ATPA - BACSU - GREMLIN Contacts

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ATPA - ATP synthase subunit alpha

UniProt:	P37808	Sequences: MSIKAEEISTLIKQQIQNYQSDIEVQDVGTVIQVGDGIARVHGLDNCMAGELVEFSNGVLGMAQNLEESNVGIVILGPFSEIREGDEVKRTGRIMEVPVGEELIGRIVNPLGQPVDGLGPILTSKTRPIESPAPGVMDRKSVHEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTSVAIDAILNQKDQDMICVYVAIGQKESTVRGVVETLRKHGALDYTIVVTASASQPAPLLYLAPYAGVTMAEEFMYNGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDAKGAGSITALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGSAQIKAMKKVSGTLRLDLASYRELEAFAQFGSDLDQATQAKLNRGARTVEVLKQDLNKPLPVEKQVAILYALTKGYLDDIPVADIRRFEEEYYMYLDQNHKDLLDGIAKTGNLPADEDFKAAIEGFKRTFAPSN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	502 (428)
Sequences:	7713 (2597)
Seq/√Len:	125.5

ECOLI - ATPA FLII ATPB RHO
BACSU - ATPA FLII ATPB RHO
HALSA - VATB VATA
SULSO - VATB VATA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
109_N	113_Q	7.977	1.00
161_R	255_H	4.536	1.00
196_V	242_G	4.454	1.00
345_Q	358_N	4.164	1.00
41_V	73_I	3.829	1.00
429_P	432_K	3.717	1.00
152_A	357_I	3.342	1.00
51_E	90_R	3.326	1.00
374_A	438_Y	3.155	1.00
382_L	416_T	3.061	1.00
53_V	73_I	3.025	1.00
106_R	116_D	2.811	1.00
93_R	96_E	2.809	1.00
53_V	88_V	2.716	1.00
54_E	89_K	2.606	1.00
47_C	63_A	2.596	1.00
61_G	73_I	2.596	1.00
194_V	246_A	2.540	1.00
144_E	161_R	2.529	1.00
101_E	254_K	2.493	1.00
243_V	317_P	2.427	1.00
102_E	124_S	2.409	1.00
96_E	126_T	2.363	1.00
246_A	313_I	2.341	1.00
159_I	316_L	2.320	1.00
151_K	428_L	2.298	1.00
177_S	424_L	2.269	1.00
381_T	384_L	2.268	1.00
371_Q	376_K	2.248	1.00
215_H	219_D	2.191	1.00
155_A	433_Q	2.164	1.00
41_V	88_V	2.162	1.00
108_V	245_M	2.146	1.00
348_L	353_V	2.141	1.00
224_V	245_M	2.138	1.00
326_I	343_F	2.103	1.00
127_R	131_S	2.102	1.00
40_R	70_N	2.087	1.00
210_E	213_R	2.047	1.00
216_G	219_D	1.993	1.00
390_R	393_E	1.986	1.00
210_E	214_K	1.984	1.00
31_V	82_I	1.982	1.00
381_T	408_A	1.982	1.00
373_K	377_K	1.980	1.00
118_L	213_R	1.969	1.00
156_L	382_L	1.967	1.00
48_M	51_E	1.933	1.00
206_R	210_E	1.927	1.00
209_V	223_V	1.869	1.00
33_Q	40_R	1.862	1.00
159_I	342_I	1.860	1.00
378_V	438_Y	1.853	1.00
28_V	87_E	1.840	1.00
413_G	417_V	1.839	1.00
222_I	245_M	1.786	1.00
144_E	303_K	1.771	1.00
32_I	42_H	1.771	1.00
127_R	244_T	1.767	1.00
127_R	248_E	1.761	1.00
147_Q	154_D	1.750	1.00
