RADA - BACSU - GREMLIN Contacts

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RADA - DNA repair protein RadA homolog

UniProt:	P37572	Sequences: MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	458 (450)
Sequences:	6330 (3540)
Seq/√Len:	166.9

ECOLI - RADA LON LONH
BACSU - RADA LON1 LON2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
428_A	446_A	6.090	1.00
423_R	441_E	4.357	1.00
428_A	431_L	4.055	1.00
406_V	409_I	3.939	1.00
390_A	422_K	3.833	1.00
423_R	443_I	3.793	1.00
206_K	227_P	3.636	1.00
313_A	377_S	3.620	1.00
60_S	64_S	3.468	1.00
443_I	454_T	3.364	1.00
203_K	207_T	3.132	1.00
413_V	424_M	3.100	1.00
65_I	113_A	2.974	1.00
417_A	439_G	2.969	1.00
375_V	397_V	2.733	1.00
163_I	171_V	2.733	1.00
431_L	444_G	2.652	1.00
413_V	440_I	2.507	1.00
46_R	53_V	2.470	1.00
426_I	444_G	2.433	1.00
226_G	229_L	2.391	1.00
409_I	426_I	2.357	1.00
12_S	29_A	2.323	1.00
232_H	236_T	2.308	1.00
293_A	384_D	2.292	1.00
296_S	393_F	2.233	1.00
446_A	450_E	2.231	1.00
426_I	442_V	2.208	1.00
413_V	442_V	2.203	1.00
372_L	451_A	2.203	1.00
126_S	134_T	2.182	1.00
46_R	50_S	2.176	1.00
50_S	53_V	2.162	1.00
425_I	445_V	2.161	1.00
172_V	175_S	2.152	1.00
376_I	387_P	2.150	1.00
425_I	454_T	2.098	1.00
270_R	273_G	2.071	1.00
445_V	451_A	2.068	1.00
375_V	448_V	2.055	1.00
392_C	421_F	2.026	1.00
45_R	53_V	1.999	1.00
376_I	393_F	1.994	1.00
172_V	177_Q	1.982	1.00
423_R	454_T	1.972	1.00
391_D	423_R	1.951	1.00
393_F	425_I	1.942	1.00
434_W	444_G	1.922	1.00
298_T	373_A	1.914	1.00
379_A	452_L	1.860	1.00
260_S	276_E	1.849	1.00
403_V	445_V	1.841	1.00
376_I	451_A	1.837	1.00
172_V	176_I	1.835	1.00
171_V	175_S	1.832	1.00
315_I	381_S	1.823	1.00
74_K	81_N	1.819	1.00
198_T	235_D	1.809	1.00
11_Q	34_V	1.808	1.00
338_L	375_V	1.805	1.00
450_E	453_R	1.798	1.00
445_V	450_E	1.791	1.00
35_E	39_K	1.772	1.00
23_K	28_G	1.772	1.00
108_L	215_V	1.752	1.00
323_P	335_V	1.748	1.00
217_H	251_L	1.743	1.00
425_I	451_A	1.730	1.00
171_V	177_Q	1.728	1.00
46_R	52_S	1.722	1.00
58_K	62_I	1.715	1.00
121_S	169_S	1.697	1.00
66_E	113_A	1.690	1.00
345_R	449_A	1.684	1.00
17_S	33_M	1.679	1.00
29_A	32_T	1.669	1.00
149_H	166_M	1.662	1.00
175_S	179_V	1.658	1.00
45_R	50_S	1.651	1.00
93_L	202_M	1.640	1.00
329_G	332_H	1.639	1.00
21_M	33_M	1.633	1.00
120_N	169_S	1.629	1.00
174_D	177_Q	1.625	1.00
320_F	354_D	1.621	1.00
176_I	179_V	1.612	1.00
