GREMLIN Database
YYAE - Probable oxidoreductase YyaE
UniProt: P37519 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 667 (636)
Sequences: 9787 (5965)
Seq/√Len: 236.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
63_Y74_R5.5711.00
596_L615_V4.4151.00
82_D461_R4.2601.00
603_V665_K3.9881.00
449_K457_E3.6281.00
603_V610_S3.3551.00
230_M276_G3.3241.00
258_E268_M3.1841.00
87_K90_E3.1801.00
590_I624_K3.1681.00
222_A260_F3.1521.00
557_Y594_Q3.1301.00
453_W457_E3.1111.00
440_K443_E2.9801.00
235_E239_S2.9401.00
589_D623_A2.9271.00
226_V230_M2.9001.00
225_K229_E2.8951.00
83_E412_Y2.8021.00
398_A410_C2.7351.00
166_W220_A2.7311.00
224_L248_V2.7231.00
76_S79_Q2.6851.00
261_I268_M2.6751.00
605_F665_K2.6681.00
84_I412_Y2.6511.00
81_L461_R2.6241.00
243_V517_S2.6141.00
605_F663_G2.6111.00
90_E94_T2.5601.00
190_T277_L2.5531.00
517_S521_E2.5071.00
268_M272_E2.4971.00
224_L310_A2.4901.00
207_R273_Y2.4861.00
270_E273_Y2.4801.00
91_I99_A2.4741.00
606_N662_V2.4731.00
219_L264_T2.4691.00
267_S270_E2.4541.00
193_V205_A2.4461.00
161_K282_P2.4361.00
591_A617_V2.4331.00
63_Y447_E2.4171.00
602_V615_V2.4041.00
586_I664_L2.4011.00
66_K83_E2.4001.00
75_I412_Y2.3981.00
256_S259_E2.3771.00
231_G235_E2.3441.00
586_I615_V2.3361.00
81_L457_E2.3341.00
581_H614_K2.3231.00
605_F610_S2.3121.00
593_G623_A2.3081.00
233_T238_I2.3011.00
66_K412_Y2.2891.00
66_K75_I2.2731.00
228_I245_F2.2281.00
159_N317_K2.2151.00
88_L368_M2.1401.00
367_E394_P2.1281.00
236_T240_E2.1171.00
382_N646_D2.0991.00
594_Q663_G2.0961.00
598_D617_V2.0901.00
162_H277_L2.0811.00
160_S163_V2.0701.00
84_I397_V2.0601.00
209_I274_L2.0501.00
457_E461_R2.0301.00
584_V626_I2.0251.00
596_L602_V1.9771.00
83_E87_K1.9761.00
273_Y277_L1.9471.00
601_E612_K1.9231.00
91_I368_M1.9101.00
209_I266_T1.9081.00
445_Q448_A1.9031.00
603_V612_K1.8991.00
584_V604_I1.8971.00
584_V602_V1.8971.00
219_L271_L1.8831.00
184_V189_A1.8801.00
74_R447_E1.8701.00
162_H192_T1.8641.00
75_I83_E1.8611.00
207_R270_E1.8501.00
489_T492_R1.8481.00
370_I399_I1.8331.00
225_K257_L1.8321.00
20_L35_P1.8151.00
584_V628_I1.8101.00
598_D616_K1.8071.00
233_T245_F1.8051.00
613_G628_I1.8021.00
557_Y626_I1.7891.00
228_I249_K1.7871.00
66_K73_V1.7861.00
586_I626_I1.7711.00
316_I319_G1.7641.00
185_K206_D1.7631.00
589_D592_A1.7451.00
403_M407_A1.7441.00
597_Q600_D1.7331.00
215_M263_K1.7131.00
626_I662_V1.6961.00
82_D86_D1.6851.00
226_V272_E1.6621.00
230_M272_E1.6621.00
278_Y283_V1.6591.00
232_R279_A1.6461.00
207_R277_L1.6451.00
423_E440_K1.6421.00
