ROCR - BACSU - GREMLIN Contacts

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ROCR - Arginine utilization regulatory protein RocR

UniProt:	P38022	Sequences: MVKDSEFLTLVFQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQALQEGKTIKNVKQSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMNKKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRSGGPFISQNCAALPDSLVESILFGTKKGAFTGAVDQPGLFEQAHGGTLLLDEINSLNLSLQAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLIIPPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAMNFMTDEQTITASHLPYQYRMKIKPADIPEPETPRHQPAADLKEKMESFEKYVIENVLRKHGHNISKAAQELGISRQSLQYRLKKFSHSSNE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	461 (395)
Sequences:	11149 (8827)
Seq/√Len:	444.1

ECOLI - DHAR HYFR YGEV RTCR TYRR FHLA NTRC GLRR ATOC NORR PRPR ZRAR
BACSU - ROCR YQIR ACOR

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
430_H	440_E	4.270	1.00
289_A	294_R	3.989	1.00
172_E	314_R	3.242	1.00
229_L	264_R	3.158	1.00
205_D	249_S	3.103	1.00
330_K	363_E	2.980	1.00
288_D	292_G	2.963	1.00
216_K	225_D	2.900	1.00
284_E	289_A	2.823	1.00
262_K	271_D	2.818	1.00
262_K	273_P	2.719	1.00
231_E	265_R	2.714	1.00
420_K	424_E	2.651	1.00
263_I	274_I	2.579	1.00
201_A	252_A	2.553	1.00
264_R	271_D	2.516	1.00
239_L	281_T	2.499	1.00
159_R	375_D	2.495	1.00
430_H	437_A	2.487	1.00
157_A	180_F	2.463	1.00
216_K	268_S	2.378	1.00
429_K	440_E	2.348	1.00
230_F	257_A	2.299	1.00
285_D	288_D	2.196	1.00
343_S	380_T	2.191	1.00
419_E	451_R	2.190	1.00
235_G	275_D	2.137	1.00
436_K	439_Q	2.134	1.00
355_W	365_M	2.124	1.00
321_L	351_L	2.088	1.00
321_L	347_K	2.075	1.00
422_V	426_V	2.069	1.00
217_K	225_D	2.057	1.00
353_Y	356_P	1.982	1.00
324_A	366_I	1.973	1.00
190_R	275_D	1.950	1.00
288_D	291_A	1.935	1.00
146_T	322_L	1.917	1.00
147_S	318_E	1.908	1.00
341_H	378_T	1.869	1.00
69_L	76_G	1.863	1.00
324_A	342_I	1.856	1.00
289_A	292_G	1.843	1.00
180_F	310_I	1.830	1.00
230_F	238_L	1.806	1.00
158_K	187_G	1.802	1.00
259_Q	363_E	1.799	1.00
245_S	284_E	1.784	1.00
416_E	454_K	1.780	1.00
217_K	224_V	1.774	1.00
268_S	272_T	1.755	1.00
178_E	256_R	1.749	1.00
170_A	309_I	1.745	1.00
426_V	430_H	1.743	1.00
345_D	381_A	1.736	1.00
342_I	366_I	1.732	1.00
170_A	307_T	1.716	1.00
353_Y	361_E	1.705	1.00
165_S	367_E	1.690	1.00
426_V	437_A	1.670	1.00
446_Q	450_Y	1.653	1.00
145_G	150_I	1.636	1.00
68_T	71_Q	1.621	1.00
325_S	347_K	1.620	1.00
231_E	272_T	1.614	1.00
346_V	381_A	1.604	1.00
317_K	321_L	1.590	1.00
209_E	253_K	1.584	1.00
153_V	308_L	1.584	1.00
427_L	437_A	1.570	1.00