15_Y	25_P	1.603	1.00
202_M	231_E	1.596	1.00
213_F	251_L	1.588	1.00
61_P	64_S	1.579	1.00
175_S	180_Y	1.576	1.00
394_I	409_I	1.574	1.00
311_I	373_A	1.574	1.00
133_Q	150_V	1.565	1.00
236_T	281_S	1.563	1.00
332_H	336_S	1.556	1.00
388_N	423_R	1.550	1.00
7_K	16_E	1.546	1.00
175_S	183_D	1.538	1.00
318_T	322_N	1.536	1.00
257_R	267_F	1.529	1.00
163_I	204_I	1.528	1.00
155_D	182_S	1.521	1.00
44_N	53_V	1.520	1.00
45_R	52_S	1.513	1.00
273_G	277_V	1.509	1.00
253_A	269_M	1.501	1.00
176_I	183_D	1.500	1.00
350_L	382_F	1.500	1.00
232_H	281_S	1.499	1.00
224_I	254_V	1.492	1.00
43_A	46_R	1.487	1.00
232_H	274_L	1.474	1.00
339_M	355_A	1.474	1.00
15_Y	33_M	1.467	1.00
49_F	53_V	1.467	1.00
135_K	139_D	1.446	1.00
61_P	65_I	1.433	1.00
17_S	25_P	1.432	1.00
171_V	176_I	1.424	1.00
447_N	450_E	1.418	1.00
171_V	212_I	1.412	1.00
409_I	413_V	1.401	1.00
392_C	424_M	1.401	1.00
308_L	419_L	1.399	1.00
175_S	178_T	1.399	1.00
357_L	374_I	1.397	1.00
9_I	16_E	1.391	1.00
204_I	210_I	1.391	1.00
437_P	442_V	1.388	1.00
424_M	440_I	1.373	1.00
319_S	351_Q	1.368	1.00
249_R	252_R	1.366	1.00
233_M	253_A	1.365	1.00
257_R	261_T	1.359	1.00
296_S	387_P	1.359	1.00
185_T	190_S	1.356	1.00
232_H	271_E	1.336	1.00
37_M	42_P	1.333	1.00
161_S	164_Q	1.329	1.00
256_N	277_V	1.326	1.00
335_V	357_L	1.324	1.00
203_K	206_K	1.319	1.00
284_F	429_A	1.304	1.00
313_A	381_S	1.286	1.00
210_I	250_I	1.282	1.00
42_P	50_S	1.282	1.00
210_I	230_L	1.282	1.00
171_V	174_D	1.281	1.00
372_L	403_V	1.275	1.00
10_C	17_S	1.260	1.00
172_V	179_V	1.260	1.00
37_M	50_S	1.260	1.00
50_S	54_Q	1.255	1.00
227_P	231_E	1.253	1.00
222_G	225_A	1.249	1.00
171_V	180_Y	1.247	1.00
394_I	406_V	1.244	1.00
177_Q	180_Y	1.242	1.00
220_K	223_S	1.238	1.00
37_M	54_Q	1.237	1.00
225_A	266_I	1.236	1.00
202_M	227_P	1.222	1.00
293_A	386_P	1.221	1.00
15_Y	26_G	1.218	1.00
70_E	132_K	1.214	1.00
76_Q	81_N	1.213	1.00
171_V	179_V	1.210	1.00
179_V	190_S	1.209	1.00
14_G	17_S	1.208	1.00
107_L	193_Q	1.207	1.00
206_K	230_L	1.206	1.00
173_V	177_Q	1.205	1.00
72_R	252_R	1.180	1.00
177_Q	183_D	1.172	1.00
376_I	452_L	1.153	1.00
174_D	178_T	1.151	1.00
315_I	353_Q	1.151	1.00
341_V	448_V	1.145	1.00
291_G	389_P	1.144	1.00
231_E	235_D	1.143	1.00
121_S	147_S	1.133	1.00
160_S	204_I	1.126	1.00
342_L	379_A	1.124	1.00
372_L	445_V	1.121	1.00
172_V	183_D	1.116	1.00
226_G	268_E	1.111	1.00
