YYBT - BACSU - GREMLIN Contacts

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YYBT - Uncharacterized protein YybT

UniProt:	P37484	Sequences: MPSFYEKPLFRYPIYALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQEIDAYISTLSYRLKKVGEEALMEMPIGIMLFNDQYYIEWANPFLSSCFNESTLVGRSLYDTCESVVPLIKQEVESETVTLNDRKFRVVIKRDERLLYFFDVTEQIQIEKLYENERTVLAYIFLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEYGIFLKRTSSERFIAVLNEHILTELENSKFSILDEVREKTSFDGVALTLSVGVGASVSSLKELGDLAQSSLDLALGRGGDQVAIKLPNGKVKFYGGKTNPMEKRTRVRARVISHALKEIVTESSNVIIMGHKFPDMDSIGAAIGILKVAQANNKDGFIVIDPNQIGSSVQRLIGEIKKYEELWSRFITPEEAMEISNDDTLLVIVDTHKPSLVMEERLVNKIEHIVVIDHHRRGEEFIRDPLLVYMEPYASSTAELVTELLEYQPKRLKINMIEATALLAGIIVDTKSFSLRTGSRTFDAASYLRAKGADTVLVQKFLKETVDSYIKRAKLIQHTVLYKDNIAIASLPENEEEYFDQVLIAQAADSLLSMSEVEASFAVARRDEQTVCISARSLGEVNVQIIMEALEGGGHLTNAATQLSGISVSEALERLKHAIDEYFEGGVQR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	659 (638)
Sequences:	878 (673)
Seq/√Len:	26.6