226_V276_G1.6391.00
161_K281_G1.6361.00
492_R496_K1.6201.00
194_I219_L1.6191.00
276_G280_D1.6111.00
601_E614_K1.6061.00
278_Y311_S1.6051.00
393_V396_T1.5971.00
62_R446_G1.5971.00
250_E253_K1.5931.00
99_A367_E1.5911.00
261_I267_S1.5811.00
260_F271_L1.5801.00
228_I252_L1.5751.00
457_E460_K1.5661.00
65_M413_V1.5621.00
238_I245_F1.5521.00
18_G37_H1.5391.00
226_V257_L1.5371.00
562_I627_N1.5331.00
227_L279_A1.5261.00
261_I271_L1.5201.00
227_L233_T1.5131.00
75_I79_Q1.5121.00
232_R276_G1.5051.00
219_L274_L1.4871.00
244_G247_D1.4781.00
242_S522_F1.4771.00
585_D618_M1.4741.00
164_V274_L1.4621.00
164_V194_I1.4621.00
395_M412_Y1.4561.00
258_E272_E1.4551.00
84_I414_L1.4471.00
218_W263_K1.4421.00
86_D90_E1.4411.00
79_Q83_E1.4381.00
89_R93_E1.4381.00
417_A450_S1.4371.00
22_T32_D1.4271.00
387_R391_E1.4261.00
247_D250_E1.4201.00
101_L366_I1.3981.00
243_V521_E1.3971.00
53_T575_F1.3941.00
504_K508_W1.3841.00
229_E253_K1.3791.00
611_M628_I1.3731.00
193_V202_A1.3711.00
557_Y590_I1.3691.00
473_Q477_E1.3691.00
64_P77_W1.3621.00
65_M74_R1.3581.00
291_M304_I1.3571.00
388_Q391_E1.3561.00
162_H274_L1.3521.00
88_L397_V1.3471.00
215_M264_T1.3451.00
95_S367_E1.3431.00
7_S21_V1.3431.00
226_V229_E1.3431.00
259_E262_V1.3341.00
207_R274_L1.3321.00
588_P619_K1.3291.00
223_V278_Y1.3291.00
102_H120_F1.3261.00
183_Q186_K1.3211.00
398_A407_A1.3191.00
223_V274_L1.3181.00
236_T239_S1.3121.00
515_T521_E1.3111.00
401_S418_T1.3111.00
310_A522_F1.3091.00
552_A607_D1.3081.00
371_V396_T1.3071.00
403_M413_V1.3071.00
362_A385_K1.2991.00
245_F249_K1.2971.00
471_S474_E1.2961.00
594_Q664_L1.2921.00
196_P208_Y1.2871.00
353_T356_E1.2861.00
449_K453_W1.2851.00
209_I270_E1.2751.00
21_V28_V1.2721.00
474_E477_E1.2681.00
229_E272_E1.2651.00
83_E395_M1.2631.00
198_F203_K1.2601.00
557_Y663_G1.2561.00
439_K494_K1.2501.00
587_S623_A1.2431.00
223_V275_A1.2391.00
265_E622_H1.2341.00
450_S453_W1.2291.00
226_V232_R1.2281.00
584_V613_G1.2231.00
313_N319_G1.2231.00
399_I454_I1.2201.00
255_V263_K1.2191.00
460_K465_G1.2181.00
211_V266_T1.2171.00
255_V259_E1.2111.00
21_V31_V1.2101.00
477_E480_L1.2021.00
583_Q616_K1.2011.00
255_V260_F1.1971.00
85_A461_R1.1961.00
81_L449_K1.1941.00
399_I416_T1.1931.00
68_Q73_V1.1891.00
490_L494_K1.1871.00
28_V55_T1.1841.00
89_R92_K1.1831.00
211_V215_M1.1781.00
385_K388_Q1.1731.00
628_I640_V1.1731.00
225_K253_K1.1711.00
20_L34_D1.1661.00
92_K100_V1.1611.00
20_L32_D1.1581.00
156_D159_N1.1551.00
382_N385_K1.1521.00
359_L385_K1.1491.00
224_L252_L1.1481.00
