YQXK - BACSU - GREMLIN Contacts

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YQXK - Uncharacterized protein YqxK

UniProt:	P38423	Sequences: MKKIYADLHIHIGRTFTGRAVKITGAKTLTLDRILVEASEHKGIELLGIIDCHSPEVILELEEGISSGKYRELDGGGIRYRSTTLLLGSELEIYDEACSGPIHVLVFMPTLADMKQFSNWLSARLKNIHLSSQRIYETGLNLQKKVQDMGGLFIPAHIFTPHKSLYGKGVKSSLTEVFDPSMIDAVELGLSCDTDMASHVSQLNPYPFLTNSDAHSLGKIGREYNELYVQSADFTEFALALKGQDDRKIIANYGLDPLLGKYYQTACEACGEPAVSGETACANCGKARFTKGVSDRLRELSDQLEVRVPRPRYVHQIPLQFVPGVGPKTLDKLKKAFGTEMAVLHEAAEEDLARVVPPKTAALIVKARSGKLELKAGGGGTYGKIKP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	387 (367)
Sequences:	487 (370)
Seq/√Len:	19.3

BACSU - YQXK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
62_E	115_K	7.134	1.00
201_S	302_D	5.385	1.00
158_I	186_V	5.338	1.00
154_I	209_L	4.529	1.00
207_P	249_I	4.418	1.00
108_M	117_F	4.119	1.00
110_T	113_D	4.016	1.00
236_E	247_R	3.992	1.00
44_I	221_G	3.905	1.00
198_S	204_N	3.392	1.00
58_I	118_S	3.350	1.00
8_L	237_F	3.297	1.00
342_A	346_E	2.989	0.99
173_S	176_E	2.953	0.99
46_L	237_F	2.936	0.99
204_N	303_Q	2.896	0.99
104_V	178_F	2.888	0.99
86_L	237_F	2.864	0.99
32_D	64_G	2.851	0.99
108_M	151_G	2.822	0.99
291_K	299_E	2.612	0.98
342_A	347_A	2.591	0.98
70_Y	78_I	2.567	0.97
6_A	227_L	2.484	0.97
223_E	254_G	2.458	0.97
211_N	225_N	2.388	0.96
306_V	309_P	2.319	0.95
76_G	79_R	2.285	0.95
201_S	303_Q	2.236	0.94
343_V	347_A	2.231	0.94
102_I	169_G	2.212	0.94
30_T	33_R	2.207	0.94
199_H	298_R	2.197	0.94
31_L	61_L	2.087	0.92
140_L	179_D	2.081	0.92
61_L	111_L	2.080	0.92
274_A	291_K	2.047	0.91
58_I	115_K	1.970	0.89
86_L	107_F	1.931	0.88
93_I	178_F	1.917	0.88
196_M	263_Y	1.895	0.87
366_K	371_K	1.871	0.87
108_M	114_M	1.847	0.86
337_F	347_A	1.846	0.86
79_R	84_T	1.813	0.85
255_L	259_L	1.805	0.85
326_G	329_T	1.774	0.84
102_I	139_G	1.771	0.83
4_I	229_V	1.763	0.83
104_V	139_G	1.725	0.82
117_F	151_G	1.722	0.82
323_P	327_P	1.681	0.80
93_I	135_I	1.670	0.80
153_F	184_D	1.647	0.79
207_P	243_G	1.644	0.78
31_L	85_L	1.634	0.78
234_F	238_A	1.632	0.78
4_I	237_F	1.609	0.77
198_S	308_V	1.609	0.77
330_L	334_K	1.574	0.75
5_Y	341_M	1.562	0.75
192_C	209_L	1.517	0.73
255_L	367_A	1.514	0.72
110_T	317_I	1.506	0.72
323_P	326_G	1.485	0.71
255_L	321_F	1.483	0.71
13_G	30_T	1.463	0.70
13_G	60_E	1.455	0.69
199_H	301_S	1.454	0.69
76_G	80_Y	1.452	0.69
