LIPO - BACSU - GREMLIN Contacts

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LIPO - Lipoprotein LipO

UniProt:	P37966	Sequences: MKIRMRKKWMALPLAAMMIAGCSHSETSNSASGSKDTIKIMAPLLSPESPSDKSPSLKALEKYTGKEIKVTWVPDSSYNDKFNIVMASGEMPHAIVIKDKSAGFIKSVKAGAFWELSPYLKDYKNLSQADEKILKNSSVNGEVYGIYRTRDLIRACMIIRTDWLKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVLQIWFGAPNRYGVENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAKWNDPVVKGKAGVIVDTGSRASQIQSAMEEADESNKDIIDIVGSLEGPNGKRTFPTSGYSGMITIPKSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELKDGVFTSLEKNNKSLLYEHEGLAQFSMSIPKSEYYIEDQKTKLFQHRKDIITEGEKIAVFNPAESLVSDVYTQKGAQLDNIILDARTQFIIGEIDEKGFDDAVELWKKSGGNELMKDLNKLYQSSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	502 (396)
Sequences:	21060 (17718)
Seq/√Len:	890.4

ECOLI - UGPB YCJN MALE YDCS YNJB POTF POTD
BACSU - LIPO YTCQ YESO CYCB ARAN YURO MDXE MSME
HALSA - Q9HHQ8 Q9HP00 Q9HR87 Q9HNZ3
SULSO - Q97YY1 Q97UZ1 Q97UF5 Q97ZC3 Q97VC2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
37_T	69_K	3.819	1.00
252_K	256_D	3.631	1.00
114_W	346_L	3.428	1.00
162_D	308_I	3.372	1.00
411_Y	414_D	3.178	1.00
37_T	67_E	3.025	1.00
115_E	142_E	2.951	1.00
249_T	253_K	2.925	1.00
183_K	257_E	2.866	1.00
161_T	165_K	2.864	1.00
179_Y	253_K	2.843	1.00
161_T	310_D	2.835	1.00
64_T	351_S	2.831	1.00
39_K	69_K	2.816	1.00
253_K	257_E	2.812	1.00
245_M	413_E	2.711	1.00
54_S	58_K	2.577	1.00
59_A	62_K	2.510	1.00
174_T	177_D	2.498	1.00
159_I	310_D	2.488	1.00
66_K	348_E	2.440	1.00
61_E	67_E	2.408	1.00
77_S	80_D	2.399	1.00
242_K	246_D	2.389	1.00
138_S	143_V	2.388	1.00
60_L	351_S	2.310	1.00
351_S	354_D	2.292	1.00
131_E	135_K	2.280	1.00
345_E	348_E	2.273	1.00
183_K	187_E	2.267	1.00
117_S	142_E	2.261	1.00
177_D	180_E	2.229	1.00
164_L	283_V	2.220	1.00
413_E	417_T	2.215	1.00
180_E	184_A	2.213	1.00
162_D	166_N	2.182	1.00
58_K	62_K	2.137	1.00
55_P	58_K	2.117	1.00
420_F	424_K	2.116	1.00
417_T	421_Q	2.088	1.00
358_D	361_A	2.053	1.00
421_Q	425_D	2.031	1.00
14_L	17_M	2.028	1.00
93_H	345_E	2.020	1.00
424_K	428_T	2.004	1.00
169_L	181_V	1.997	1.00
246_D	249_T	1.969	1.00
41_M	85_V	1.959	1.00
59_A	63_Y	1.942	1.00
410_Y	418_K	1.932	1.00
184_A	188_K	1.906	1.00
39_K	71_T	1.862	1.00
268_D	271_K	1.861	1.00
180_E	183_K	1.852	1.00
113_F	334_T	1.837	1.00
135_K	138_S	1.822	1.00
61_E	64_T	1.817	1.00
240_T	417_T	1.808	1.00
15_A	18_M	1.781	1.00
363_I	367_N	1.739	1.00
347_K	351_S	1.711	1.00
339_S	345_E	1.703	1.00
230_V	234_K	1.699	1.00
59_A	355_K	1.697	1.00
176_D	179_Y	1.688	1.00