585_D616_K1.1471.00
226_V271_L1.1471.00
372_T455_W1.1441.00
254_T259_E1.1421.00
228_I233_T1.1421.00
476_L480_L1.1411.00
491_E495_E1.1381.00
79_Q412_Y1.1341.00
554_K663_G1.1331.00
100_V368_M1.1331.00
141_A301_I1.1311.00
453_W460_K1.1311.00
235_E249_K1.1291.00
618_M621_A1.1281.00
368_M395_M1.1261.00
140_E651_N1.1231.00
223_V227_L1.1181.00
220_A304_I1.1131.00
232_R280_D1.1101.00
190_T206_D1.1081.00
192_T274_L1.1071.00
163_V181_L1.1071.00
554_K607_D1.1051.00
417_A448_A1.1021.00
269_E272_E1.0971.00
162_H281_G1.0951.00
238_I522_F1.0941.00
245_F310_A1.0881.00
162_H283_V1.0811.00
198_F620_Q1.0751.00
388_Q392_K1.0741.00
227_L311_S1.0701.00
164_V223_V1.0701.00
165_V168_R1.0701.00
67_K72_F1.0691.00
87_K394_P1.0671.00
222_A271_L1.0541.00
163_V189_A1.0531.00
203_K620_Q1.0481.00
223_V307_L1.0451.00
157_I284_S1.0451.00
261_I264_T1.0441.00
92_K97_T1.0421.00
414_L454_I1.0401.00
163_V184_V1.0391.00
27_K56_N1.0381.00
586_I596_L1.0371.00
242_S309_A1.0371.00
120_F126_V1.0371.00
362_A388_Q1.0361.00
166_W194_I1.0331.00
368_M397_V1.0321.00
91_I395_M1.0311.00
424_D427_Y1.0261.00
377_L383_T1.0231.00
246_D249_K1.0221.00
352_M360_T1.0201.00
91_I394_P1.0171.00
604_I628_I1.0151.00
285_T308_V1.0121.00
559_L662_V1.0111.00
260_F264_T1.0101.00
355_A358_V1.0021.00
357_E361_A1.0001.00
161_K187_K0.9991.00
356_E360_T0.9971.00
68_Q71_E0.9971.00
261_I269_E0.9971.00
158_Y180_H0.9961.00
371_V406_T0.9921.00
220_A303_W0.9901.00
278_Y285_T0.9881.00
31_V52_E0.9871.00
587_S621_A0.9861.00
88_L462_L0.9861.00
309_A520_F0.9851.00
356_E359_L0.9791.00
560_L625_T0.9761.00
194_I209_I0.9751.00
370_I458_L0.9731.00
490_L493_L0.9721.00
33_G42_G0.9711.00
213_P625_T0.9691.00
248_V310_A0.9691.00
556_P663_G0.9691.00
22_T30_K0.9671.00
55_T442_V0.9661.00
194_I274_L0.9661.00
604_I662_V0.9651.00
248_V252_L0.9641.00
437_Y494_K0.9621.00
273_Y276_G0.9611.00
87_K91_I0.9591.00
626_I664_L0.9571.00
423_E437_Y0.9571.00
62_R445_Q0.9541.00
283_V313_N0.9531.00
73_V79_Q0.9521.00
360_T365_A0.9511.00
249_K253_K0.9511.00
417_A444_P0.9511.00
226_V275_A0.9511.00
18_G34_D0.9491.00
165_V191_I0.9491.00
555_Y663_G0.9491.00
585_D620_Q0.9481.00
170_V181_L0.9451.00
513_F520_F0.9441.00
217_G300_T0.9441.00
96_E99_A0.9411.00
101_L357_E0.9371.00
588_P592_A0.9361.00
81_L453_W0.9341.00
77_W414_L0.9331.00
492_R495_E0.9301.00
225_K256_S0.9291.00
243_V519_K0.9281.00
416_T454_I0.9281.00
420_F441_L0.9261.00
424_D429_S0.9261.00
341_E345_T0.9261.00
586_I591_A0.9261.00
78_E461_R0.9241.00
194_I211_V0.9241.00
