0.22
199_G	342_P	0.743	0.22
204_S	318_D	0.743	0.22
18_G	415_L	0.742	0.22
127_N	335_E	0.740	0.22
416_G	434_E	0.739	0.22
80_T	192_F	0.736	0.22
139_S	440_L	0.735	0.22
249_T	252_D	0.734	0.22
253_V	387_L	0.734	0.22
10_L	393_V	0.732	0.22
12_I	340_M	0.730	0.21
99_K	334_V	0.730	0.21
230_E	348_K	0.729	0.21
86_S	256_I	0.728	0.21
416_G	419_E	0.726	0.21
255_S	270_D	0.725	0.21
8_A	38_N	0.723	0.21
196_T	346_R	0.723	0.21
77_W	270_D	0.721	0.21
189_V	438_E	0.720	0.21
287_V	335_E	0.720	0.21
245_S	268_Y	0.720	0.21
63_M	249_T	0.719	0.21
378_I	427_I	0.718	0.21
15_V	107_I	0.718	0.21
38_N	300_R	0.718	0.21
74_I	116_V	0.717	0.21
334_V	384_K	0.713	0.21
57_I	253_V	0.712	0.21
209_E	366_T	0.712	0.21
305_L	309_G	0.712	0.21
156_K	279_V	0.711	0.21
126_K	404_E	0.710	0.21
291_K	373_I	0.710	0.21
18_G	266_V	0.709	0.21
21_G	89_Q	0.709	0.21
340_M	373_I	0.708	0.21
135_L	139_S	0.705	0.21
223_Q	244_K	0.704	0.21
59_T	343_E	0.703	0.20
349_V	400_L	0.703	0.20
225_A	344_A	0.702	0.20
200_P	402_T	0.701	0.20
341_Y	399_A	0.700	0.20
235_D	345_I	0.700	0.20
201_S	273_K	0.700	0.20
128_E	423_F	0.699	0.20
109_D	133_N	0.698	0.20
350_A	355_E	0.697	0.20
87_V	267_I	0.697	0.20
127_N	373_I	0.697	0.20
91_P	305_L	0.696	0.20
344_A	363_D	0.696	0.20
25_H	161_M	0.694	0.20
245_S	253_V	0.694	0.20
335_E	390_N	0.694	0.20
8_A	34_H	0.694	0.20
200_P	360_S	0.689	0.20
145_E	361_A	0.688	0.20
365_L	442_N	0.686	0.20
5_I	172_K	0.685	0.20
202_F	343_E	0.684	0.20
48_Y	110_F	0.681	0.20
326_I	435_E	0.681	0.20
203_T	346_R	0.680	0.20
300_R	303_A	0.680	0.20
230_E	240_I	0.680	0.20
59_T	344_A	0.680	0.20
106_K	424_R	0.680	0.20
93_T	347_M	0.679	0.20
227_Q	361_A	0.679	0.20
251_R	280_Y	0.678	0.20
130_T	134_K	0.678	0.20
241_K	272_T	0.677	0.20
230_E	390_N	0.677	0.20
249_T	426_Y	0.675	0.19
66_Q	120_D	0.674	0.19
24_E	27_E	0.672	0.19
373_I	412_Y	0.671	0.19
236_D	239_S	0.669	0.19
235_D	281_L	0.668	0.19
162_D	179_I	0.667	0.19
11_G	126_K	0.666	0.19
235_D	377_A	0.662	0.19
45_E	86_S	0.661	0.19
292_I	379_T	0.660	0.19
158_L	163_V	0.655	0.19
148_H	359_F	0.653	0.19
133_N	419_E	0.653	0.19
222_E	226_K	0.653	0.19
218_K	289_D	0.652	0.19
174_S	387_L	0.651	0.19
78_R	110_F	0.651	0.19
112_Y	416_G	0.651	0.19
86_S	108_G	0.650	0.19
128_E	132_L	0.649	0.19
168_A	178_I	0.649	0.19
121_Q	360_S	0.649	0.19
326_I	440_L	0.649	0.19
346_R	442_N	0.647	0.19
357_V	398_L	0.646	0.18