349_F	381_A	1.570	1.00
205_D	247_N	1.564	1.00
346_V	350_F	1.563	1.00
208_V	250_L	1.555	1.00
435_S	445_R	1.548	1.00
193_G	235_G	1.542	1.00
326_E	330_K	1.534	1.00
346_V	379_I	1.530	1.00
380_T	383_H	1.525	1.00
258_L	278_I	1.519	1.00
286_P	295_M	1.502	1.00
415_M	418_F	1.498	1.00
287_I	291_A	1.498	1.00
317_K	320_I	1.489	1.00
436_K	440_E	1.485	1.00
227_P	231_E	1.478	1.00
348_Q	352_S	1.477	1.00
414_K	418_F	1.471	1.00
317_K	354_D	1.468	1.00
153_V	180_F	1.468	1.00
418_F	422_V	1.459	1.00
343_S	346_V	1.455	1.00
175_T	310_I	1.453	1.00
145_G	154_I	1.440	1.00
215_T	220_F	1.424	1.00
444_S	447_S	1.424	1.00
424_E	428_R	1.422	1.00
343_S	378_T	1.418	1.00
425_N	429_K	1.414	1.00
57_D	61_F	1.394	1.00
234_H	275_D	1.392	1.00
164_S	190_R	1.386	1.00
216_K	265_R	1.373	1.00
144_L	326_E	1.371	1.00
257_A	263_I	1.365	1.00
435_S	439_Q	1.359	1.00
234_H	274_I	1.354	1.00
334_L	367_E	1.352	1.00
160_A	306_V	1.351	1.00
280_A	303_L	1.344	1.00
164_S	334_L	1.341	1.00
433_N	436_K	1.339	1.00
434_I	449_Q	1.332	1.00
327_F	363_E	1.332	1.00
410_D	413_E	1.330	1.00
446_Q	449_Q	1.328	1.00
195_F	236_G	1.323	1.00
152_D	155_E	1.321	1.00
265_R	268_S	1.318	1.00
226_Q	269_T	1.310	1.00
143_I	150_I	1.303	1.00
426_V	441_L	1.301	1.00
149_A	315_E	1.291	1.00
69_L	72_A	1.288	1.00
244_N	282_M	1.285	1.00
142_S	186_N	1.283	1.00
140_F	183_S	1.283	1.00
263_I	273_P	1.270	1.00
331_N	370_M	1.270	1.00
321_L	324_A	1.257	1.00
328_I	370_M	1.251	1.00
340_E	377_Q	1.248	1.00
167_V	184_I	1.246	1.00
182_Q	197_S	1.246	1.00
423_I	448_L	1.237	1.00
157_A	308_L	1.234	1.00
234_H	276_V	1.233	1.00
309_I	315_E	1.229	1.00
165_S	335_F	1.224	1.00
332_N	338_N	1.221	1.00
162_R	189_D	1.220	1.00
379_I	384_L	1.218	1.00
88_N	91_G	1.211	1.00
121_K	125_L	1.209	1.00
118_D	122_L	1.205	1.00
155_E	158_K	1.205	1.00
131_N	134_G	1.203	1.00
170_A	287_I	1.193	1.00
374_T	383_H	1.189	1.00
291_A	297_K	1.186	1.00
143_I	180_F	1.179	1.00
208_V	212_L	1.168	1.00
323_L	327_F	1.164	1.00
450_Y	454_K	1.159	1.00
231_E	263_I	1.158	1.00
347_K	351_L	1.158	1.00
201_A	245_S	1.153	1.00
183_S	187_G	1.146	1.00
150_I	154_I	1.145	1.00
150_I	153_V	1.143	1.00
128_E	133_K	1.143	1.00
129_N	132_K	1.141	1.00
421_Y	425_N	1.131	1.00
118_D	125_L	1.127	1.00
332_N	340_E	1.125	1.00
148_P	152_D	1.120	1.00
287_I	387_Q	1.119	1.00
328_I	342_I	1.118	1.00
426_V	440_E	1.112	1.00
331_N	366_I	1.111	1.00
164_S	189_D	1.109	1.00
265_R	272_T	1.103	1.00
369_A	379_I	1.101	1.00
411_L	415_M	1.101	1.00
232_Q	269_T	1.100	1.00
444_S	450_Y	1.097	1.00
434_I	445_R	1.095	1.00
230_F	276_V	1.094	1.00