272_E276_G0.9221.00
256_S260_F0.9221.00
259_E263_K0.9211.00
192_T277_L0.9211.00
225_K252_L0.9171.00
282_P316_I0.9171.00
185_K204_L0.9171.00
469_E472_T0.9161.00
84_I395_M0.9161.00
233_T310_A0.9131.00
61_L413_V0.9121.00
196_P210_S0.9111.00
212_K622_H0.9111.00
190_T207_R0.9101.00
85_A89_R0.9091.00
590_I623_A0.9091.00
88_L123_Y0.9071.00
77_W454_I0.9041.00
377_L387_R0.9021.00
66_K79_Q0.9011.00
62_R74_R0.8940.99
248_V522_F0.8930.99
268_M271_L0.8930.99
266_T271_L0.8930.99
234_D316_I0.8920.99
221_A255_V0.8890.99
478_M482_S0.8880.99
158_Y183_Q0.8860.99
266_T270_E0.8860.99
24_D29_T0.8850.99
251_L254_T0.8830.99
257_L272_E0.8830.99
557_Y664_L0.8820.99
555_Y606_N0.8810.99
573_V576_I0.8790.99
227_L307_L0.8790.99
211_V219_L0.8780.99
124_G128_E0.8780.99
552_A661_L0.8750.99
584_V664_L0.8740.99
407_A413_V0.8710.99
185_K191_I0.8700.99
257_L260_F0.8700.99
360_T363_D0.8680.99
354_Q358_V0.8680.99
340_P344_T0.8670.99
473_Q490_L0.8650.99
357_E366_I0.8620.99
269_E273_Y0.8620.99
164_V285_T0.8610.99
509_D512_Q0.8600.99
21_V420_F0.8580.99
224_L307_L0.8580.99
182_Q185_K0.8560.99
124_G129_I0.8560.99
477_E481_S0.8550.99
338_T343_K0.8540.99
222_A226_V0.8540.99
81_L458_L0.8530.99
72_F413_V0.8510.99
63_Y76_S0.8500.99
611_M643_L0.8490.99
589_D619_K0.8490.99
84_I458_L0.8480.99
282_P319_G0.8470.99
165_V201_T0.8470.99
145_D302_R0.8440.99
218_W222_A0.8430.99
221_A251_L0.8410.99
477_E491_E0.8410.99
391_E409_L0.8370.99
19_F44_I0.8360.99
64_P76_S0.8350.99
384_N388_Q0.8350.99
88_L370_I0.8340.99
24_D27_K0.8310.99
306_A522_F0.8290.99
449_K454_I0.8290.99
84_I87_K0.8250.99
591_A596_L0.8250.99
622_H625_T0.8250.99
472_T478_M0.8240.99
587_S617_V0.8200.99
65_M403_M0.8170.99
257_L261_I0.8170.99
192_T207_R0.8160.99
246_D250_E0.8150.99
586_I602_V0.8110.99
460_K471_S0.8100.99
369_I393_V0.8090.99
171_S201_T0.8090.99
162_H190_T0.8090.99
505_Q508_W0.8070.99
119_F458_L0.8060.99
195_D199_N0.8060.99
291_M300_T0.8050.99
519_K524_S0.8040.99
220_A307_L0.8040.99
340_P343_K0.8040.99
221_A252_L0.8030.99
119_F462_L0.8030.99
551_L661_L0.8020.99
83_E86_D0.8010.99
226_V268_M0.8010.99
552_A556_P0.7980.99
499_L503_V0.7970.99
198_F210_S0.7960.99
211_V264_T0.7930.99
103_S106_Y0.7930.99
613_G640_V0.7900.99
92_K123_Y0.7890.99
183_Q187_K0.7890.99
219_L223_V0.7880.99
144_W651_N0.7860.99
119_F455_W0.7850.99
476_L479_G0.7850.99
77_W449_K0.7840.99
289_L293_R0.7830.99
210_S622_H0.7820.99
425_I428_S0.7810.99
404_T407_A0.7810.99
198_F619_K0.7810.99
88_L92_K0.7810.99
423_E473_Q0.7790.99
232_R253_K0.7780.99