260_S	277_V	1.110	1.00
228_R	231_E	1.108	1.00
316_S	340_A	1.106	1.00
229_L	274_L	1.103	1.00
176_I	180_Y	1.103	1.00
317_P	353_Q	1.101	1.00
174_D	179_V	1.100	1.00
172_V	180_Y	1.097	1.00
204_I	208_K	1.096	1.00
59_P	62_I	1.095	1.00
63_T	146_P	1.092	1.00
341_V	345_R	1.091	1.00
316_S	343_E	1.089	1.00
297_I	308_L	1.088	1.00
128_E	162_A	1.088	1.00
273_G	276_E	1.086	1.00
44_N	50_S	1.085	1.00
225_A	268_E	1.081	1.00
15_Y	21_M	1.080	1.00
58_K	61_P	1.080	1.00
78_G	259_G	1.078	1.00
198_T	231_E	1.065	0.99
213_F	247_T	1.065	0.99
44_N	52_S	1.064	0.99
388_N	391_D	1.060	0.99
224_I	257_R	1.053	0.99
164_Q	208_K	1.041	0.99
173_V	176_I	1.041	0.99
179_V	183_D	1.037	0.99
55_T	58_K	1.035	0.99
62_I	65_I	1.024	0.99
413_V	426_I	1.023	0.99
315_I	382_F	1.021	0.99
279_N	282_E	1.013	0.99
90_K	216_G	1.011	0.99
359_V	374_I	1.010	0.99
175_S	182_S	1.000	0.99
75_T	256_N	1.000	0.99
245_H	249_R	0.999	0.99
96_I	111_V	0.998	0.99
326_M	329_G	0.994	0.99
327_A	359_V	0.990	0.99
212_I	247_T	0.990	0.99
78_G	276_E	0.989	0.99
290_A	293_A	0.983	0.99
34_V	51_H	0.981	0.99
406_V	426_I	0.970	0.99
173_V	179_V	0.967	0.99
177_Q	182_S	0.962	0.99
239_Y	254_V	0.961	0.99
422_K	439_G	0.960	0.99
151_L	162_A	0.959	0.99
348_L	379_A	0.958	0.99
112_S	172_V	0.958	0.99
229_L	271_E	0.956	0.99
324_R	356_Y	0.953	0.99
406_V	413_V	0.950	0.99
11_Q	36_E	0.947	0.99
17_S	21_M	0.947	0.99
285_L	307_I	0.946	0.99
9_I	36_E	0.945	0.99
448_V	451_A	0.942	0.99
314_L	340_A	0.941	0.99
99_D	239_Y	0.939	0.99
160_S	167_N	0.935	0.99
176_I	182_S	0.934	0.99
249_R	282_E	0.923	0.99
62_I	113_A	0.922	0.99
60_S	259_G	0.916	0.98
42_P	46_R	0.916	0.98
296_S	377_S	0.915	0.98
89_V	92_S	0.914	0.98
121_S	149_H	0.914	0.98
176_I	181_Q	0.914	0.98
391_D	425_I	0.912	0.98
422_K	441_E	0.910	0.98
292_S	402_E	0.909	0.98
272_E	275_T	0.907	0.98
31_N	34_V	0.904	0.98
178_T	181_Q	0.904	0.98
431_L	435_T	0.901	0.98
25_P	33_M	0.897	0.98
162_A	166_M	0.897	0.98
295_S	310_E	0.897	0.98
398_G	402_E	0.896	0.98
80_F	84_L	0.895	0.98
79_E	259_G	0.895	0.98
280_P	435_T	0.892	0.98
64_S	67_T	0.883	0.98
156_M	197_C	0.876	0.98
214_I	221_E	0.876	0.98
228_R	271_E	0.874	0.98
21_M	25_P	0.873	0.98
214_I	217_H	0.873	0.98
311_I	359_V	0.873	0.98
409_I	430_N	0.872	0.98
185_T	192_S	0.870	0.98
176_I	197_C	0.870	0.98
177_Q	181_Q	0.869	0.98
448_V	452_L	0.865	0.98
88_V	213_F	0.865	0.98
409_I	444_G	0.865	0.98