334_K	339_T	1.443	0.69
238_A	242_K	1.436	0.68
102_I	168_K	1.431	0.68
365_V	369_S	1.428	0.68
239_L	246_D	1.372	0.65
122_S	129_H	1.347	0.63
274_A	279_T	1.345	0.63
350_E	354_R	1.337	0.63
147_Q	184_D	1.330	0.62
337_F	352_L	1.315	0.61
339_T	342_A	1.313	0.61
329_T	332_K	1.313	0.61
58_I	111_L	1.306	0.61
33_R	83_T	1.294	0.60
58_I	62_E	1.282	0.59
70_Y	111_L	1.276	0.59
162_H	221_G	1.264	0.58
322_V	382_Y	1.263	0.58
352_L	364_I	1.263	0.58
125_L	145_K	1.262	0.58
62_E	371_K	1.257	0.58
337_F	342_A	1.254	0.57
352_L	361_A	1.253	0.57
125_L	128_I	1.246	0.57
46_L	229_V	1.240	0.57
194_T	315_H	1.227	0.56
325_V	329_T	1.226	0.56
137_E	255_L	1.224	0.56
263_Y	282_A	1.221	0.55
105_L	155_P	1.207	0.54
315_H	330_L	1.198	0.54
91_L	125_L	1.196	0.54
199_H	306_V	1.194	0.54
118_S	128_I	1.193	0.54
353_A	361_A	1.190	0.53
89_S	178_F	1.189	0.53
91_L	121_L	1.178	0.53
6_A	46_L	1.172	0.52
97_A	179_D	1.169	0.52
37_E	41_H	1.166	0.52
274_A	289_F	1.157	0.51
313_Y	378_G	1.156	0.51
259_L	321_F	1.155	0.51
73_L	79_R	1.154	0.51
41_H	334_K	1.154	0.51
192_C	197_A	1.149	0.51
60_E	64_G	1.146	0.51
31_L	60_E	1.143	0.50
67_S	235_T	1.141	0.50
357_P	361_A	1.137	0.50
7_D	11_H	1.137	0.50
25_G	218_G	1.135	0.50
97_A	176_E	1.127	0.49
218_G	317_I	1.126	0.49
166_Y	173_S	1.126	0.49
146_V	153_F	1.119	0.49
162_H	168_K	1.114	0.49
331_D	370_G	1.107	0.48
88_G	107_F	1.104	0.48
39_S	83_T	1.102	0.48
335_K	351_D	1.101	0.48
4_I	46_L	1.098	0.48
32_D	174_L	1.098	0.48
256_D	259_L	1.096	0.47
158_I	206_Y	1.092	0.47
311_P	337_F	1.089	0.47
146_V	151_G	1.088	0.47
324_G	327_P	1.083	0.47
353_A	358_P	1.080	0.46
104_V	153_F	1.079	0.46
166_Y	202_Q	1.075	0.46
61_L	268_E	1.075	0.46
47_L	308_V	1.074	0.46
134_R	143_Q	1.074	0.46
361_A	371_K	1.073	0.46
334_K	340_E	1.073	0.46
144_K	180_P	1.072	0.46
238_A	322_V	1.070	0.46
117_F	295_D	1.070	0.46
224_Y	341_M	1.067	0.46
188_L	194_T	1.059	0.45
223_E	255_L	1.057	0.45
263_Y	303_Q	1.057	0.45
119_N	352_L	1.054	0.45
45_E	352_L	1.049	0.44
50_I	134_R	1.048	0.44
114_M	151_G	1.046	0.44
86_L	111_L	1.039	0.44
6_A	237_F	1.038	0.44
166_Y	178_F	1.030	0.43
186_V	200_V	1.028	0.43
61_L	87_L	1.025	0.43
174_L	206_Y	1.025	0.43
314_V	345_H	1.024	0.43
360_T	367_A	1.024	0.43
48_G	61_L	1.021	0.43
366_K	385_I	1.021	0.43
166_Y	200_V	1.020	0.43
166_Y	174_L	1.018	0.43
83_T	221_G	1.012	0.42