119_Y	350_L	1.677	1.00
57_L	61_E	1.671	1.00
179_Y	183_K	1.669	1.00
58_K	61_E	1.656	1.00
145_G	332_M	1.654	1.00
95_I	336_P	1.644	1.00
115_E	118_P	1.625	1.00
179_Y	254_L	1.619	1.00
157_M	312_V	1.617	1.00
202_V	281_A	1.600	1.00
245_M	249_T	1.582	1.00
57_L	352_F	1.579	1.00
179_Y	257_E	1.574	1.00
183_K	259_L	1.546	1.00
159_I	312_V	1.546	1.00
186_K	200_G	1.539	1.00
339_S	346_L	1.528	1.00
60_L	64_T	1.522	1.00
250_F	254_L	1.517	1.00
185_F	282_G	1.514	1.00
50_P	54_S	1.503	1.00
114_W	337_K	1.469	1.00
163_W	282_G	1.461	1.00
335_I	353_L	1.452	1.00
137_S	332_M	1.452	1.00
414_D	418_K	1.449	1.00
59_A	364_L	1.448	1.00
359_K	363_I	1.446	1.00
176_D	180_E	1.441	1.00
81_K	85_V	1.434	1.00
60_L	66_K	1.425	1.00
418_K	421_Q	1.423	1.00
249_T	412_I	1.420	1.00
161_T	308_I	1.418	1.00
86_M	91_M	1.412	1.00
163_W	185_F	1.410	1.00
172_P	177_D	1.403	1.00
339_S	349_V	1.394	1.00
179_Y	250_F	1.381	1.00
361_A	364_L	1.359	1.00
169_L	184_A	1.349	1.00
414_D	417_T	1.345	1.00
55_P	59_A	1.343	1.00
97_I	334_T	1.336	1.00
173_E	177_D	1.335	1.00
182_L	283_V	1.332	1.00
243_E	246_D	1.331	1.00
167_V	185_F	1.331	1.00
93_H	339_S	1.328	1.00
421_Q	424_K	1.325	1.00
418_K	422_H	1.306	1.00
108_V	144_Y	1.302	1.00
422_H	425_D	1.286	1.00
60_L	355_K	1.284	1.00
51_S	54_S	1.284	1.00
66_K	351_S	1.284	1.00
57_L	70_V	1.281	1.00
250_F	253_K	1.275	1.00
123_Y	354_D	1.269	1.00
275_P	280_K	1.266	1.00
276_V	309_I	1.252	1.00
94_A	353_L	1.251	1.00
12_L	16_A	1.245	1.00
137_S	143_V	1.232	1.00
11_A	17_M	1.226	1.00
245_M	412_I	1.221	1.00
157_M	283_V	1.220	1.00
125_N	128_Q	1.215	1.00
178_F	182_L	1.208	1.00
163_W	198_T	1.205	1.00
378_D	381_F	1.202	1.00
181_V	184_A	1.198	1.00
253_K	256_D	1.195	1.00
111_G	337_K	1.194	1.00
182_L	259_L	1.186	1.00
348_E	351_S	1.185	1.00
355_K	361_A	1.181	1.00
42_A	70_V	1.167	1.00
186_K	259_L	1.165	1.00
118_P	121_K	1.163	1.00
12_L	18_M	1.159	1.00
163_W	167_V	1.158	1.00
74_P	77_S	1.146	1.00
60_L	352_F	1.144	1.00
336_P	339_S	1.143	1.00
199_Y	262_K	1.142	1.00
121_K	127_S	1.140	1.00
178_F	201_M	1.138	1.00
352_F	356_M	1.131	1.00
337_K	346_L	1.130	1.00
61_E	65_G	1.128	1.00
51_S	55_P	1.127	1.00
271_K	274_D	1.124	1.00
410_Y	415_Q	1.121	1.00
382_T	385_E	1.117	1.00
249_T	413_E	1.116	1.00
94_A	349_V	1.114	1.00
156_C	311_I	1.108	1.00
165_K	171_M	1.106	1.00
128_Q	377_K	1.101	1.00
335_I	350_L	1.097	1.00
386_K	389_K	1.095	1.00
108_V	139_V	1.090	1.00
198_T	280_K	1.087	1.00
364_L	367_N	1.077	1.00
386_K	390_S	1.077	1.00
410_Y	414_D	1.076	1.00
417_T	420_F	1.076	1.00
164_L	169_L	1.074	1.00
185_F	189_D	1.072	1.00