63_T	67_T	0.864	0.98
257_R	277_V	0.863	0.98
11_Q	32_T	0.863	0.98
392_C	416_A	0.862	0.98
180_Y	183_D	0.861	0.98
156_M	160_S	0.856	0.98
31_N	35_E	0.856	0.98
55_T	63_T	0.855	0.98
51_H	54_Q	0.854	0.98
361_G	398_G	0.854	0.98
330_I	374_I	0.851	0.97
40_K	50_S	0.847	0.97
57_Q	61_P	0.846	0.97
295_S	402_E	0.846	0.97
115_L	170_F	0.841	0.97
287_E	429_A	0.835	0.97
32_T	52_S	0.831	0.97
172_V	178_T	0.831	0.97
297_I	310_E	0.826	0.97
131_V	152_S	0.822	0.97
318_T	321_G	0.821	0.97
393_F	451_A	0.816	0.97
245_H	248_F	0.815	0.97
13_C	19_K	0.814	0.97
139_D	144_N	0.813	0.97
391_D	454_T	0.813	0.97
57_Q	60_S	0.811	0.97
10_C	14_G	0.811	0.97
117_G	145_N	0.808	0.97
174_D	180_Y	0.805	0.96
40_K	43_A	0.805	0.96
234_V	237_V	0.805	0.96
128_E	131_V	0.804	0.96
247_T	251_L	0.804	0.96
126_S	152_S	0.802	0.96
288_R	389_P	0.798	0.96
37_M	51_H	0.794	0.96
175_S	181_Q	0.792	0.96
134_T	150_V	0.792	0.96
321_G	354_D	0.791	0.96
237_V	240_F	0.791	0.96
233_M	278_L	0.785	0.96
330_I	335_V	0.784	0.96
233_M	250_I	0.783	0.96
256_N	259_G	0.783	0.96
299_A	392_C	0.782	0.96
60_S	63_T	0.782	0.96
138_A	165_E	0.781	0.96
43_A	53_V	0.779	0.96
37_M	40_K	0.779	0.96
298_T	394_I	0.778	0.96
428_A	450_E	0.777	0.96
119_S	123_L	0.776	0.96
27_C	30_W	0.776	0.96
7_K	36_E	0.776	0.96
394_I	424_M	0.775	0.96
300_S	309_V	0.772	0.96
60_S	65_I	0.769	0.95
46_R	49_F	0.767	0.95
324_R	333_N	0.767	0.95
159_I	179_V	0.764	0.95
171_V	178_T	0.762	0.95
226_G	273_G	0.762	0.95
39_K	44_N	0.761	0.95
235_D	285_L	0.761	0.95
343_E	350_L	0.758	0.95
41_A	44_N	0.756	0.95
45_R	51_H	0.755	0.95
335_V	374_I	0.754	0.95
373_A	393_F	0.752	0.95
408_R	411_Q	0.750	0.95
44_N	51_H	0.749	0.95
431_L	434_W	0.749	0.95
44_N	54_Q	0.745	0.95
398_G	404_R	0.745	0.95
353_Q	382_F	0.745	0.95
202_M	234_V	0.742	0.94
184_I	187_A	0.741	0.94
89_V	217_H	0.741	0.94
127_G	133_Q	0.739	0.94
184_I	192_S	0.735	0.94
301_M	411_Q	0.734	0.94
273_G	280_P	0.733	0.94
269_M	274_L	0.733	0.94
24_C	226_G	0.731	0.94
197_C	410_E	0.729	0.94
445_V	454_T	0.729	0.94
24_C	27_C	0.728	0.94
224_I	253_A	0.727	0.94
240_F	274_L	0.725	0.94
73_V	96_I	0.725	0.94
63_T	66_E	0.724	0.94
269_M	273_G	0.722	0.94
84_L	89_V	0.721	0.94
317_P	352_N	0.721	0.94
49_F	54_Q	0.721	0.94
56_V	59_P	0.720	0.94
449_A	453_R	0.720	0.94
338_L	397_V	0.719	0.94
346_V	379_A	0.719	0.94
428_A	444_G	0.718	0.93
46_R	54_Q	0.716	0.93