348_Q	351_L	1.093	1.00
182_Q	186_N	1.091	1.00
317_K	351_L	1.089	1.00
114_E	118_D	1.084	1.00
123_E	126_I	1.081	1.00
211_I	226_Q	1.081	1.00
126_I	129_N	1.080	1.00
414_K	422_V	1.075	1.00
421_Y	424_E	1.073	1.00
385_P	388_Y	1.069	1.00
71_Q	75_E	1.069	1.00
244_N	286_P	1.068	1.00
445_R	449_Q	1.064	1.00
411_L	414_K	1.059	1.00
327_F	331_N	1.057	1.00
227_P	269_T	1.056	1.00
443_I	448_L	1.054	1.00
320_I	324_A	1.051	1.00
304_S	307_T	1.045	1.00
165_S	305_V	1.043	1.00
430_H	436_K	1.042	1.00
318_E	351_L	1.039	1.00
261_R	273_P	1.038	1.00
345_D	380_T	1.036	1.00
433_N	445_R	1.035	1.00
410_D	442_G	1.035	1.00
332_N	339_V	1.027	1.00
156_N	373_M	1.020	1.00
447_S	451_R	1.019	1.00
143_I	179_L	1.018	1.00
169_L	181_A	1.018	1.00
153_V	157_A	1.011	1.00
149_A	152_D	1.010	1.00
74_Q	103_I	1.009	1.00
122_L	125_L	1.008	1.00
172_E	312_P	1.008	1.00
72_A	76_G	1.006	1.00
449_Q	453_K	1.005	1.00
325_S	329_Q	1.005	1.00
154_I	157_A	1.004	1.00
157_A	183_S	1.004	1.00
146_T	151_Q	1.001	1.00
197_S	256_R	0.998	1.00
229_L	232_Q	0.989	1.00
104_V	109_I	0.973	1.00
172_E	175_T	0.969	1.00
210_S	215_T	0.966	1.00
342_I	347_K	0.965	1.00
169_L	180_F	0.964	1.00
230_F	274_I	0.964	1.00
365_M	369_A	0.964	1.00
178_E	197_S	0.963	1.00
448_L	452_L	0.963	1.00
122_L	126_I	0.961	1.00
368_G	373_M	0.960	1.00
109_I	112_A	0.959	1.00
168_L	280_A	0.956	1.00
434_I	448_L	0.954	1.00
342_I	379_I	0.948	1.00
423_I	451_R	0.947	1.00
424_E	457_H	0.946	1.00
129_N	133_K	0.945	1.00
151_Q	155_E	0.938	1.00
145_G	322_L	0.937	1.00
329_Q	333_H	0.936	1.00
127_R	131_N	0.936	1.00
428_R	432_H	0.935	1.00
123_E	127_R	0.934	1.00
342_I	346_V	0.928	1.00
227_P	232_Q	0.925	1.00
427_L	434_I	0.924	1.00
425_N	428_R	0.922	1.00
284_E	294_R	0.919	1.00
108_K	111_G	0.919	1.00
434_I	452_L	0.918	1.00
128_E	132_K	0.916	1.00
53_K	57_D	0.915	1.00
327_F	366_I	0.913	1.00
153_V	310_I	0.908	1.00
246_L	250_L	0.905	1.00
151_Q	154_I	0.902	1.00
126_I	130_M	0.902	1.00
344_D	348_Q	0.900	1.00
238_L	278_I	0.899	1.00
443_I	447_S	0.898	1.00
57_D	60_M	0.890	1.00
152_D	156_N	0.889	1.00
415_M	422_V	0.887	1.00
115_I	118_D	0.884	1.00
256_R	260_E	0.879	1.00
244_N	283_N	0.877	1.00
125_L	129_N	0.874	1.00
332_N	370_M	0.873	1.00
196_I	233_A	0.870	1.00
169_L	279_I	0.861	1.00
69_L	80_K	0.860	1.00
57_D	62_S	0.860	1.00
75_E	78_T	0.860	1.00
154_I	180_F	0.859	1.00
165_S	306_V	0.855	1.00
116_A	121_K	0.853	1.00
361_E	387_Q	0.853	1.00
447_S	450_Y	0.851	1.00
305_V	364_H	0.850	1.00
181_A	195_F	0.849	1.00
144_L	322_L	0.849	1.00
215_T	226_Q	0.847	1.00
245_S	283_N	0.846	1.00
165_S	372_F	0.846	1.00