277_L281_G0.7780.99
229_E257_L0.7780.99
521_E524_S0.7770.99
353_T653_M0.7760.99
8_A436_Q0.7740.99
55_T418_T0.7720.99
144_W302_R0.7700.98
524_S527_A0.7700.98
608_R660_C0.7700.98
100_V123_Y0.7700.98
270_E277_L0.7680.98
456_S460_K0.7680.98
87_K395_M0.7670.98
285_T304_I0.7650.98
384_N642_A0.7640.98
251_L255_V0.7630.98
212_K265_E0.7620.98
375_N570_S0.7600.98
520_F527_A0.7590.98
125_G128_E0.7580.98
608_R644_T0.7580.98
13_C17_C0.7560.98
367_E393_V0.7550.98
9_C17_C0.7550.98
339_L342_L0.7540.98
473_Q480_L0.7540.98
504_K507_P0.7530.98
352_M355_A0.7530.98
162_H278_Y0.7510.98
426_Y429_S0.7500.98
222_A257_L0.7500.98
371_V398_A0.7490.98
516_P521_E0.7460.98
423_E439_K0.7460.98
342_L346_S0.7450.98
552_A555_Y0.7440.98
351_M355_A0.7420.98
62_R65_M0.7420.98
238_I242_S0.7390.98
217_G303_W0.7370.98
9_C13_C0.7370.98
453_W456_S0.7370.98
592_A597_Q0.7360.98
261_I266_T0.7360.98
209_I219_L0.7350.98
352_M357_E0.7350.98
442_V445_Q0.7310.98
156_D318_G0.7310.98
361_A393_V0.7300.98
589_D593_G0.7300.98
604_I613_G0.7290.98
37_H40_T0.7290.98
104_H129_I0.7280.98
152_H156_D0.7270.98
75_I80_A0.7270.98
282_P317_K0.7270.98
607_D661_L0.7270.98
418_T445_Q0.7260.98
227_L231_G0.7260.98
222_A259_E0.7250.98
57_S402_I0.7230.98
656_T659_D0.7230.98
141_A305_D0.7220.98
375_N406_T0.7220.98
465_G468_F0.7180.98
468_F471_S0.7170.98
86_D89_R0.7170.98
591_A618_M0.7170.98
153_G500_P0.7160.98
230_M279_A0.7160.98
257_L268_M0.7160.98
87_K368_M0.7150.98
518_G524_S0.7150.98
146_F305_D0.7130.98
377_L409_L0.7120.97
33_G44_I0.7110.97
434_Y500_P0.7100.97
276_G279_A0.7100.97
473_Q494_K0.7090.97
519_K522_F0.7060.97
118_R121_N0.7040.97
238_I310_A0.7030.97
202_A208_Y0.7030.97
67_K70_G0.7030.97
362_A392_K0.7030.97
405_D633_W0.7010.97
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37_H436_Q0.5590.91
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587_S590_I0.5550.91
309_A522_F0.5550.91
608_R645_N0.5540.90
546_F550_E0.5540.90
298_G651_N0.5540.90
452_S475_F0.5540.90
218_W260_F0.5530.90
23_V29_T0.5530.90
397_V414_L0.5530.90
169_N195_D0.5530.90
123_Y464_F0.5530.90
464_F468_F0.5520.90
351_M357_E0.5520.90
7_S438_G0.5520.90
338_T344_T0.5520.90
19_F33_G0.5520.90
590_I617_V0.5520.90
515_T522_F0.5510.90
193_V201_T0.5510.90
477_E490_L0.5510.90
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398_A404_T0.5480.90
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225_K259_E0.5450.90
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341_E344_T0.5380.89