151_K	457_E	1.745	1.00
247_E	300_R	1.739	1.00
449_P	452_D	1.724	1.00
353_V	417_V	1.720	1.00
106_R	118_L	1.711	1.00
443_G	446_D	1.702	1.00
351_S	417_V	1.684	1.00
51_E	92_G	1.680	1.00
155_A	419_V	1.662	1.00
98_P	126_T	1.653	1.00
353_V	421_K	1.653	1.00
418_E	421_K	1.649	1.00
125_K	252_N	1.625	1.00
27_D	90_R	1.621	1.00
439_A	444_Y	1.617	1.00
319_V	334_V	1.614	1.00
396_A	410_L	1.614	1.00
393_E	397_Q	1.602	1.00
352_G	380_G	1.598	1.00
250_M	304_L	1.585	1.00
448_I	452_D	1.582	1.00
97_V	245_M	1.576	1.00
452_D	455_R	1.575	1.00
114_P	119_G	1.574	1.00
170_D	173_T	1.571	1.00
194_V	245_M	1.549	1.00
378_V	434_V	1.548	1.00
108_V	224_V	1.518	1.00
103_L	245_M	1.516	1.00
146_L	191_M	1.509	1.00
30_T	87_E	1.500	1.00
411_N	414_A	1.482	1.00
158_P	367_G	1.481	1.00
31_V	86_D	1.478	1.00
55_F	61_G	1.475	1.00
102_E	122_L	1.453	1.00
255_H	312_S	1.452	1.00
423_D	426_K	1.447	1.00
439_A	445_L	1.447	1.00
101_E	248_E	1.444	1.00
41_V	44_L	1.432	1.00
95_M	129_I	1.431	1.00
166_L	338_T	1.428	1.00
448_I	456_F	1.406	1.00
264_S	268_A	1.405	1.00
32_I	70_N	1.405	1.00
198_I	238_A	1.399	1.00
196_V	260_Y	1.398	1.00
375_M	434_V	1.393	1.00
248_E	252_N	1.389	1.00
367_G	379_S	1.389	1.00
102_E	123_T	1.381	1.00
106_R	119_G	1.377	1.00
177_S	425_N	1.375	1.00
388_S	391_E	1.373	1.00
388_S	406_T	1.365	1.00
54_E	91_T	1.365	1.00
213_R	218_L	1.358	1.00
47_C	71_V	1.344	1.00
239_P	297_L	1.344	1.00
127_R	251_Y	1.341	1.00
148_T	159_I	1.338	1.00
93_R	126_T	1.335	1.00
26_Q	89_K	1.331	1.00
97_V	241_A	1.331	1.00
109_N	230_Q	1.328	1.00
256_V	313_I	1.322	1.00
211_T	369_S	1.322	1.00
243_V	301_A	1.320	1.00
106_R	114_P	1.316	1.00
328_A	331_P	1.314	1.00
47_C	53_V	1.313	1.00
253_G	310_A	1.311	1.00
384_L	405_A	1.303	1.00
435_A	439_A	1.302	1.00
131_S	251_Y	1.302	1.00
351_S	393_E	1.296	1.00
34_V	82_I	1.289	1.00
380_G	383_R	1.282	1.00
298_L	337_I	1.259	1.00
56_S	86_D	1.252	1.00
197_A	205_V	1.247	1.00
79_F	82_I	1.239	1.00
60_L	113_Q	1.234	0.99
392_L	406_T	1.234	0.99
142_V	160_G	1.226	0.99
294_H	334_V	1.225	0.99
270_Y	293_L	1.210	0.99
214_K	217_A	1.207	0.99
432_K	436_I	1.206	0.99
347_D	350_F	1.202	0.99
107_I	209_V	1.201	0.99
147_Q	430_V	1.194	0.99
404_Q	408_A	1.192	0.99
53_V	61_G	1.190	0.99
190_D	254_K	1.188	0.99
438_Y	442_K	1.182	0.99
243_V	313_I	1.181	0.99
42_H	69_S	1.175	0.99
104_I	222_I	1.174	0.99
361_L	390_R	1.173	0.99