118_D	121_K	0.846	1.00
417_S	421_Y	0.844	1.00
80_K	83_K	0.844	1.00
385_P	389_R	0.842	1.00
238_L	257_A	0.840	1.00
69_L	78_T	0.836	1.00
108_K	112_A	0.830	1.00
56_M	61_F	0.828	1.00
317_K	352_S	0.828	1.00
140_F	157_A	0.827	1.00
143_I	154_I	0.827	1.00
451_R	455_F	0.824	1.00
96_T	108_K	0.823	1.00
427_L	452_L	0.823	1.00
154_I	158_K	0.823	1.00
321_L	325_S	0.822	1.00
220_F	223_A	0.822	1.00
232_Q	268_S	0.820	1.00
437_A	440_E	0.817	1.00
166_S	261_R	0.815	1.00
215_T	224_V	0.813	1.00
157_A	184_I	0.812	1.00
420_K	455_F	0.806	1.00
148_P	151_Q	0.806	1.00
278_I	303_L	0.804	1.00
234_H	272_T	0.802	1.00
335_F	370_M	0.802	1.00
414_K	417_S	0.802	1.00
71_Q	74_Q	0.797	1.00
67_S	71_Q	0.795	1.00
196_I	232_Q	0.794	1.00
199_N	245_S	0.793	1.00
369_A	374_T	0.793	1.00
331_N	363_E	0.793	1.00
215_T	219_A	0.792	1.00
434_I	446_Q	0.791	1.00
331_N	335_F	0.791	1.00
332_N	337_M	0.791	1.00
422_V	441_L	0.789	1.00
331_N	367_E	0.788	1.00
75_E	79_I	0.786	1.00
128_E	131_N	0.784	1.00
99_H	103_I	0.782	1.00
89_N	92_Q	0.782	1.00
163_T	372_F	0.782	1.00
130_M	133_K	0.781	1.00
60_M	63_K	0.780	1.00
313_L	362_L	0.778	1.00
330_K	334_L	0.775	1.00
116_A	125_L	0.774	1.00
157_A	187_G	0.773	1.00
363_E	367_E	0.770	1.00
337_M	370_M	0.770	1.00
169_L	310_I	0.767	1.00
325_S	341_H	0.765	1.00
204_P	266_I	0.757	1.00
411_L	418_F	0.757	1.00
287_I	307_T	0.756	1.00
419_E	423_I	0.749	1.00
140_F	154_I	0.749	1.00
328_I	332_N	0.747	1.00
121_K	124_R	0.745	1.00
349_F	388_Y	0.745	1.00
449_Q	452_L	0.743	1.00
344_D	347_K	0.743	1.00
349_F	352_S	0.741	1.00
416_E	455_F	0.740	1.00
166_S	280_A	0.740	1.00
215_T	266_I	0.740	1.00
320_I	351_L	0.739	1.00
324_A	347_K	0.733	1.00
140_F	158_K	0.733	1.00
54_N	57_D	0.732	1.00
312_P	315_E	0.731	1.00
416_E	420_K	0.729	1.00
369_A	384_L	0.727	1.00
208_V	246_L	0.727	1.00
120_T	123_E	0.726	1.00
437_A	448_L	0.724	1.00
136_T	186_N	0.718	1.00
219_A	223_A	0.717	1.00
340_E	370_M	0.716	1.00
115_I	122_L	0.716	1.00
159_R	337_M	0.714	1.00
237_T	279_I	0.710	1.00
230_F	263_I	0.710	1.00
60_M	72_A	0.708	1.00
317_K	322_L	0.708	1.00
68_T	72_A	0.708	1.00
145_G	151_Q	0.708	1.00
322_L	325_S	0.704	1.00
121_K	126_I	0.704	1.00
160_A	167_V	0.703	1.00
203_L	212_L	0.702	1.00
127_R	130_M	0.701	1.00
145_G	319_D	0.700	1.00
409_A	417_S	0.700	1.00
376_E	383_H	0.695	1.00
227_P	265_R	0.687	1.00
72_A	75_E	0.686	1.00
190_R	276_V	0.685	1.00
423_I	437_A	0.683	1.00
219_A	266_I	0.683	1.00
304_S	368_G	0.681	1.00
368_G	385_P	0.679	1.00
452_L	457_H	0.677	1.00
438_A	448_L	0.669	1.00
349_F	385_P	0.667	1.00
244_N	284_E	0.666	1.00