127_G	178_T	0.708	0.93
402_E	446_A	0.707	0.93
261_T	267_F	0.706	0.93
405_R	429_A	0.706	0.93
125_I	159_I	0.705	0.93
67_T	139_D	0.704	0.93
222_G	265_G	0.703	0.93
301_M	408_R	0.702	0.93
172_V	182_S	0.701	0.93
112_S	122_V	0.700	0.93
201_L	212_I	0.698	0.93
214_I	224_I	0.694	0.92
299_A	424_M	0.693	0.92
89_V	109_L	0.691	0.92
355_A	378_I	0.691	0.92
46_R	51_H	0.691	0.92
213_F	250_I	0.690	0.92
379_A	451_A	0.689	0.92
292_S	400_T	0.687	0.92
79_E	82_R	0.687	0.92
3_K	7_K	0.687	0.92
260_S	263_E	0.687	0.92
372_L	448_V	0.687	0.92
121_S	167_N	0.685	0.92
160_S	164_Q	0.685	0.92
192_S	195_R	0.684	0.92
251_L	255_K	0.679	0.91
76_Q	79_E	0.679	0.91
67_T	74_K	0.678	0.91
146_P	149_H	0.676	0.91
37_M	41_A	0.671	0.91
55_T	64_S	0.670	0.91
11_Q	167_N	0.668	0.91
257_R	273_G	0.667	0.91
326_M	361_G	0.666	0.91
228_R	232_H	0.663	0.90
72_R	75_T	0.663	0.90
74_K	77_L	0.663	0.90
16_E	19_K	0.663	0.90
395_G	427_P	0.663	0.90
417_A	437_P	0.662	0.90
83_V	265_G	0.661	0.90
252_R	259_G	0.661	0.90
403_V	448_V	0.660	0.90
391_D	443_I	0.660	0.90
343_E	354_D	0.659	0.90
153_E	158_Y	0.659	0.90
297_I	421_F	0.658	0.90
58_K	63_T	0.653	0.90
367_E	412_R	0.651	0.90
226_G	270_R	0.651	0.90
190_S	193_Q	0.651	0.90
171_V	181_Q	0.651	0.90
85_G	262_N	0.650	0.90
267_F	273_G	0.650	0.90
55_T	67_T	0.649	0.90
214_I	254_V	0.647	0.89
156_M	179_V	0.647	0.89
75_T	259_G	0.645	0.89
75_T	81_N	0.640	0.89
170_F	213_F	0.640	0.89
372_L	375_V	0.639	0.89
111_V	173_V	0.639	0.89
7_K	38_I	0.636	0.89
232_H	235_D	0.635	0.89
323_P	332_H	0.635	0.89
413_V	434_W	0.633	0.88
56_V	82_R	0.633	0.88
124_Y	134_T	0.633	0.88
8_F	15_Y	0.632	0.88
225_A	228_R	0.632	0.88
213_F	217_H	0.632	0.88
434_W	442_V	0.631	0.88
121_S	166_M	0.631	0.88
227_P	230_L	0.630	0.88
205_A	230_L	0.630	0.88
301_M	415_E	0.628	0.88
370_I	408_R	0.628	0.88
426_I	434_W	0.627	0.88
69_E	76_Q	0.625	0.88
226_G	232_H	0.624	0.88
119_S	169_S	0.624	0.88
62_I	66_E	0.622	0.87
296_S	373_A	0.621	0.87
32_T	36_E	0.620	0.87
237_V	243_E	0.617	0.87
264_M	267_F	0.614	0.87
248_F	418_K	0.613	0.87
102_I	199_A	0.613	0.87
74_K	78_G	0.610	0.86
58_K	64_S	0.610	0.86
222_G	231_E	0.610	0.86
66_E	70_E	0.610	0.86
152_S	156_M	0.609	0.86
59_P	81_N	0.606	0.86
55_T	60_S	0.605	0.86
69_E	74_K	0.605	0.86
406_V	430_N	0.604	0.86
269_M	277_V	0.603	0.86
296_S	376_I	0.601	0.86
300_S	365_L	0.600	0.86
162_A	165_E	0.598	0.85
67_T	132_K	0.597	0.85