107_F	297_L	1.011	0.42
106_V	146_V	1.007	0.42
335_K	348_A	1.003	0.42
91_L	135_I	0.997	0.41
126_K	265_T	0.993	0.41
373_E	386_K	0.991	0.41
200_V	243_G	0.990	0.41
66_S	84_T	0.990	0.41
354_R	371_K	0.989	0.41
145_K	192_C	0.984	0.40
299_E	337_F	0.982	0.40
71_R	106_V	0.981	0.40
263_Y	294_S	0.976	0.40
200_V	325_V	0.975	0.40
101_P	169_G	0.971	0.40
144_K	148_D	0.969	0.39
323_P	329_T	0.960	0.39
206_Y	299_E	0.959	0.39
61_L	301_S	0.958	0.39
135_I	300_L	0.957	0.39
236_E	246_D	0.956	0.39
375_K	386_K	0.956	0.39
8_L	209_L	0.952	0.38
47_L	230_Q	0.952	0.38
47_L	140_L	0.949	0.38
145_K	149_M	0.949	0.38
207_P	246_D	0.947	0.38
5_Y	346_E	0.942	0.38
78_I	210_T	0.939	0.38
269_A	343_V	0.938	0.38
130_L	133_Q	0.938	0.38
227_L	237_F	0.937	0.38
62_E	301_S	0.936	0.38
233_D	236_E	0.931	0.37
64_G	106_V	0.930	0.37
134_R	210_T	0.929	0.37
141_N	146_V	0.928	0.37
48_G	88_G	0.926	0.37
58_I	226_E	0.926	0.37
321_F	385_I	0.926	0.37
58_I	87_L	0.925	0.37
80_Y	220_I	0.922	0.37
41_H	331_D	0.922	0.37
225_N	249_I	0.916	0.36
268_E	290_T	0.913	0.36
184_D	249_I	0.903	0.36
188_L	254_G	0.903	0.36
152_L	209_L	0.900	0.35
45_E	242_K	0.899	0.35
94_Y	169_G	0.894	0.35
25_G	53_H	0.891	0.35
188_L	208_F	0.890	0.35
159_F	252_N	0.889	0.35
117_F	168_K	0.888	0.35
174_L	370_G	0.885	0.35
309_P	369_S	0.882	0.34
322_V	327_P	0.882	0.34
362_A	365_V	0.876	0.34
276_S	334_K	0.865	0.33
19_R	366_K	0.865	0.33
186_V	210_T	0.864	0.33
87_L	114_M	0.862	0.33
54_S	131_S	0.861	0.33
46_L	179_D	0.860	0.33
140_L	180_P	0.858	0.33
6_A	146_V	0.857	0.33
159_F	197_A	0.853	0.33
92_E	252_N	0.852	0.33
70_Y	87_L	0.851	0.33
107_F	156_A	0.850	0.33
83_T	210_T	0.850	0.33
53_H	91_L	0.848	0.32
154_I	385_I	0.848	0.32
135_I	158_I	0.846	0.32
291_K	341_M	0.844	0.32
202_Q	345_H	0.839	0.32
243_G	248_K	0.839	0.32
252_N	267_C	0.838	0.32
60_E	123_A	0.837	0.32
290_T	295_D	0.831	0.31
166_Y	341_M	0.831	0.31
118_S	122_S	0.830	0.31
310_R	382_Y	0.830	0.31
52_C	128_I	0.829	0.31
4_I	69_K	0.825	0.31
132_S	178_F	0.819	0.31
341_M	345_H	0.817	0.31
108_M	113_D	0.817	0.31
201_S	204_N	0.811	0.30
272_E	276_S	0.811	0.30
347_A	350_E	0.808	0.30
249_I	311_P	0.808	0.30
114_M	118_S	0.805	0.30
83_T	301_S	0.805	0.30
100_G	164_S	0.800	0.30
95_D	169_G	0.794	0.29
12_I	18_G	0.793	0.29
221_G	341_M	0.792	0.29
67_S	269_A	0.789	0.29
327_P	363_L	0.788	0.29
48_G	86_L	0.788	0.29