103_L	360_S	0.645	0.18
417_T	420_N	0.645	0.18
62_A	416_G	0.644	0.18
196_T	360_S	0.644	0.18
212_F	315_L	0.643	0.18
16_G	27_E	0.642	0.18
80_T	278_P	0.641	0.18
131_S	308_N	0.641	0.18
242_V	272_T	0.641	0.18
15_V	431_D	0.640	0.18
73_L	76_V	0.639	0.18
319_E	402_T	0.635	0.18
318_D	387_L	0.632	0.18
282_I	346_R	0.631	0.18
281_L	309_G	0.631	0.18
234_P	315_L	0.624	0.18
75_D	321_A	0.624	0.18
278_P	295_N	0.624	0.18
110_F	186_E	0.623	0.18
103_L	361_A	0.622	0.18
24_E	162_D	0.621	0.18
74_I	80_T	0.619	0.18
318_D	360_S	0.617	0.18
94_L	178_I	0.615	0.17
343_E	433_S	0.614	0.17
339_R	400_L	0.613	0.17
311_E	431_D	0.613	0.17
12_I	291_K	0.613	0.17
110_F	149_V	0.612	0.17
331_Y	425_M	0.612	0.17
232_F	366_T	0.611	0.17
94_L	163_V	0.610	0.17
112_Y	160_W	0.610	0.17
227_Q	231_R	0.610	0.17
287_V	352_D	0.609	0.17
75_D	366_T	0.609	0.17
153_V	331_Y	0.609	0.17
328_V	367_S	0.609	0.17
108_G	225_A	0.608	0.17
94_L	175_D	0.608	0.17
75_D	339_R	0.608	0.17
372_T	384_K	0.607	0.17
324_D	357_V	0.605	0.17
22_Y	32_L	0.603	0.17
258_M	355_E	0.601	0.17
144_N	232_F	0.601	0.17
45_E	380_E	0.599	0.17
332_V	344_A	0.598	0.17
372_T	385_S	0.598	0.17
239_S	391_V	0.597	0.17
6_L	157_N	0.595	0.17
101_E	119_L	0.594	0.17
131_S	280_Y	0.591	0.17
194_T	331_Y	0.591	0.17
319_E	438_E	0.590	0.17
376_P	398_L	0.588	0.17
44_H	123_P	0.588	0.17
397_R	440_L	0.588	0.17
414_M	434_E	0.587	0.17
54_H	140_E	0.586	0.17
250_N	356_V	0.586	0.17
42_A	117_R	0.585	0.17
281_L	330_S	0.585	0.17
196_T	395_E	0.584	0.16
148_H	356_V	0.583	0.16
98_N	181_S	0.582	0.16
23_K	213_S	0.580	0.16
9_V	377_A	0.580	0.16
71_P	320_S	0.579	0.16
379_T	387_L	0.578	0.16
191_A	404_E	0.577	0.16
187_K	385_S	0.576	0.16
218_K	307_K	0.575	0.16
122_K	287_V	0.575	0.16
243_V	269_M	0.573	0.16
110_F	331_Y	0.571	0.16
386_K	392_Q	0.571	0.16
20_W	388_N	0.570	0.16
45_E	144_N	0.569	0.16
199_G	315_L	0.569	0.16
381_A	431_D	0.567	0.16
258_M	280_Y	0.566	0.16
89_Q	145_E	0.564	0.16
172_K	337_K	0.564	0.16
269_M	374_P	0.564	0.16
346_R	360_S	0.564	0.16
12_I	304_F	0.563	0.16
5_I	134_K	0.563	0.16
82_E	85_N	0.562	0.16
12_I	188_N	0.559	0.16
70_S	88_S	0.557	0.16
24_E	31_V	0.556	0.16
92_L	388_N	0.556	0.16
219_Q	224_E	0.556	0.16
68_S	272_T	0.555	0.16
97_F	180_N	0.555	0.16
258_M	394_R	0.553	0.16
232_F	359_F	0.553	0.16
146_L	358_G	0.552	0.16
15_V	267_I	0.552	0.16
136_Y	414_M	0.552	0.16
13_A	381_A	0.551	0.16