433_G	436_K	0.597	0.85
155_D	158_Y	0.596	0.85
331_D	364_K	0.596	0.85
49_F	52_S	0.596	0.85
127_G	162_A	0.596	0.85
56_V	67_T	0.596	0.85
71_P	75_T	0.595	0.85
42_P	45_R	0.595	0.85
390_A	423_R	0.595	0.85
141_L	144_N	0.594	0.85
274_L	277_V	0.592	0.85
172_V	181_Q	0.591	0.85
121_S	188_P	0.591	0.85
214_I	222_G	0.590	0.85
288_R	419_L	0.589	0.85
79_E	83_V	0.589	0.85
28_G	31_N	0.588	0.84
227_P	232_H	0.587	0.84
139_D	143_I	0.587	0.84
222_G	252_R	0.587	0.84
228_R	235_D	0.586	0.84
160_S	200_E	0.584	0.84
395_G	403_V	0.584	0.84
95_L	259_G	0.583	0.84
97_G	185_T	0.583	0.84
397_V	448_V	0.582	0.84
302_E	305_R	0.581	0.84
4_T	37_M	0.581	0.84
181_Q	185_T	0.580	0.84
171_V	183_D	0.580	0.84
59_P	162_A	0.580	0.84
373_A	451_A	0.578	0.83
254_V	258_F	0.578	0.83
222_G	232_H	0.578	0.83
310_E	381_S	0.577	0.83
24_C	28_G	0.577	0.83
232_H	273_G	0.577	0.83
75_T	88_V	0.577	0.83
257_R	262_N	0.577	0.83
37_M	43_A	0.576	0.83
270_R	275_T	0.575	0.83
67_T	70_E	0.572	0.83
213_F	216_G	0.571	0.83
202_M	206_K	0.570	0.83
333_N	356_Y	0.570	0.83
14_G	18_P	0.570	0.83
289_S	400_T	0.570	0.83
299_A	308_L	0.568	0.82
27_C	35_E	0.567	0.82
112_S	366_D	0.566	0.82
94_V	170_F	0.565	0.82
361_G	364_K	0.565	0.82
205_A	212_I	0.565	0.82
174_D	183_D	0.564	0.82
58_K	65_I	0.561	0.82
32_T	35_E	0.561	0.82
213_F	254_V	0.561	0.82
337_L	340_A	0.557	0.81
99_D	104_K	0.557	0.81
173_V	182_S	0.557	0.81
63_T	76_Q	0.557	0.81
232_H	314_L	0.556	0.81
60_S	78_G	0.553	0.81
171_V	182_S	0.553	0.81
185_T	196_E	0.553	0.81
339_M	350_L	0.553	0.81
410_E	414_K	0.553	0.81
257_R	269_M	0.552	0.81
316_S	344_K	0.551	0.80
275_T	435_T	0.550	0.80
67_T	76_Q	0.550	0.80
8_F	11_Q	0.549	0.80
88_V	211_P	0.548	0.80
450_E	454_T	0.546	0.80
285_L	419_L	0.545	0.80
330_I	357_L	0.544	0.80
173_V	180_Y	0.544	0.80
394_I	426_I	0.543	0.79
373_A	415_E	0.543	0.79
348_L	383_R	0.543	0.79
40_K	54_Q	0.543	0.79
289_S	292_S	0.542	0.79
45_R	49_F	0.541	0.79
258_F	262_N	0.540	0.79
345_R	384_D	0.539	0.79
226_G	276_E	0.539	0.79
425_I	443_I	0.539	0.79
226_G	235_D	0.539	0.79
27_C	310_E	0.539	0.79
149_H	162_A	0.538	0.79
137_R	140_R	0.538	0.79
306_P	394_I	0.537	0.79
136_L	139_D	0.536	0.79
39_K	45_R	0.535	0.78
201_L	204_I	0.535	0.78
281_S	285_L	0.535	0.78
434_W	437_P	0.535	0.78
321_G	351_Q	0.534	0.78
33_M	36_E	0.533	0.78
153_E	159_I	0.533	0.78
76_Q	83_V	0.533	0.78
34_V	38_I	0.532	0.78