350_E	353_A	0.783	0.29
47_L	329_T	0.781	0.29
240_A	385_I	0.779	0.29
127_N	135_I	0.779	0.29
89_S	225_N	0.777	0.29
321_F	367_A	0.777	0.29
327_P	331_D	0.776	0.29
29_L	33_R	0.774	0.28
94_Y	171_K	0.773	0.28
198_S	310_R	0.772	0.28
105_L	156_A	0.771	0.28
126_K	136_Y	0.771	0.28
194_T	249_I	0.769	0.28
92_E	159_F	0.765	0.28
49_I	91_L	0.764	0.28
361_A	364_I	0.762	0.28
267_C	379_G	0.761	0.28
325_V	385_I	0.760	0.28
254_G	378_G	0.760	0.28
94_Y	266_A	0.759	0.28
151_G	326_G	0.758	0.28
118_S	154_I	0.757	0.28
109_P	301_S	0.753	0.27
70_Y	352_L	0.751	0.27
351_D	354_R	0.750	0.27
210_T	291_K	0.750	0.27
162_H	184_D	0.749	0.27
271_G	381_T	0.749	0.27
95_D	101_P	0.748	0.27
59_L	116_Q	0.748	0.27
231_S	346_E	0.745	0.27
29_L	183_I	0.742	0.27
30_T	76_G	0.741	0.27
44_I	364_I	0.740	0.27
188_L	252_N	0.739	0.27
57_V	136_Y	0.739	0.27
64_G	70_Y	0.736	0.26
241_L	333_L	0.735	0.26
61_L	85_L	0.734	0.26
226_E	314_V	0.734	0.26
159_F	254_G	0.729	0.26
130_L	151_G	0.725	0.26
107_F	154_I	0.724	0.26
26_A	273_P	0.724	0.26
31_L	199_H	0.722	0.26
302_D	305_E	0.720	0.26
79_R	82_S	0.720	0.26
107_F	326_G	0.718	0.26
164_S	298_R	0.715	0.25
243_G	249_I	0.714	0.25
107_F	184_D	0.712	0.25
95_D	300_L	0.712	0.25
91_L	106_V	0.711	0.25
205_P	336_A	0.710	0.25
181_S	205_P	0.709	0.25
349_E	365_V	0.708	0.25
27_K	381_T	0.708	0.25
251_A	314_V	0.708	0.25
282_A	289_F	0.707	0.25
108_M	162_H	0.707	0.25
236_E	359_K	0.706	0.25
252_N	379_G	0.703	0.25
128_I	297_L	0.702	0.25
92_E	254_G	0.702	0.25
50_I	133_Q	0.701	0.25
252_N	378_G	0.698	0.25
93_I	177_V	0.694	0.24
140_L	279_T	0.694	0.24
76_G	326_G	0.693	0.24
378_G	381_T	0.691	0.24
162_H	288_R	0.691	0.24
54_S	61_L	0.690	0.24
72_E	112_A	0.689	0.24
107_F	155_P	0.688	0.24
66_S	250_I	0.688	0.24
199_H	309_P	0.688	0.24
27_K	81_R	0.688	0.24
120_W	236_E	0.685	0.24
106_V	297_L	0.682	0.24
272_E	298_R	0.681	0.24
166_Y	186_V	0.680	0.24
95_D	138_T	0.679	0.24
200_V	336_A	0.677	0.24
44_I	193_D	0.677	0.24
77_G	80_Y	0.676	0.24
163_K	224_Y	0.674	0.24
280_A	283_N	0.673	0.23
362_A	366_K	0.673	0.23
87_L	351_D	0.672	0.23
30_T	105_L	0.672	0.23
152_L	184_D	0.671	0.23
58_I	78_I	0.671	0.23
254_G	267_C	0.670	0.23
195_D	337_F	0.667	0.23
174_L	180_P	0.665	0.23
272_E	304_L	0.664	0.23
168_K	206_Y	0.664	0.23
93_I	104_V	0.663	0.23
25_G	131_S	0.662	0.23
159_F	267_C	0.662	0.23