368_G	376_K	1.165	0.99
366_V	370_A	1.162	0.99
153_I	183_I	1.161	0.99
140_K	143_H	1.157	0.99
123_T	126_T	1.156	0.99
138_D	309_G	1.155	0.99
381_T	385_D	1.150	0.99
30_T	42_H	1.149	0.99
159_I	314_T	1.143	0.99
372_I	430_V	1.137	0.99
157_I	342_I	1.135	0.99
42_H	70_N	1.130	0.99
274_S	282_G	1.128	0.99
416_T	440_L	1.125	0.99
110_P	241_A	1.120	0.99
408_A	412_R	1.113	0.99
298_L	334_V	1.113	0.99
153_I	342_I	1.111	0.99
75_I	79_F	1.104	0.99
263_L	334_V	1.103	0.99
412_R	446_D	1.099	0.99
191_M	249_F	1.085	0.99
54_E	60_L	1.084	0.99
222_I	249_F	1.083	0.99
202_E	227_S	1.076	0.99
148_T	316_L	1.070	0.99
106_R	121_I	1.067	0.99
445_L	456_F	1.058	0.98
191_M	254_K	1.054	0.98
101_E	252_N	1.053	0.98
170_D	346_S	1.048	0.98
106_R	115_V	1.043	0.98
40_R	67_E	1.041	0.98
125_K	248_E	1.040	0.98
367_G	371_Q	1.035	0.98
240_Y	293_L	1.034	0.98
184_L	221_T	1.032	0.98
196_V	258_V	1.031	0.98
321_T	328_A	1.031	0.98
321_T	331_P	1.028	0.98
353_V	420_L	1.025	0.98
251_Y	304_L	1.022	0.98
77_G	234_L	1.017	0.98
127_R	252_N	1.017	0.98
358_N	361_L	1.016	0.98
376_K	380_G	1.009	0.98
110_P	115_V	1.008	0.98
165_E	316_L	1.008	0.98
150_I	178_V	1.006	0.98
100_G	103_L	1.004	0.98
170_D	324_G	1.003	0.98
41_V	53_V	0.997	0.98
230_Q	234_L	0.994	0.98
98_P	123_T	0.988	0.98
397_Q	403_D	0.981	0.97
445_L	448_I	0.978	0.97
150_I	153_I	0.974	0.97
263_L	298_L	0.971	0.97
252_N	256_V	0.969	0.97
404_Q	407_Q	0.969	0.97
324_G	327_S	0.967	0.97
411_N	415_R	0.967	0.97
452_D	456_F	0.961	0.97
155_A	437_L	0.960	0.97
148_T	154_D	0.958	0.97
324_G	346_S	0.958	0.97
103_L	108_V	0.955	0.97
347_D	390_R	0.954	0.97
198_I	260_Y	0.953	0.97
110_P	234_L	0.951	0.97
145_P	370_A	0.949	0.97
184_L	187_K	0.948	0.97
455_R	458_E	0.938	0.97
159_I	165_E	0.936	0.97
403_D	406_T	0.933	0.97
348_L	421_K	0.932	0.97
384_L	388_S	0.930	0.96
326_I	361_L	0.929	0.96
103_L	222_I	0.929	0.96
428_L	436_I	0.925	0.96
38_I	277_L	0.925	0.96
152_A	420_L	0.921	0.96
294_H	337_I	0.911	0.96
343_F	346_S	0.909	0.96
55_F	86_D	0.902	0.96
382_L	441_T	0.901	0.96
116_D	119_G	0.901	0.96
243_V	258_V	0.899	0.96
250_M	256_V	0.898	0.96
113_Q	120_P	0.895	0.96
408_A	411_N	0.894	0.96
101_E	249_F	0.893	0.96
209_V	213_R	0.892	0.96
235_L	272_E	0.885	0.95
28_V	89_K	0.885	0.95
108_V	121_I	0.883	0.95
193_C	196_V	0.878	0.95
144_E	255_H	0.877	0.95
268_A	286_F	0.873	0.95
95_M	237_L	0.873	0.95