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563_H569_H0.5370.89
117_Q121_N0.5370.89
459_A463_G0.5370.89
492_R499_L0.5370.89
135_W138_G0.5360.89
564_P580_Q0.5360.89
270_E274_L0.5350.89
518_G522_F0.5350.89
396_T410_C0.5350.89
330_E333_A0.5340.89
421_E445_Q0.5340.89
112_L422_E0.5340.89
518_G527_A0.5340.89
182_Q204_L0.5340.89
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322_N327_Q0.5320.89
164_V278_Y0.5300.88
227_L283_V0.5300.88
298_G652_G0.5290.88
377_L406_T0.5280.88
53_T573_V0.5280.88
180_H183_Q0.5280.88
601_E615_V0.5270.88
383_T387_R0.5270.88
249_K252_L0.5260.88
558_T659_D0.5250.88
138_G301_I0.5250.88
168_R286_F0.5240.88
617_V620_Q0.5240.88
357_E369_I0.5230.88
352_M356_E0.5230.88
146_F314_V0.5230.88
354_Q357_E0.5230.88
45_C48_G0.5220.88
590_I594_Q0.5220.88
371_V390_F0.5210.88
368_M393_V0.5210.88
91_I100_V0.5210.88
339_L345_T0.5200.88
90_E93_E0.5190.87
588_P617_V0.5180.87
32_D35_P0.5170.87
358_V392_K0.5170.87
242_S245_F0.5170.87
630_E637_G0.5150.87
351_M360_T0.5140.87
357_E362_A0.5140.87
401_S416_T0.5140.87
142_Q321_A0.5140.87
396_T406_T0.5130.87
136_G654_G0.5130.87
221_A248_V0.5130.87
370_I455_W0.5130.87
374_G380_V0.5120.87
61_L403_M0.5120.87
352_M361_A0.5110.87
223_V276_G0.5100.87
94_T394_P0.5100.87
387_R409_L0.5100.87
104_H108_N0.5100.87
563_H630_E0.5100.87
295_K647_T0.5090.86
98_T127_T0.5090.86
503_V508_W0.5080.86
36_N41_E0.5080.86
345_T349_F0.5080.86
132_S136_G0.5080.86
152_H284_S0.5070.86
140_E652_G0.5070.86
227_L280_D0.5070.86
514_L519_K0.5070.86
17_C48_G0.5070.86
102_H116_D0.5070.86
610_S665_K0.5060.86
575_F579_L0.5060.86
466_E469_E0.5050.86
594_Q626_I0.5040.86
75_I395_M0.5040.86
350_S353_T0.5030.86
19_F51_L0.5030.86
55_T420_F0.5030.86
73_V83_E0.5030.86
212_K558_T0.5020.86
23_V26_G0.5020.86
102_H124_G0.5020.86
519_K527_A0.5020.86
358_V389_A0.5020.86
195_D208_Y0.5010.86
648_N653_M0.5010.86
230_M257_L0.5010.86
160_S283_V0.5010.86
556_P594_Q0.5010.86
502_P505_Q0.5010.86
170_V201_T0.5010.86
444_P448_A0.5000.85
123_Y126_V0.5000.85
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2e7zA 1 0.9805 100 0.173 Contact Map
2vpzA 1 0.9745 100 0.186 Contact Map
1h0hA 1 0.9895 100 0.187 Contact Map
1kqfA 3 0.991 100 0.189 Contact Map
2iv2X 1 0.9325 100 0.19 Contact Map
2napA 1 0.964 100 0.198 Contact Map
3ml1A 1 0.9655 100 0.205 Contact Map
2ivfA 1 0.982 100 0.206 Contact Map
1ti6A 3 0.991 100 0.218 Contact Map
1q16A 2 0.994 100 0.227 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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