114_W	339_S	1.072	1.00
221_W	226_N	1.069	1.00
165_K	170_D	1.069	1.00
274_D	278_K	1.067	1.00
352_F	355_K	1.067	1.00
381_F	385_E	1.066	1.00
178_F	283_V	1.065	1.00
350_L	354_D	1.063	1.00
11_A	14_L	1.062	1.00
68_I	352_F	1.062	1.00
164_L	181_V	1.062	1.00
381_F	384_L	1.061	1.00
134_L	138_S	1.056	1.00
398_L	401_F	1.056	1.00
163_W	166_N	1.052	1.00
364_L	368_G	1.048	1.00
22_C	25_S	1.042	1.00
40_I	333_I	1.034	1.00
38_I	352_F	1.029	1.00
11_A	15_A	1.029	1.00
189_D	198_T	1.028	1.00
124_K	127_S	1.024	1.00
167_V	188_K	1.023	1.00
60_L	348_E	1.019	1.00
91_M	336_P	1.017	1.00
82_F	95_I	1.017	1.00
176_D	318_P	1.012	1.00
7_K	14_L	1.008	1.00
160_R	163_W	1.002	1.00
179_Y	259_L	0.997	1.00
16_A	19_I	0.994	1.00
63_Y	360_E	0.994	1.00
335_I	349_V	0.992	1.00
15_A	19_I	0.991	1.00
94_A	352_F	0.989	1.00
166_N	198_T	0.978	1.00
125_N	354_D	0.973	1.00
86_M	112_A	0.973	1.00
360_E	363_I	0.973	1.00
165_K	308_I	0.967	1.00
89_G	338_S	0.966	1.00
413_E	416_K	0.965	1.00
403_M	407_K	0.963	1.00
181_V	283_V	0.962	1.00
117_S	121_K	0.961	1.00
346_L	350_L	0.960	1.00
7_K	10_M	0.955	1.00
169_L	185_F	0.954	1.00
182_L	200_G	0.953	1.00
10_M	14_L	0.952	1.00
79_N	103_G	0.950	1.00
249_T	252_K	0.946	1.00
385_E	389_K	0.944	1.00
13_P	16_A	0.941	1.00
246_D	250_F	0.939	1.00
95_I	334_T	0.939	1.00
184_A	187_E	0.935	1.00
81_K	84_I	0.932	1.00
286_D	290_R	0.930	1.00
57_L	68_I	0.930	1.00
240_T	420_F	0.929	1.00
167_V	184_A	0.927	1.00
145_G	334_T	0.923	1.00
10_M	16_A	0.918	1.00
293_Q	296_S	0.918	1.00
7_K	17_M	0.917	1.00
258_G	262_K	0.916	1.00
134_L	143_V	0.913	1.00
56_S	59_A	0.912	1.00
19_I	22_C	0.909	1.00
120_L	143_V	0.907	1.00
162_D	165_K	0.902	1.00
12_L	15_A	0.902	1.00
11_A	18_M	0.901	1.00
254_L	259_L	0.900	1.00
238_D	241_T	0.897	1.00
14_L	18_M	0.894	1.00
186_K	189_D	0.893	1.00
275_P	281_A	0.890	1.00
119_Y	347_K	0.886	1.00
242_K	245_M	0.885	1.00
22_C	26_E	0.883	1.00
84_I	88_S	0.879	1.00
395_H	398_L	0.879	1.00
224_A	246_D	0.878	1.00
124_K	128_Q	0.874	1.00
425_D	428_T	0.873	1.00
114_W	336_P	0.872	1.00
95_I	113_F	0.868	1.00
5_M	17_M	0.867	1.00
41_M	73_V	0.857	1.00
13_P	17_M	0.856	1.00
117_S	138_S	0.856	1.00
59_A	360_E	0.851	1.00
239_F	244_Y	0.850	1.00
170_D	173_E	0.847	1.00
117_S	143_V	0.846	1.00
113_F	144_Y	0.844	1.00
10_M	17_M	0.837	1.00
65_G	351_S	0.834	1.00
33_G	36_D	0.833	1.00
359_K	377_K	0.829	1.00
400_Q	403_M	0.827	1.00
114_W	119_Y	0.826	1.00
52_D	55_P	0.825	1.00
159_I	171_M	0.825	1.00
360_E	364_L	0.816	1.00
171_M	177_D	0.811	1.00
41_M	92_P	0.810	1.00
114_W	335_I	0.810	1.00