77_G	113_Q	0.866	0.95
158_P	430_V	0.865	0.95
451_A	454_R	0.861	0.95
52_L	91_T	0.861	0.95
255_H	303_K	0.860	0.95
326_I	331_P	0.859	0.94
170_D	332_T	0.858	0.94
83_R	86_D	0.857	0.94
331_P	343_F	0.857	0.94
389_Y	413_G	0.854	0.94
201_K	204_T	0.850	0.94
135_G	138_D	0.846	0.94
294_H	333_N	0.845	0.94
303_K	312_S	0.843	0.94
147_Q	427_P	0.840	0.94
140_K	303_K	0.837	0.94
419_V	436_I	0.836	0.94
301_A	315_A	0.836	0.94
198_I	239_P	0.835	0.94
190_D	255_H	0.834	0.94
340_G	365_R	0.833	0.94
160_G	366_V	0.833	0.94
217_A	221_T	0.833	0.94
292_Y	295_S	0.832	0.94
242_G	258_V	0.831	0.93
367_G	375_M	0.829	0.93
207_G	369_S	0.827	0.93
268_A	322_Q	0.825	0.93
62_M	76_L	0.824	0.93
200_Q	204_T	0.822	0.93
110_P	230_Q	0.821	0.93
217_A	220_Y	0.815	0.93
51_E	154_D	0.813	0.93
38_I	72_G	0.811	0.93
382_L	437_L	0.810	0.93
34_V	129_I	0.807	0.92
378_V	441_T	0.806	0.92
262_D	318_F	0.805	0.92
118_L	121_I	0.804	0.92
51_E	94_I	0.801	0.92
392_L	396_A	0.801	0.92
267_A	294_H	0.801	0.92
373_K	455_R	0.801	0.92
194_V	222_I	0.799	0.92
428_L	433_Q	0.798	0.92
266_Q	297_L	0.797	0.92
184_L	195_Y	0.793	0.92
59_V	77_G	0.792	0.92
53_V	71_V	0.791	0.92
50_G	63_A	0.788	0.92
388_S	392_L	0.786	0.91
372_I	434_V	0.786	0.91
170_D	325_D	0.784	0.91
257_L	316_L	0.783	0.91
450_V	454_R	0.779	0.91
402_L	410_L	0.777	0.91
154_D	433_Q	0.776	0.91
184_L	220_Y	0.774	0.91
102_E	125_K	0.772	0.91
109_N	115_V	0.771	0.91
290_V	293_L	0.771	0.91
368_G	383_R	0.768	0.90
148_T	153_I	0.767	0.90
168_I	331_P	0.766	0.90
350_F	361_L	0.766	0.90
412_R	443_G	0.765	0.90
145_P	158_P	0.763	0.90
256_V	272_E	0.763	0.90
286_F	325_D	0.762	0.90
96_E	128_P	0.762	0.90
74_V	273_L	0.760	0.90
248_E	251_Y	0.759	0.90
51_E	91_T	0.757	0.90
219_D	222_I	0.753	0.90
106_R	120_P	0.752	0.90
31_V	39_A	0.752	0.90
99_V	244_T	0.751	0.89
158_P	371_Q	0.750	0.89
385_D	416_T	0.750	0.89
405_A	414_A	0.749	0.89
454_R	457_E	0.748	0.89
389_Y	417_V	0.748	0.89
115_V	120_P	0.746	0.89
104_I	218_L	0.745	0.89
241_A	244_T	0.743	0.89
371_Q	434_V	0.742	0.89
115_V	225_T	0.741	0.89
366_V	371_Q	0.739	0.89
449_P	458_E	0.739	0.89
157_I	357_I	0.737	0.89
323_A	328_A	0.736	0.89
129_I	241_A	0.735	0.88
147_Q	429_P	0.735	0.88
325_D	332_T	0.734	0.88
240_Y	266_Q	0.731	0.88
378_V	437_L	0.730	0.88
98_P	124_S	0.730	0.88
386_L	416_T	0.730	0.88
158_P	375_M	0.728	0.88
384_L	421_K	0.727	0.88