120_W	143_Q	0.657	0.23
137_E	300_L	0.655	0.23
280_A	382_Y	0.650	0.22
10_I	186_V	0.648	0.22
195_D	355_V	0.647	0.22
39_S	186_V	0.647	0.22
26_A	376_A	0.647	0.22
266_A	290_T	0.647	0.22
289_F	336_A	0.646	0.22
5_Y	375_K	0.645	0.22
167_G	196_M	0.641	0.22
49_I	93_I	0.641	0.22
53_H	101_P	0.640	0.22
92_E	267_C	0.640	0.22
174_L	186_V	0.638	0.22
151_G	313_Y	0.635	0.22
347_A	351_D	0.633	0.22
101_P	147_Q	0.632	0.22
106_V	117_F	0.631	0.22
328_K	333_L	0.629	0.22
132_S	138_T	0.628	0.21
273_P	276_S	0.628	0.21
333_L	347_A	0.626	0.21
195_D	346_E	0.626	0.21
74_D	348_A	0.626	0.21
50_I	217_L	0.626	0.21
32_D	36_V	0.623	0.21
88_G	317_I	0.623	0.21
58_I	70_Y	0.620	0.21
316_Q	345_H	0.620	0.21
75_G	172_S	0.618	0.21
164_S	176_E	0.618	0.21
168_K	280_A	0.615	0.21
353_A	362_A	0.614	0.21
200_V	279_T	0.612	0.21
139_G	178_F	0.610	0.21
229_V	236_E	0.608	0.21
10_I	166_Y	0.605	0.21
200_V	376_A	0.605	0.21
173_S	322_V	0.604	0.20
113_D	146_V	0.603	0.20
5_Y	44_I	0.603	0.20
110_T	304_L	0.603	0.20
46_L	234_F	0.602	0.20
86_L	221_G	0.600	0.20
208_F	310_R	0.600	0.20
29_L	217_L	0.599	0.20
56_E	255_L	0.597	0.20
158_I	164_S	0.597	0.20
48_G	246_D	0.595	0.20
91_L	256_D	0.595	0.20
202_Q	310_R	0.595	0.20
225_N	370_G	0.595	0.20
207_P	248_K	0.593	0.20
101_P	134_R	0.593	0.20
197_A	252_N	0.593	0.20
81_R	327_P	0.591	0.20
4_I	86_L	0.590	0.20
50_I	210_T	0.589	0.20
123_A	358_P	0.586	0.20
168_K	221_G	0.585	0.20
339_T	349_E	0.584	0.20
185_A	209_L	0.584	0.20
98_C	169_G	0.584	0.20
141_N	144_K	0.583	0.20
159_F	188_L	0.581	0.20
18_G	162_H	0.581	0.20
37_E	166_Y	0.580	0.19
115_K	144_K	0.579	0.19
28_T	32_D	0.579	0.19
19_R	290_T	0.579	0.19
57_V	133_Q	0.578	0.19
92_E	197_A	0.578	0.19
132_S	177_V	0.578	0.19
106_V	122_S	0.577	0.19
13_G	382_Y	0.576	0.19
253_Y	316_Q	0.576	0.19
12_I	134_R	0.574	0.19
337_F	355_V	0.573	0.19
60_E	334_K	0.572	0.19
102_I	171_K	0.572	0.19
174_L	308_V	0.571	0.19
181_S	354_R	0.570	0.19
286_K	385_I	0.569	0.19
194_T	252_N	0.568	0.19
101_P	300_L	0.566	0.19
207_P	312_R	0.565	0.19
198_S	373_E	0.565	0.19
184_D	207_P	0.564	0.19
66_S	232_A	0.564	0.19
79_R	360_T	0.562	0.19
248_K	386_K	0.561	0.19
195_D	332_K	0.558	0.19
351_D	364_I	0.557	0.19
63_E	140_L	0.556	0.19
154_I	233_D	0.556	0.19
14_R	25_G	0.555	0.19
349_E	369_S	0.555	0.19
87_L	385_I	0.554	0.18
37_E	258_L	0.553	0.18
319_L	368_R	0.553	0.18