85_V	90_E	0.810	1.00
170_D	181_V	0.808	1.00
8_K	15_A	0.808	1.00
164_L	185_F	0.804	1.00
392_L	395_H	0.801	1.00
412_I	415_Q	0.799	1.00
379_G	384_L	0.798	1.00
385_E	388_N	0.798	1.00
398_L	402_S	0.795	1.00
108_V	113_F	0.792	1.00
415_Q	419_L	0.791	1.00
7_K	18_M	0.789	1.00
380_V	383_S	0.788	1.00
186_K	258_G	0.787	1.00
370_K	374_Y	0.787	1.00
73_V	81_K	0.787	1.00
182_L	186_K	0.786	1.00
261_N	275_P	0.786	1.00
138_S	141_G	0.784	1.00
41_M	71_T	0.782	1.00
346_L	349_V	0.781	1.00
167_V	189_D	0.781	1.00
21_G	24_H	0.780	1.00
131_E	376_L	0.779	1.00
38_I	345_E	0.775	1.00
409_E	415_Q	0.773	1.00
335_I	339_S	0.772	1.00
349_V	353_L	0.771	1.00
10_M	13_P	0.770	1.00
227_R	230_V	0.767	1.00
411_Y	415_Q	0.766	1.00
7_K	11_A	0.765	1.00
158_I	286_D	0.765	1.00
55_P	364_L	0.765	1.00
38_I	349_V	0.765	1.00
55_P	368_G	0.764	1.00
80_D	84_I	0.763	1.00
221_W	244_Y	0.763	1.00
171_M	181_V	0.762	1.00
403_M	406_P	0.762	1.00
35_K	67_E	0.761	1.00
18_M	21_G	0.761	1.00
392_L	398_L	0.761	1.00
115_E	144_Y	0.760	1.00
171_M	312_V	0.759	1.00
38_I	348_E	0.758	1.00
393_Y	397_G	0.756	1.00
241_T	244_Y	0.752	1.00
129_A	357_N	0.751	1.00
9_W	13_P	0.751	1.00
166_N	188_K	0.751	1.00
402_S	405_I	0.749	1.00
392_L	396_E	0.749	1.00
114_W	118_P	0.748	1.00
175_L	179_Y	0.746	1.00
166_N	189_D	0.746	1.00
378_D	383_S	0.745	1.00
227_R	231_E	0.743	1.00
252_K	412_I	0.741	1.00
274_D	277_V	0.741	1.00
397_G	400_Q	0.732	1.00
245_M	416_K	0.728	1.00
378_D	382_T	0.727	1.00
169_L	172_P	0.726	1.00
148_R	333_I	0.726	1.00
181_V	185_F	0.722	1.00
61_E	68_I	0.719	1.00
399_A	403_M	0.718	1.00
56_S	361_A	0.717	1.00
63_Y	355_K	0.712	1.00
94_A	333_I	0.711	1.00
119_Y	346_L	0.710	1.00
292_S	296_S	0.710	1.00
22_C	28_S	0.709	1.00
416_K	419_L	0.709	1.00
402_S	406_P	0.708	1.00
408_S	411_Y	0.707	1.00
167_V	181_V	0.706	1.00
131_E	134_L	0.706	1.00
167_V	198_T	0.706	1.00
123_Y	350_L	0.699	1.00
347_K	350_L	0.698	1.00
38_I	41_M	0.697	1.00
179_Y	182_L	0.697	1.00
226_N	244_Y	0.696	1.00
132_K	135_K	0.695	1.00
399_A	402_S	0.694	1.00
217_V	221_W	0.693	1.00
129_A	134_L	0.692	1.00
13_P	18_M	0.692	1.00
9_W	16_A	0.690	1.00
270_A	273_N	0.690	1.00
5_M	18_M	0.686	1.00
86_M	336_P	0.685	1.00
318_P	321_K	0.685	1.00
175_L	250_F	0.685	1.00
393_Y	396_E	0.684	1.00
59_A	361_A	0.683	1.00
270_A	274_D	0.683	1.00
118_P	350_L	0.682	1.00
8_K	18_M	0.681	1.00
183_K	186_K	0.679	1.00
392_L	402_S	0.678	1.00
185_F	283_V	0.677	1.00
395_H	399_A	0.675	1.00
247_A	251_F	0.674	1.00
248_L	416_K	0.672	1.00
382_T	386_K	0.669	1.00
396_E	400_Q	0.668	1.00
5_M	14_L	0.667	1.00