95_M	154_D	0.726	0.88
184_L	259_V	0.725	0.88
111_L	114_P	0.724	0.88
432_K	435_A	0.722	0.88
156_L	379_S	0.721	0.88
447_D	456_F	0.720	0.87
134_P	304_L	0.718	0.87
231_P	234_L	0.717	0.87
94_I	128_P	0.716	0.87
266_Q	293_L	0.714	0.87
385_D	408_A	0.714	0.87
140_K	310_A	0.713	0.87
375_M	430_V	0.712	0.87
238_A	242_G	0.711	0.87
39_A	55_F	0.711	0.87
260_Y	297_L	0.710	0.87
259_V	318_F	0.709	0.87
200_Q	265_K	0.708	0.87
76_L	234_L	0.707	0.86
108_V	111_L	0.706	0.86
213_R	219_D	0.704	0.86
389_Y	393_E	0.702	0.86
146_L	159_I	0.702	0.86
104_I	254_K	0.701	0.86
170_D	285_A	0.700	0.86
377_K	381_T	0.699	0.86
77_G	231_P	0.699	0.86
153_I	157_I	0.698	0.86
54_E	58_G	0.695	0.86
157_I	363_V	0.694	0.85
381_T	441_T	0.693	0.85
55_F	88_V	0.691	0.85
454_R	458_E	0.689	0.85
393_E	417_V	0.687	0.85
57_N	81_E	0.685	0.85
145_P	366_V	0.685	0.85
448_I	451_A	0.685	0.85
141_S	369_S	0.684	0.85
146_L	187_K	0.679	0.84
448_I	458_E	0.679	0.84
104_I	191_M	0.679	0.84
235_L	247_E	0.677	0.84
304_L	309_G	0.677	0.84
40_R	72_G	0.675	0.84
95_M	241_A	0.675	0.84
205_V	225_T	0.674	0.84
183_I	316_L	0.674	0.84
388_S	405_A	0.674	0.84
226_A	230_Q	0.673	0.84
377_K	380_G	0.673	0.84
343_F	361_L	0.673	0.84
39_A	79_F	0.669	0.83
386_L	390_R	0.669	0.83
401_D	407_Q	0.669	0.83
101_E	124_S	0.668	0.83
375_M	379_S	0.668	0.83
214_K	218_L	0.668	0.83
258_V	301_A	0.667	0.83
116_D	121_I	0.667	0.83
25_V	89_K	0.666	0.83
236_Y	270_Y	0.665	0.83
386_L	413_G	0.664	0.83
453_I	456_F	0.663	0.83
173_T	346_S	0.660	0.82
180_I	225_T	0.660	0.82
122_L	125_K	0.659	0.82
161_R	312_S	0.659	0.82
193_C	221_T	0.657	0.82
171_R	337_I	0.657	0.82
107_I	115_V	0.657	0.82
174_G	261_D	0.657	0.82
406_T	410_L	0.656	0.82
47_C	90_R	0.654	0.82
67_E	72_G	0.654	0.82
283_R	333_N	0.654	0.82
106_R	117_G	0.654	0.82
184_L	188_D	0.654	0.82
52_L	60_L	0.653	0.82
180_I	208_V	0.650	0.82
450_V	455_R	0.648	0.81
327_S	334_V	0.648	0.81
92_G	95_M	0.645	0.81
123_T	248_E	0.644	0.81
452_D	458_E	0.644	0.81
442_K	445_L	0.643	0.81
247_E	250_M	0.643	0.81
385_D	409_K	0.643	0.81
201_K	265_K	0.643	0.81
395_F	398_F	0.641	0.81
66_L	84_E	0.639	0.80
150_I	182_A	0.639	0.80
74_V	277_L	0.638	0.80
332_T	335_I	0.637	0.80
97_V	100_G	0.636	0.80
267_A	330_I	0.636	0.80
449_P	455_R	0.635	0.80
59_V	81_E	0.634	0.80
113_Q	126_T	0.634	0.80
184_L	193_C	0.632	0.80
78_P	81_E	0.631	0.80
142_V	366_V	0.629	0.79