289_D	381_A	0.551	0.16
67_K	120_D	0.550	0.15
319_E	346_R	0.550	0.15
59_T	318_D	0.546	0.15
7_I	317_I	0.546	0.15
129_Y	393_V	0.545	0.15
31_V	162_D	0.545	0.15
310_F	365_L	0.543	0.15
198_L	330_S	0.543	0.15
130_T	293_S	0.542	0.15
282_I	299_N	0.541	0.15
100_T	146_L	0.538	0.15
73_L	160_W	0.537	0.15
15_V	393_V	0.537	0.15
192_F	273_K	0.537	0.15
57_I	212_F	0.536	0.15
310_F	344_A	0.536	0.15
415_L	426_Y	0.534	0.15
395_E	415_L	0.533	0.15
67_K	385_S	0.533	0.15
374_P	391_V	0.532	0.15
319_E	343_E	0.532	0.15
389_K	419_E	0.532	0.15
12_I	431_D	0.531	0.15
338_V	432_G	0.531	0.15
298_S	317_I	0.530	0.15
59_T	199_G	0.529	0.15
91_P	104_L	0.528	0.15
97_F	158_L	0.528	0.15
323_Y	327_G	0.526	0.15
59_T	82_E	0.526	0.15
428_N	434_E	0.526	0.15
22_Y	137_Q	0.525	0.15
122_K	281_L	0.525	0.15
105_S	437_V	0.523	0.15
145_E	325_K	0.523	0.15
261_P	268_Y	0.523	0.15
59_T	202_F	0.522	0.15
301_A	309_G	0.522	0.15
217_G	388_N	0.522	0.15
294_L	429_A	0.521	0.15
384_K	396_T	0.520	0.15
345_I	373_I	0.520	0.15
192_F	279_V	0.519	0.15
292_I	354_G	0.518	0.15
199_G	309_G	0.518	0.15
132_L	388_N	0.518	0.15
288_K	369_R	0.517	0.15
35_A	44_H	0.517	0.15
22_Y	123_P	0.516	0.15
228_I	271_I	0.516	0.15
277_H	322_Q	0.515	0.14
53_L	221_S	0.514	0.14
49_Q	194_T	0.514	0.14
223_Q	364_F	0.514	0.14
326_I	356_V	0.513	0.14
173_Q	314_D	0.513	0.14
104_L	350_A	0.512	0.14
266_V	302_L	0.512	0.14
120_D	386_K	0.512	0.14
12_I	102_E	0.511	0.14
51_D	69_L	0.510	0.14
108_G	245_S	0.510	0.14
289_D	356_V	0.509	0.14
45_E	153_V	0.509	0.14
230_E	237_N	0.508	0.14
36_E	40_Q	0.508	0.14
273_K	314_D	0.507	0.14
88_S	434_E	0.507	0.14
296_D	377_A	0.505	0.14
62_A	407_Q	0.504	0.14
56_K	75_D	0.503	0.14
84_H	328_V	0.502	0.14
370_K	377_A	0.502	0.14
271_I	420_N	0.502	0.14
231_R	239_S	0.502	0.14
426_Y	434_E	0.501	0.14
41_R	94_L	0.501	0.14
212_F	402_T	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4k90B	1	0.3667	99.8	0.861	Contact Map
3nqzA	1	0.3511	99.8	0.87	Contact Map
2o3oA	2	0.4667	97.5	0.947	Contact Map
4exrA	2	0.3	96.2	0.955	Contact Map
4cgkA	3	0.6422	91.9	0.964	Contact Map
2gu3A	1	0.2689	72.4	0.972	Contact Map
3zg1A	2	0.2244	65.8	0.973	Contact Map
2fgtA	1	0.7578	55	0.975	Contact Map
4ipbA	1	0.2933	44.7	0.976	Contact Map
3db7A	2	0.2756	20.8	0.98	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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