411_Y	416_K	0.667	1.00
20_A	24_H	0.665	1.00
40_I	94_A	0.664	1.00
8_K	12_L	0.664	1.00
56_S	355_K	0.663	1.00
8_K	11_A	0.663	1.00
16_A	20_A	0.663	1.00
230_V	238_D	0.660	1.00
199_Y	261_N	0.659	1.00
387_N	390_S	0.658	1.00
167_V	282_G	0.657	1.00
98_K	102_A	0.657	1.00
159_I	164_L	0.653	1.00
83_N	106_K	0.650	1.00
252_K	255_Y	0.650	1.00
163_W	189_D	0.650	1.00
218_L	221_W	0.649	1.00
371_G	375_E	0.643	1.00
420_F	423_R	0.642	1.00
408_S	416_K	0.641	1.00
408_S	415_Q	0.640	1.00
198_T	282_G	0.640	1.00
255_Y	260_I	0.638	1.00
25_S	28_S	0.637	1.00
393_Y	398_L	0.636	1.00
151_D	331_G	0.634	1.00
118_P	122_D	0.632	1.00
237_P	424_K	0.632	1.00
160_R	279_G	0.630	1.00
186_K	199_Y	0.630	1.00
105_I	109_K	0.629	1.00
230_V	233_G	0.629	1.00
396_E	403_M	0.627	1.00
398_L	405_I	0.626	1.00
200_G	259_L	0.625	1.00
119_Y	123_Y	0.623	1.00
339_S	344_K	0.621	1.00
186_K	198_T	0.620	1.00
22_C	27_T	0.619	1.00
79_N	106_K	0.619	1.00
371_G	374_Y	0.619	1.00
397_G	401_F	0.618	1.00
71_T	81_K	0.618	1.00
56_S	356_M	0.616	1.00
8_K	14_L	0.615	1.00
12_L	17_M	0.615	1.00
118_P	142_E	0.615	1.00
104_F	108_V	0.614	1.00
202_V	272_W	0.613	1.00
64_T	352_F	0.613	1.00
185_F	198_T	0.612	1.00
19_I	24_H	0.609	1.00
222_F	227_R	0.609	1.00
267_M	275_P	0.608	1.00
122_D	347_K	0.608	1.00
165_K	168_G	0.608	1.00
394_E	401_F	0.606	1.00
130_D	376_L	0.606	1.00
63_Y	358_D	0.605	1.00
78_Y	82_F	0.605	1.00
164_L	171_M	0.605	1.00
248_L	415_Q	0.605	1.00
220_I	223_G	0.604	1.00
65_G	348_E	0.602	1.00
56_S	364_L	0.602	1.00
77_S	81_K	0.599	1.00
104_F	145_G	0.599	1.00
26_E	29_N	0.595	1.00
379_G	383_S	0.595	1.00
57_L	64_T	0.592	1.00
424_K	427_I	0.591	1.00
423_R	427_I	0.591	1.00
158_I	311_I	0.591	1.00
380_V	384_L	0.591	1.00
160_R	308_I	0.590	1.00
40_I	352_F	0.589	1.00
296_S	299_E	0.589	1.00
9_W	15_A	0.589	1.00
398_L	406_P	0.588	1.00
111_G	114_W	0.586	1.00
103_G	106_K	0.584	1.00
419_L	423_R	0.584	1.00
275_P	278_K	0.584	1.00
416_K	420_F	0.582	1.00
241_T	245_M	0.579	1.00
5_M	15_A	0.579	1.00
6_R	13_P	0.577	1.00
316_E	320_G	0.577	1.00
75_D	79_N	0.576	1.00
188_K	198_T	0.576	1.00
272_W	284_I	0.574	1.00
206_W	268_D	0.574	1.00
119_Y	122_D	0.574	1.00
409_E	412_I	0.573	1.00
112_A	115_E	0.573	1.00
423_R	426_I	0.572	1.00
231_E	234_K	0.572	1.00
54_S	57_L	0.571	1.00
408_S	412_I	0.571	1.00
64_T	348_E	0.570	1.00
48_E	51_S	0.569	1.00
379_G	382_T	0.568	1.00
71_T	85_V	0.567	1.00
21_G	25_S	0.566	1.00
79_N	98_K	0.565	1.00
298_M	301_A	0.565	1.00
91_M	338_S	0.564	1.00
157_M	285_V	0.562	1.00
404_S	407_K	0.561	1.00
80_D	83_N	0.560	1.00
9_W	12_L	0.558	1.00