183_I	257_L	0.628	0.79
52_L	95_M	0.628	0.79
245_M	249_F	0.628	0.79
394_A	397_Q	0.626	0.79
359_A	386_L	0.624	0.79
27_D	46_N	0.624	0.79
148_T	301_A	0.624	0.79
243_V	260_Y	0.623	0.79
132_P	296_R	0.622	0.79
126_T	408_A	0.621	0.79
41_V	71_V	0.619	0.78
193_C	259_V	0.619	0.78
167_I	342_I	0.619	0.78
239_P	260_Y	0.616	0.78
345_Q	361_L	0.615	0.78
66_L	72_G	0.614	0.78
56_S	87_E	0.612	0.78
279_R	302_A	0.611	0.77
374_A	378_V	0.611	0.77
447_D	454_R	0.610	0.77
304_L	310_A	0.610	0.77
333_N	400_S	0.609	0.77
155_A	158_P	0.608	0.77
72_G	277_L	0.608	0.77
160_G	365_R	0.607	0.77
59_V	78_P	0.606	0.77
165_E	340_G	0.606	0.77
114_P	118_L	0.605	0.77
195_Y	205_V	0.604	0.77
450_V	453_I	0.602	0.76
268_A	333_N	0.602	0.76
394_A	400_S	0.601	0.76
64_Q	277_L	0.601	0.76
419_V	433_Q	0.601	0.76
442_K	453_I	0.600	0.76
35_G	38_I	0.599	0.76
415_R	418_E	0.598	0.76
114_P	120_P	0.598	0.76
412_R	415_R	0.597	0.76
143_H	303_K	0.597	0.76
175_K	261_D	0.597	0.76
60_L	63_A	0.596	0.76
103_L	123_T	0.595	0.76
128_P	244_T	0.595	0.76
147_Q	433_Q	0.591	0.75
449_P	453_I	0.590	0.75
211_T	214_K	0.590	0.75
451_A	455_R	0.587	0.75
453_I	457_E	0.587	0.75
396_A	406_T	0.584	0.74
360_G	386_L	0.583	0.74
118_L	218_L	0.583	0.74
415_R	450_V	0.582	0.74
430_V	434_V	0.581	0.74
150_I	424_L	0.578	0.73
45_D	56_S	0.578	0.73
117_G	120_P	0.574	0.73
236_Y	273_L	0.574	0.73
244_T	248_E	0.573	0.73
143_H	310_A	0.572	0.73
108_V	112_G	0.571	0.73
65_N	72_G	0.571	0.73
145_P	430_V	0.571	0.73
271_R	330_I	0.571	0.73
152_A	359_A	0.571	0.73
336_S	363_V	0.570	0.72
385_D	441_T	0.569	0.72
27_D	45_D	0.568	0.72
44_L	47_C	0.567	0.72
158_P	363_V	0.566	0.72
76_L	240_Y	0.564	0.72
114_P	121_I	0.564	0.72
110_P	113_Q	0.562	0.71
140_K	304_L	0.562	0.71
58_G	89_K	0.561	0.71
121_I	124_S	0.561	0.71
115_V	230_Q	0.561	0.71
371_Q	379_S	0.561	0.71
372_I	375_M	0.560	0.71
128_P	131_S	0.559	0.71
436_I	439_A	0.558	0.71
147_Q	431_E	0.557	0.71
250_M	313_I	0.557	0.71
43_G	47_C	0.555	0.70
148_T	168_I	0.555	0.70
392_L	397_Q	0.551	0.70
140_K	309_G	0.550	0.70
125_K	128_P	0.548	0.69
153_I	178_V	0.547	0.69
184_L	215_H	0.547	0.69
102_E	119_G	0.547	0.69
185_N	209_V	0.547	0.69
100_G	123_T	0.547	0.69
430_V	433_Q	0.546	0.69
243_V	247_E	0.546	0.69
55_F	60_L	0.545	0.69
263_L	297_L	0.542	0.69
442_K	448_I	0.542	0.69
188_D	255_H	0.541	0.68
373_K	423_D	0.541	0.68
38_I	276_L	0.539	0.68