300_Y	304_S	0.665	1.00
58_V	76_G	0.664	1.00
287_I	290_I	0.663	1.00
446_Q	453_K	0.661	1.00
353_Y	388_Y	0.661	1.00
69_L	73_L	0.659	1.00
427_L	432_H	0.658	1.00
190_R	193_G	0.658	1.00
97_I	100_T	0.656	1.00
226_Q	229_L	0.656	1.00
444_S	449_Q	0.656	1.00
70_V	74_Q	0.652	1.00
423_I	452_L	0.650	1.00
161_T	187_G	0.648	0.99
324_A	369_A	0.646	0.99
210_S	220_F	0.646	0.99
435_S	449_Q	0.645	0.99
76_G	80_K	0.645	0.99
115_I	119_V	0.639	0.99
138_Y	142_S	0.637	0.99
320_I	350_F	0.637	0.99
146_T	318_E	0.635	0.99
55_L	62_S	0.635	0.99
164_S	335_F	0.635	0.99
287_I	300_Y	0.634	0.99
116_A	119_V	0.633	0.99
204_P	207_L	0.631	0.99
124_R	128_E	0.630	0.99
199_N	246_L	0.630	0.99
125_L	132_K	0.630	0.99
350_F	355_W	0.629	0.99
248_L	252_A	0.629	0.99
432_H	452_L	0.628	0.99
434_I	441_L	0.626	0.99
84_Q	89_N	0.625	0.99
263_I	272_T	0.625	0.99
185_H	237_T	0.624	0.99
413_E	421_Y	0.623	0.99
335_F	372_F	0.623	0.99
116_A	122_L	0.623	0.99
230_F	278_I	0.622	0.99
141_D	158_K	0.620	0.99
197_S	262_K	0.620	0.99
102_P	111_G	0.618	0.99
72_A	78_T	0.616	0.99
338_N	377_Q	0.616	0.99
125_L	128_E	0.615	0.99
178_E	260_E	0.613	0.99
329_Q	339_V	0.613	0.99
159_R	373_M	0.610	0.99
198_Q	229_L	0.610	0.99
99_H	102_P	0.609	0.99
322_L	326_E	0.608	0.99
212_L	250_L	0.608	0.99
203_L	208_V	0.606	0.99
55_L	61_F	0.606	0.99
182_Q	260_E	0.606	0.99
155_E	159_R	0.606	0.99
114_E	117_K	0.605	0.99
140_F	187_G	0.605	0.99
290_I	300_Y	0.604	0.99
86_Y	89_N	0.603	0.99
120_T	124_R	0.603	0.99
138_Y	141_D	0.603	0.99
263_I	271_D	0.603	0.99
411_L	422_V	0.601	0.99
69_L	79_I	0.601	0.99
94_I	98_N	0.599	0.99
119_V	122_L	0.597	0.99
324_A	328_I	0.596	0.99
434_I	437_A	0.594	0.99
145_G	149_A	0.593	0.99
170_A	283_N	0.591	0.99
237_T	277_R	0.591	0.99
119_V	123_E	0.590	0.99
197_S	260_E	0.589	0.99
105_Q	108_K	0.588	0.99
368_G	372_F	0.587	0.99
243_I	303_L	0.585	0.99
413_E	418_F	0.585	0.99
56_M	62_S	0.585	0.99
419_E	455_F	0.583	0.99
183_S	186_N	0.582	0.99
199_N	202_A	0.582	0.99
56_M	60_M	0.581	0.99
416_E	419_E	0.580	0.99
100_T	112_A	0.580	0.99
326_E	329_Q	0.580	0.99
69_L	77_K	0.580	0.99
426_V	429_K	0.579	0.99
118_D	124_R	0.579	0.99
343_S	381_A	0.578	0.99
130_M	134_G	0.578	0.99
67_S	72_A	0.578	0.99
413_E	417_S	0.575	0.99
156_N	368_G	0.575	0.99
450_Y	453_K	0.574	0.99
268_S	271_D	0.573	0.99
376_E	380_T	0.573	0.99
261_R	276_V	0.569	0.99
349_F	384_L	0.569	0.99
204_P	209_E	0.568	0.99
307_T	368_G	0.567	0.99
299_L	303_L	0.567	0.99
60_M	87_F	0.567	0.99
168_L	286_P	0.566	0.99
445_R	450_Y	0.565	0.99
198_Q	212_L	0.565	0.99
156_N	306_V	0.564	0.99
