GREMLIN Database
YBXB - Uncharacterized protein YbxB
UniProt: P37872 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 201 (182)
Sequences: 9184 (6706)
Seq/√Len: 497.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
9_K14_S3.9441.00
31_T100_E3.7491.00
22_R29_T3.4021.00
73_G87_M2.7881.00
63_L127_F2.7091.00
86_H113_Y2.6381.00
128_A155_K2.6321.00
86_H127_F2.3761.00
35_G93_R2.3601.00
92_E114_Q2.3541.00
115_S120_N2.2541.00
61_G84_T2.0751.00
150_S160_L2.0641.00
73_G85_I2.0571.00
26_K79_D1.9901.00
31_T104_Q1.9311.00
33_D97_L1.9231.00
102_A112_I1.9031.00
28_F78_S1.8931.00
67_C98_S1.8751.00
147_F177_L1.8511.00
24_R29_T1.7831.00
76_L131_L1.7681.00
52_S187_V1.7581.00
154_L158_G1.7541.00
17_Q23_L1.7361.00
118_F153_H1.7321.00
145_A149_K1.5911.00
74_L107_I1.5701.00
162_I177_L1.5681.00
45_G48_L1.5551.00
77_A85_I1.5271.00
95_V112_I1.5261.00
57_E60_G1.5041.00
21_F31_T1.4801.00
169_G186_V1.4791.00
74_L102_A1.4701.00
116_D145_A1.4651.00
95_V114_Q1.4321.00
138_A144_H1.3911.00
117_L142_V1.3871.00
46_S72_I1.3761.00
148_E180_L1.3631.00
61_G86_H1.3621.00
86_H111_K1.3481.00
67_C89_D1.3471.00
49_L161_W1.3441.00
126_T155_K1.3401.00
28_F79_D1.3361.00
53_F161_W1.3301.00
175_E179_E1.3191.00
28_F75_S1.3121.00
36_V69_Y1.3111.00
174_I178_E1.3061.00
54_E80_F1.3021.00
80_F83_R1.3011.00
149_K152_E1.2911.00
89_D95_V1.2891.00
24_R27_D1.2791.00
52_S55_E1.2771.00
30_F75_S1.2681.00
87_M112_I1.2521.00
14_S34_S1.2471.00
98_S112_I1.2471.00
118_F149_K1.2381.00
53_F131_L1.2231.00
116_D119_S1.2201.00
67_C73_G1.2181.00
143_V162_I1.2141.00
84_T111_K1.2061.00
53_F129_S1.2041.00
29_T104_Q1.1991.00
87_M110_V1.1961.00
166_K193_Y1.1881.00
100_E104_Q1.1851.00
26_K51_D1.1711.00
48_L190_K1.1691.00
62_I83_R1.1631.00
61_G155_K1.1541.00
14_S19_W1.1451.00
132_T162_I1.1251.00
65_V117_L1.1221.00
174_I186_V1.1211.00
91_N94_A1.1121.00
62_I129_S1.1121.00
62_I85_I1.1101.00
61_G128_A1.1051.00
88_I121_V1.1031.00
61_G125_Q1.0931.00
117_L145_A1.0921.00
62_I76_L1.0911.00
144_H176_K1.0821.00
17_Q38_S1.0791.00
61_G127_F1.0751.00
99_N103_E1.0671.00
102_A110_V1.0481.00
72_I131_L1.0431.00
30_F74_L1.0371.00
75_S79_D1.0231.00
73_G110_V1.0121.00
138_A141_K1.0121.00
164_I169_G0.9991.00
100_E103_E0.9961.00
50_I75_S0.9821.00
140_K172_S0.9771.00
164_I196_I0.9721.00
48_L195_I0.9711.00
35_G97_L0.9691.00
102_A107_I0.9651.00
127_F130_I0.9581.00
88_I115_S0.9571.00
64_D73_G0.9561.00
60_G128_A0.9481.00
165_Q168_Q0.9351.00
52_S195_I0.9221.00
147_F176_K0.9171.00
111_K125_Q0.9121.00
86_H125_Q0.9071.00
78_S105_N0.8991.00
129_S161_W0.8981.00
150_S181_F0.8831.00
26_K78_S0.8811.00
66_G142_V0.8671.00
143_V173_A0.8591.00
65_V146_I0.8501.00
28_F105_N0.8491.00
171_P175_E0.8461.00
143_V164_I0.8391.00
32_S97_L0.8381.00
26_K75_S0.8351.00
74_L105_N0.8301.00
187_V195_I0.8281.00
54_E79_D0.8271.00
186_V196_I0.8231.00
73_G77_A0.8211.00
33_D100_E0.8191.00
176_K180_L0.8161.00
18_T38_S0.8131.00
140_K176_K0.8081.00
36_V97_L0.8061.00
78_S107_I0.8021.00
103_E108_T0.7991.00
96_E99_N0.7931.00