372_I	438_Y	0.539	0.68
233_P	273_L	0.538	0.68
348_L	365_R	0.538	0.68
77_G	111_L	0.537	0.68
151_K	436_I	0.536	0.68
180_I	259_V	0.536	0.68
240_Y	277_L	0.535	0.68
144_E	310_A	0.535	0.68
110_P	114_P	0.535	0.68
410_L	414_A	0.534	0.68
213_R	221_T	0.534	0.68
235_L	268_A	0.533	0.67
426_K	458_E	0.533	0.67
168_I	338_T	0.533	0.67
124_S	127_R	0.532	0.67
448_I	455_R	0.532	0.67
414_A	417_V	0.532	0.67
453_I	458_E	0.532	0.67
402_L	406_T	0.532	0.67
161_R	292_Y	0.531	0.67
451_A	458_E	0.531	0.67
172_Q	272_E	0.530	0.67
243_V	246_A	0.529	0.67
130_E	240_Y	0.529	0.67
272_E	286_F	0.529	0.67
322_Q	327_S	0.529	0.67
442_K	454_R	0.528	0.67
171_R	335_I	0.528	0.67
190_D	220_Y	0.528	0.67
31_V	34_V	0.527	0.66
154_D	186_Q	0.527	0.66
212_L	217_A	0.526	0.66
266_Q	270_Y	0.525	0.66
211_T	244_T	0.524	0.66
170_D	321_T	0.523	0.66
418_E	454_R	0.523	0.66
224_V	241_A	0.523	0.66
339_D	365_R	0.521	0.66
167_I	316_L	0.519	0.65
385_D	388_S	0.519	0.65
48_M	66_L	0.519	0.65
444_Y	447_D	0.519	0.65
107_I	225_T	0.518	0.65
182_A	185_N	0.518	0.65
216_G	221_T	0.518	0.65
393_E	410_L	0.517	0.65
40_R	65_N	0.516	0.65
176_T	261_D	0.515	0.65
131_S	247_E	0.515	0.65
99_V	103_L	0.514	0.65
449_P	457_E	0.514	0.65
431_E	435_A	0.514	0.65
167_I	391_E	0.514	0.65
381_T	449_P	0.513	0.64
167_I	318_F	0.513	0.64
452_D	457_E	0.513	0.64
434_V	438_Y	0.511	0.64
286_F	394_A	0.511	0.64
231_P	235_L	0.510	0.64
171_R	268_A	0.510	0.64
429_P	435_A	0.510	0.64
53_V	63_A	0.509	0.64
62_M	95_M	0.509	0.64
163_Q	365_R	0.508	0.64
165_E	342_I	0.508	0.64
76_L	111_L	0.508	0.64
298_L	317_P	0.507	0.64
74_V	394_A	0.507	0.64
357_I	448_I	0.506	0.63
91_T	94_I	0.505	0.63
172_Q	399_G	0.504	0.63
171_R	336_S	0.504	0.63
48_M	83_R	0.503	0.63
352_G	384_L	0.502	0.63
108_V	241_A	0.502	0.63
407_Q	411_N	0.501	0.63
102_E	121_I	0.501	0.63
346_S	350_F	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2qe7A	1	0.9442	100	0.055	Contact Map
3oaaA	2	0.9462	100	0.065	Contact Map
1fx0A	1	0.9462	100	0.079	Contact Map
2ck3A	1	0.9502	100	0.084	Contact Map
2r9vA	1	0.9641	100	0.088	Contact Map
3mfyA	1	0.7928	100	0.159	Contact Map
3j9tA	1	0.9402	100	0.166	Contact Map
3vr4A	1	0.9462	100	0.173	Contact Map
3gqbA	1	0.9402	100	0.174	Contact Map
3vr4D	1	0.8625	100	0.177	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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