198_Q	238_L	0.564	0.99
149_A	153_V	0.563	0.99
306_V	372_F	0.563	0.99
346_V	369_A	0.562	0.99
415_M	419_E	0.562	0.99
337_M	340_E	0.562	0.99
141_D	186_N	0.561	0.99
423_I	441_L	0.561	0.99
417_S	420_K	0.559	0.99
293_E	297_K	0.558	0.98
284_E	293_E	0.557	0.98
257_A	274_I	0.557	0.98
234_H	261_R	0.556	0.98
117_K	124_R	0.555	0.98
62_S	96_T	0.554	0.98
145_G	180_F	0.552	0.98
144_L	179_L	0.552	0.98
155_E	375_D	0.551	0.98
229_L	269_T	0.550	0.98
109_I	113_V	0.550	0.98
331_N	334_L	0.548	0.98
235_G	276_V	0.548	0.98
261_R	274_I	0.547	0.98
85_S	89_N	0.547	0.98
173_T	297_K	0.546	0.98
121_K	128_E	0.546	0.98
162_R	188_S	0.545	0.98
150_I	180_F	0.545	0.98
120_T	126_I	0.544	0.98
339_V	370_M	0.543	0.98
443_I	451_R	0.542	0.98
412_K	416_E	0.541	0.98
349_F	353_Y	0.541	0.98
422_V	425_N	0.541	0.98
435_S	446_Q	0.540	0.98
412_K	426_V	0.540	0.98
365_M	368_G	0.539	0.98
203_L	229_L	0.538	0.98
74_Q	78_T	0.538	0.98
118_D	123_E	0.538	0.98
164_S	275_D	0.537	0.98
68_T	76_G	0.537	0.98
226_Q	232_Q	0.535	0.98
366_I	369_A	0.533	0.98
55_L	59_F	0.531	0.98
97_I	104_V	0.530	0.98
72_A	77_K	0.529	0.98
365_M	388_Y	0.528	0.98
117_K	120_T	0.528	0.98
215_T	223_A	0.527	0.98
365_M	384_L	0.526	0.98
434_I	444_S	0.526	0.98
341_H	377_Q	0.523	0.98
138_Y	182_Q	0.522	0.98
234_H	273_P	0.522	0.98
179_L	183_S	0.521	0.98
188_S	277_R	0.521	0.98
295_M	299_L	0.520	0.98
444_S	454_K	0.520	0.98
103_I	111_G	0.520	0.98
290_I	304_S	0.520	0.98
88_N	92_Q	0.519	0.98
55_L	60_M	0.518	0.98
434_I	443_I	0.516	0.98
160_A	308_L	0.514	0.97
444_S	451_R	0.512	0.97
188_S	237_T	0.511	0.97
257_A	260_E	0.510	0.97
324_A	350_F	0.510	0.97
139_T	186_N	0.509	0.97
207_L	221_T	0.509	0.97
52_N	55_L	0.508	0.97
334_L	363_E	0.507	0.97
87_F	90_K	0.507	0.97
305_V	367_E	0.507	0.97
246_L	254_L	0.506	0.97
211_I	229_L	0.506	0.97
87_F	91_G	0.506	0.97
104_V	111_G	0.506	0.97
117_K	121_K	0.506	0.97
116_A	120_T	0.504	0.97
194_P	232_Q	0.503	0.97
200_C	208_V	0.503	0.97
116_A	123_E	0.502	0.97
193_G	236_G	0.501	0.97
98_N	104_V	0.501	0.97
225_D	270_K	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4l4uA	2	0.8048	100	0.194	Contact Map
3dzdA	2	0.7744	100	0.381	Contact Map
1ojlA	3	0.6508	100	0.409	Contact Map
4fwgA	3	0.6074	100	0.608	Contact Map
4qhsA	3	0.5271	100	0.639	Contact Map
4qosA	1	0.5184	100	0.642	Contact Map
1qvrA	3	0.7961	100	0.672	Contact Map
1r6bX	1	0.8243	100	0.677	Contact Map
1hqcA	1	0.59	100	0.679	Contact Map
1in4A	1	0.5727	100	0.682	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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