5_M	8_K	0.557	1.00
394_E	397_G	0.557	1.00
137_S	145_G	0.556	1.00
173_E	316_E	0.556	1.00
158_I	309_I	0.555	1.00
116_L	353_L	0.554	1.00
60_L	68_I	0.554	1.00
106_K	110_A	0.552	1.00
98_K	329_Y	0.552	1.00
107_S	113_F	0.551	1.00
293_Q	297_A	0.551	1.00
383_S	387_N	0.551	1.00
187_E	198_T	0.551	1.00
130_D	133_I	0.550	1.00
164_L	170_D	0.549	1.00
36_D	345_E	0.549	1.00
296_S	300_E	0.548	1.00
114_W	350_L	0.547	1.00
40_I	57_L	0.547	1.00
97_I	113_F	0.547	1.00
295_Q	309_I	0.547	1.00
85_V	92_P	0.547	1.00
381_F	386_K	0.546	1.00
52_D	56_S	0.545	1.00
391_L	394_E	0.545	1.00
20_A	23_S	0.544	1.00
290_R	293_Q	0.543	1.00
104_F	113_F	0.543	1.00
392_L	397_G	0.540	1.00
61_E	66_K	0.539	1.00
291_A	295_Q	0.537	1.00
391_L	398_L	0.537	1.00
297_A	300_E	0.537	1.00
158_I	291_A	0.536	1.00
216_D	219_Q	0.536	1.00
38_I	93_H	0.535	1.00
30_S	33_G	0.535	1.00
401_F	406_P	0.534	1.00
345_E	349_V	0.534	1.00
221_W	224_A	0.533	1.00
127_S	134_L	0.532	1.00
164_L	282_G	0.532	1.00
378_D	384_L	0.531	1.00
98_K	331_G	0.531	1.00
243_E	247_A	0.530	1.00
97_I	107_S	0.529	1.00
114_W	338_S	0.528	1.00
246_D	318_P	0.527	1.00
384_L	388_N	0.526	1.00
38_I	94_A	0.525	1.00
183_K	253_K	0.524	1.00
409_E	416_K	0.523	1.00
128_Q	376_L	0.521	1.00
244_Y	248_L	0.520	1.00
185_F	188_K	0.519	1.00
330_S	333_I	0.518	1.00
79_N	107_S	0.518	1.00
219_Q	222_F	0.518	1.00
172_P	283_V	0.515	1.00
35_K	65_G	0.515	1.00
93_H	349_V	0.515	1.00
383_S	388_N	0.514	1.00
24_H	27_T	0.513	1.00
202_V	267_M	0.512	1.00
120_L	350_L	0.511	1.00
218_L	222_F	0.510	1.00
182_L	254_L	0.510	1.00
393_Y	401_F	0.510	1.00
93_H	346_L	0.509	1.00
362_Q	374_Y	0.509	1.00
335_I	346_L	0.509	1.00
177_D	181_V	0.508	1.00
401_F	405_I	0.508	1.00
93_H	344_K	0.507	1.00
61_E	352_F	0.507	1.00
28_S	31_A	0.506	1.00
219_Q	223_G	0.506	1.00
29_N	32_S	0.505	1.00
73_V	78_Y	0.504	1.00
261_N	264_F	0.503	1.00
27_T	30_S	0.502	1.00
40_I	53_K	0.502	1.00
5_M	16_A	0.502	1.00
165_K	310_D	0.502	1.00
396_E	399_A	0.501	1.00
277_V	297_A	0.501	1.00
162_D	279_G	0.500	1.00
75_D	78_Y	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ombA	1	0.9084	100	0.247	Contact Map
3a09A	1	0.9143	100	0.33	Contact Map
4r2fA	1	0.7211	100	0.338	Contact Map
4mfiA	1	0.7849	100	0.355	Contact Map
3uorA	1	0.747	100	0.357	Contact Map
4r9fA	1	0.753	100	0.36	Contact Map
3vxbA	1	0.759	100	0.365	Contact Map
4r6kA	1	0.7271	100	0.371	Contact Map
4r6hA	1	0.747	100	0.388	Contact Map
4ovjA	1	0.7171	100	0.392	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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