196_E	203_K	0.532	0.78
156_M	201_L	0.532	0.78
376_I	391_D	0.532	0.78
413_V	437_P	0.532	0.78
275_T	281_S	0.531	0.78
30_W	34_V	0.531	0.78
344_K	381_S	0.531	0.78
157_E	181_Q	0.531	0.78
235_D	286_E	0.530	0.78
63_T	69_E	0.530	0.78
84_L	87_G	0.529	0.78
60_S	75_T	0.529	0.78
379_A	383_R	0.529	0.78
320_F	324_R	0.528	0.78
41_A	46_R	0.528	0.78
225_A	235_D	0.528	0.78
27_C	31_N	0.527	0.77
299_A	306_P	0.527	0.77
64_S	69_E	0.526	0.77
226_G	272_E	0.526	0.77
56_V	60_S	0.526	0.77
296_S	299_A	0.523	0.77
286_E	405_R	0.523	0.77
309_V	365_L	0.523	0.77
222_G	257_R	0.523	0.77
243_E	246_H	0.522	0.77
86_G	89_V	0.522	0.77
56_V	63_T	0.521	0.77
228_R	268_E	0.521	0.77
402_E	447_N	0.521	0.77
226_G	231_E	0.521	0.77
78_G	81_N	0.520	0.76
413_V	417_A	0.520	0.76
7_K	21_M	0.520	0.76
416_A	424_M	0.520	0.76
233_M	277_V	0.519	0.76
27_C	303_G	0.519	0.76
228_R	276_E	0.518	0.76
73_V	76_Q	0.517	0.76
167_N	208_K	0.516	0.76
67_T	403_V	0.516	0.76
280_P	432_D	0.515	0.76
112_S	148_L	0.515	0.76
60_S	67_T	0.515	0.76
249_R	310_E	0.514	0.76
57_Q	63_T	0.514	0.76
240_F	243_E	0.514	0.76
3_K	224_I	0.514	0.76
191_V	194_V	0.513	0.76
214_I	219_T	0.513	0.76
60_S	66_E	0.513	0.76
55_T	59_P	0.512	0.75
206_K	222_G	0.512	0.75
223_S	261_T	0.511	0.75
189_G	195_R	0.511	0.75
257_R	260_S	0.510	0.75
125_I	151_L	0.509	0.75
4_T	39_K	0.509	0.75
56_V	65_I	0.508	0.75
131_V	150_V	0.506	0.75
179_V	185_T	0.506	0.75
321_G	382_F	0.506	0.75
30_W	257_R	0.506	0.75
227_P	263_E	0.506	0.75
13_C	20_W	0.505	0.74
112_S	200_E	0.504	0.74
290_A	446_A	0.504	0.74
225_A	263_E	0.503	0.74
341_V	397_V	0.503	0.74
36_E	40_K	0.503	0.74
108_L	213_F	0.502	0.74
220_K	267_F	0.502	0.74
18_P	23_K	0.501	0.74
417_A	440_I	0.501	0.74
375_V	452_L	0.501	0.74
199_A	203_K	0.501	0.74
96_I	213_F	0.501	0.74
226_G	267_F	0.500	0.74
220_K	273_G	0.500	0.74

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3m6aA	3	0.9454	100	0.558	Contact Map
3k1jA	4	0.8821	100	0.578	Contact Map
4fwgA	3	0.7991	100	0.66	Contact Map
1xhkA	2	0.3734	100	0.715	Contact Map
1z0wA	3	0.3821	100	0.717	Contact Map
3wu4A	3	0.3712	100	0.739	Contact Map
2x36A	3	0.3799	100	0.742	Contact Map
1n0wA	1	0.4083	99.9	0.837	Contact Map
2dr3A	3	0.4629	99.9	0.842	Contact Map
1tf7A	3	0.607	99.8	0.845	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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