263_Y	289_F	0.551	0.18
92_E	188_L	0.551	0.18
88_G	221_G	0.551	0.18
40_E	79_R	0.550	0.18
4_I	355_V	0.549	0.18
112_A	115_K	0.548	0.18
52_C	234_F	0.548	0.18
20_A	129_H	0.548	0.18
119_N	346_E	0.547	0.18
65_I	172_S	0.546	0.18
46_L	113_D	0.546	0.18
184_D	242_K	0.545	0.18
50_I	143_Q	0.545	0.18
46_L	238_A	0.545	0.18
5_Y	224_Y	0.544	0.18
169_G	266_A	0.544	0.18
246_D	249_I	0.543	0.18
218_G	340_E	0.542	0.18
264_Q	376_A	0.541	0.18
159_F	379_G	0.539	0.18
111_L	320_Q	0.538	0.18
201_S	304_L	0.538	0.18
331_D	335_K	0.537	0.18
92_E	378_G	0.536	0.18
75_G	148_D	0.536	0.18
275_V	350_E	0.536	0.18
47_L	219_K	0.535	0.18
54_S	268_E	0.535	0.18
123_A	165_L	0.534	0.18
145_K	312_R	0.533	0.18
12_I	132_S	0.532	0.18
239_L	331_D	0.532	0.18
336_A	351_D	0.532	0.18
138_T	141_N	0.532	0.18
188_L	267_C	0.531	0.18
46_L	376_A	0.531	0.18
163_K	267_C	0.531	0.18
77_G	83_T	0.530	0.18
269_A	280_A	0.529	0.18
44_I	83_T	0.527	0.17
138_T	177_V	0.526	0.17
174_L	371_K	0.524	0.17
70_Y	106_V	0.524	0.17
108_M	347_A	0.523	0.17
74_D	328_K	0.523	0.17
44_I	341_M	0.522	0.17
80_Y	382_Y	0.522	0.17
121_L	238_A	0.522	0.17
154_I	178_F	0.521	0.17
231_S	343_V	0.521	0.17
62_E	354_R	0.520	0.17
174_L	336_A	0.520	0.17
29_L	77_G	0.520	0.17
361_A	369_S	0.517	0.17
111_L	317_I	0.514	0.17
304_L	336_A	0.514	0.17
270_C	281_C	0.513	0.17
63_E	349_E	0.512	0.17
53_H	135_I	0.512	0.17
44_I	369_S	0.511	0.17
283_N	372_L	0.510	0.17
159_F	378_G	0.509	0.17
53_H	136_Y	0.509	0.17
25_G	133_Q	0.508	0.17
92_E	265_T	0.508	0.17
263_Y	306_V	0.508	0.17
57_V	131_S	0.507	0.17
70_Y	232_A	0.507	0.17
20_A	135_I	0.506	0.17
254_G	379_G	0.506	0.17
183_I	343_V	0.505	0.17
219_K	273_P	0.505	0.17
310_R	313_Y	0.505	0.17
343_V	382_Y	0.505	0.17
254_G	310_R	0.504	0.17
194_T	208_F	0.504	0.17
140_L	237_F	0.501	0.17
45_E	299_E	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2anuA	5	0.5271	99.9	0.869	Contact Map
3e38A	4	0.7829	99.8	0.883	Contact Map
3o0fA	1	0.553	99.8	0.885	Contact Map
2yb1A	1	0.5607	99.7	0.892	Contact Map
2w9mA	1	0.5581	99.7	0.898	Contact Map
2hnhA	1	0.8243	99.6	0.904	Contact Map
4gx8A	1	0.6537	99.6	0.904	Contact Map
4gc3A	1	0.5607	99.5	0.908	Contact Map
2wjeA	1	0.553	99.3	0.917	Contact Map
3b0xA	1	0.5581	99.2	0.921	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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