142_V145_A0.7861.00
175_E178_E0.7841.00
77_A110_V0.7771.00
46_S50_I0.7751.00
56_P60_G0.7731.00
60_G83_R0.7731.00
65_V88_I0.7691.00
95_V99_N0.7691.00
47_R51_D0.7671.00
30_F71_P0.7641.00
87_M98_S0.7561.00
148_E176_K0.7521.00
189_K194_Y0.7511.00
48_L52_S0.7461.00
44_F47_R0.7461.00
115_S118_F0.7401.00
64_D67_C0.7401.00
99_N102_A0.7371.00
56_P59_E0.7351.00
44_F190_K0.7351.00
147_F173_A0.7311.00
115_S121_V0.7291.00
144_H148_E0.7291.00
32_S36_V0.7161.00
50_I72_I0.7161.00
61_G126_T0.7141.00
30_F69_Y0.7121.00
74_L101_N0.7121.00
10_P19_W0.7091.00
77_A108_T0.7021.00
140_K144_H0.7021.00
174_I196_I0.7001.00
65_V118_F0.6991.00
132_T146_I0.6961.00
52_S161_W0.6871.00
161_W187_V0.6851.00
16_K100_E0.6771.00
164_I173_A0.6731.00
16_K20_S0.6721.00
92_E96_E0.6721.00
141_K145_A0.6691.00
76_L83_R0.6681.00
60_G80_F0.6681.00
169_G193_Y0.6631.00
118_F130_I0.6621.00
63_L88_I0.6591.00
174_I184_V0.6581.00
167_K193_Y0.6581.00
147_F162_I0.6561.00
129_S159_E0.6551.00
50_I76_L0.6501.00
49_L131_L0.6491.00
144_H179_E0.6481.00
49_L53_F0.6461.00
32_S69_Y0.6431.00
99_N112_I0.6421.00
172_S175_E0.6411.00
22_R104_Q0.6411.00
143_V147_F0.6401.00
27_D78_S0.6391.00
88_I113_Y0.6381.00
67_C112_I0.6371.00
164_I186_V0.6341.00
169_G174_I0.6331.00
166_K169_G0.6311.00
178_E184_V0.6311.00
53_F76_L0.6301.00
51_D55_E0.6301.00
141_K144_H0.6271.00
130_I153_H0.6251.00
59_E82_D0.6211.00
67_C87_M0.6131.00
130_I150_S0.6110.99
190_K193_Y0.6030.99
117_L146_I0.6010.99
188_Q192_G0.5990.99
27_D79_D0.5960.99
77_A107_I0.5950.99
9_K12_V0.5940.99
18_T35_G0.5920.99
146_I160_L0.5870.99
75_S78_S0.5830.99
50_I71_P0.5820.99
145_A148_E0.5800.99
151_A180_L0.5760.99
162_I173_A0.5740.99
147_F180_L0.5730.99
77_A102_A0.5720.99
83_R128_A0.5710.99
76_L80_F0.5650.99
32_S39_K0.5650.99
22_R31_T0.5640.99
30_F105_N0.5640.99
48_L51_D0.5600.99
50_I54_E0.5590.99
148_E151_A0.5540.99
171_P174_I0.5540.99
186_V189_K0.5530.99
122_D153_H0.5520.99
59_E84_T0.5520.99
149_K153_H0.5520.99
58_V82_D0.5510.99
66_G117_L0.5510.99
160_L177_L0.5470.99
68_G133_N0.5460.99
96_E100_E0.5450.99
89_D98_S0.5430.99
33_D93_R0.5410.99
164_I174_I0.5390.99
181_F184_V0.5380.99
93_R96_E0.5360.99
113_Y125_Q0.5350.99
18_T32_S0.5340.99
62_I80_F0.5300.99
14_S18_T0.5280.99
45_G195_I0.5200.98
102_A105_N0.5160.98
16_K23_L0.5160.98
49_L195_I0.5140.98
134_P173_A0.5110.98
11_S16_K0.5100.98
90_V114_Q0.5100.98
177_L196_I0.5050.98
49_L72_I0.5050.98
113_Y120_N0.5040.98
151_A181_F0.5030.98
45_G191_K0.5030.98
188_Q193_Y0.5030.98
72_I132_T0.5000.98
33_D96_E0.5000.98
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2b3tA 1 0.9751 100 0.378 Contact Map
1nv8A 1 0.9353 100 0.392 Contact Map
4dcmA 1 0.9254 100 0.443 Contact Map
2pjdA 1 0.9602 100 0.491 Contact Map
3dmgA 1 0.9652 100 0.493 Contact Map
1dusA 1 0.9552 100 0.497 Contact Map
3c6kA 2 0.9652 99.9 0.52 Contact Map
3evzA 1 0.9104 99.9 0.542 Contact Map
4dzrA 2 0.7363 99.9 0.544 Contact Map
1uwvA 1 0.9403 99.9 0.556 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0077 seconds.