BACSU - YYBT
HALSA - Q9HQW0 Q9HRL0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
341_I	414_T	12.172	1.00
633_L	641_A	9.735	1.00
636_I	641_A	6.560	1.00
552_Y	650_D	6.091	1.00
550_V	642_L	5.284	1.00
338_S	411_N	5.040	1.00
425_S	450_E	4.785	1.00
355_A	468_A	4.562	1.00
642_L	646_K	4.459	1.00
553_K	650_D	4.452	1.00
637_S	640_E	4.360	1.00
240_E	308_Y	4.284	1.00
359_I	417_V	4.018	1.00
574_I	594_A	3.775	1.00
633_L	636_I	3.730	1.00
339_N	411_N	3.640	1.00
342_I	370_G	3.528	1.00
265_V	296_V	3.401	1.00
146_V	157_F	3.375	1.00
418_I	421_T	3.332	1.00
620_L	648_A	3.285	1.00
410_S	436_I	3.264	1.00
198_S	587_V	3.249	1.00
418_I	452_I	3.212	1.00
334_V	363_A	3.140	1.00
371_F	414_T	3.075	1.00
544_K	547_Q	3.068	1.00
172_N	234_H	3.056	1.00
600_T	634_S	3.023	1.00
588_E	610_E	2.993	1.00
636_I	644_R	2.984	1.00
169_L	173_E	2.923	1.00
168_K	172_N	2.891	1.00
603_I	645_L	2.855	1.00
334_V	340_V	2.824	1.00
542_R	576_Q	2.793	1.00
619_A	651_E	2.756	1.00
242_S	245_S	2.745	1.00
416_L	436_I	2.722	0.99
339_N	369_D	2.697	0.99
373_V	432_L	2.661	0.99
29_F	40_V	2.611	0.99
88_M	103_L	2.535	0.99
552_Y	558_I	2.506	0.99
106_C	144_F	2.493	0.99
601_V	638_V	2.491	0.99
605_A	617_M	2.423	0.99
316_E	508_G	2.386	0.99
330_L	440_V	2.384	0.99
593_V	642_L	2.381	0.99
591_F	616_I	2.350	0.98
548_H	559_A	2.307	0.98
355_A	467_T	2.257	0.98
352_S	356_A	2.217	0.98
307_F	501_K	2.196	0.98
560_S	642_L	2.191	0.98
360_L	370_G	2.160	0.97
268_G	299_K	2.133	0.97
421_T	427_V	2.129	0.97
138_T	141_D	2.120	0.97
330_L	417_V	2.099	0.97
237_T	241_N	2.090	0.97
340_V	414_T	2.088	0.97
339_N	409_I	2.061	0.96
138_T	143_K	2.035	0.96
406_A	432_L	2.035	0.96
341_I	371_F	1.976	0.95
599_Q	634_S	1.973	0.95
648_A	652_Y	1.966	0.95
468_A	492_L	1.958	0.95
647_H	651_E	1.956	0.95
472_T	492_L	1.948	0.95
136_T	160_V	1.947	0.95
178_A	267_V	1.943	0.95
643_E	647_H	1.940	0.95
620_L	641_A	1.907	0.94
363_A	370_G	1.904	0.94
91_N	95_Y	1.877	0.94
170_Y	173_E	1.871	0.94
341_I	409_I	1.854	0.94
423_K	450_E	1.840	0.93
342_I	586_E	1.824	0.93
142_R	159_D	1.822	0.93
362_V	478_Q	1.815	0.93
178_A	229_A	1.814	0.93
558_I	593_V	1.793	0.92
360_L	399_R	1.777	0.92
416_L	426_L	1.771	0.92
342_I	359_I	1.762	0.92
617_M	630_A	1.759	0.92
346_K	430_E	1.748	0.91
212_A	217_I	1.737	0.91
595_R	616_I	1.733	0.91
640_E	644_R	1.722	0.91
578_A	592_A	1.718	0.91
407_M	435_K	1.715	0.91
361_K	488_E	1.707	0.90
493_L	497_I	1.702	0.90
603_I	641_A	1.689	0.90
386_L	491_A	1.688	0.90
180_I	263_L	1.663	0.89
550_V	646_K	1.661	0.89
402_T	405_E	1.634	0.88
530_K	608_L	1.624	0.88
86_G	490_T	1.619	0.88
396_L	630_A	1.612	0.88
204_V	649_I	1.596	0.87
86_G	205_T	1.588	0.87
358_G	471_V	1.587	0.87
493_L	523_A	1.565	0.86
247_L	519_R	1.560	0.86
330_L	359_I	1.553	0.86
560_S	638_V	1.550	0.85
545_L	559_A	1.547	0.85
38_V	334_V	1.547	0.85
164_I	167_E	1.531	0.85
320_R	323_A	1.529	0.85
359_I	363_A	1.514	0.84
268_G	280_L	1.504	0.84
433_V	452_I	1.500	0.83
551_L	587_V	1.498	0.83
339_N	371_F	1.483	0.83
333_I	415_L	1.478	0.83
416_L	433_V	1.473	0.82
463_Y	508_G	1.473	0.82
386_L	462_P	1.470	0.82
83_M	131_E	1.467	0.82
423_K	448_G	1.445	0.81
374_I	379_I	1.422	0.80
619_A	652_Y	1.422	0.80
591_F	645_L	1.412	0.80
96_I	227_F	1.408	0.79
144_F	496_I	1.408	0.79
490_T	527_L	1.402	0.79
28_S	39_E	1.395	0.79
329_A	457_L	1.393	0.79
188_V	259_V	1.389	0.78
90_F	532_L	1.385	0.78
204_V	239_L	1.383	0.78
317_K	508_G	1.379	0.78
180_I	616_I	1.378	0.78
267_V	298_I	1.378	0.78
48_F	52_R	1.376	0.78
205_T	227_F	1.375	0.78
342_I	360_L	1.369	0.77
33_W	37_T	1.356	0.77
559_A	586_E	1.355	0.77
263_L	464_A	1.354	0.77
338_S	519_R	1.351	0.76
232_N	235_I	1.346	0.76
86_G	102_F	1.343	0.76
316_E	463_Y	1.342	0.76
442_I	474_L	1.337	0.76
340_V	417_V	1.337	0.76
179_Y	281_A	1.321	0.75
403_P	429_E	1.320	0.75
416_L	516_S	1.315	0.74
186_D	433_V	1.310	0.74
577_A	649_I	1.307	0.74
369_D	593_V	1.306	0.74
375_D	416_L	1.303	0.74
306_K	362_V	1.301	0.74
374_I	387_I	1.299	0.73
407_M	429_E	1.298	0.73
231_L	235_I	1.297	0.73
355_A	549_T	1.292	0.73
333_I	440_V	1.288	0.73
248_D	311_K	1.284	0.73
137_V	467_T	1.284	0.73
601_V	633_L	1.281	0.72
477_Y	508_G	1.279	0.72
536_V	551_L	1.277	0.72
549_T	581_L	1.271	0.72
84_P	156_Y	1.264	0.71
35_L	117_L	1.243	0.70
560_S	639_S	1.241	0.70
290_G	329_A	1.240	0.70
513_D	520_A	1.236	0.70
319_T	323_A	1.234	0.70
411_N	414_T	1.231	0.69
564_N	595_R	1.228	0.69
222_T	617_M	1.224	0.69
268_G	452_I	1.219	0.69
298_I	480_K	1.216	0.68
161_T	388_G	1.212	0.68
216_G	275_K	1.202	0.67
393_Y	414_T	1.199	0.67
635_G	640_E	1.198	0.67
356_A	468_A	1.195	0.67
146_V	155_L	1.193	0.67
501_K	579_D	1.193	0.67
441_V	460_M	1.188	0.67
205_T	221_R	1.188	0.67
236_L	269_A	1.185	0.66
355_A	419_V	1.182	0.66
507_T	576_Q	1.179	0.66
427_V	433_V	1.179	0.66
268_G	525_T	1.178	0.66
601_V	636_I	1.177	0.66
338_S	413_D	1.174	0.66
603_I	633_L	1.172	0.65
178_A	231_L	1.168	0.65
430_E	434_N	1.163	0.65
233_E	269_A	1.163	0.65
601_V	641_A	1.159	0.65
405_E	409_I	1.154	0.64
650_D	653_F	1.154	0.64
178_A	482_L	1.152	0.64
611_V	616_I	1.152	0.64
461_E	510_R	1.148	0.64
350_M	493_L	1.144	0.64
559_A	577_A	1.143	0.63
407_M	431_R	1.142	0.63
360_L	365_A	1.141	0.63
371_F	409_I	1.138	0.63
223_S	454_D	1.135	0.63
541_K	577_A	1.131	0.63
356_A	419_V	1.131	0.63
355_A	437_E	1.123	0.62
362_V	475_L	1.108	0.61
266_G	285_L	1.102	0.61
520_A	631_T	1.100	0.60
333_I	456_L	1.100	0.60
513_D	516_S	1.098	0.60
93_Q	615_I	1.097	0.60
94_Y	179_Y	1.097	0.60
418_I	433_V	1.096	0.60
234_H	238_E	1.093	0.60
40_V	342_I	1.091	0.60
233_E	239_L	1.089	0.60
537_D	577_A	1.086	0.59
180_I	229_A	1.085	0.59
106_C	483_K	1.082	0.59
509_S	532_L	1.078	0.59
505_L	605_A	1.068	0.58
348_P	628_N	1.067	0.58
341_I	519_R	1.066	0.58
595_R	649_I	1.050	0.57
463_Y	626_L	1.049	0.57
84_P	236_L	1.039	0.56
318_R	645_L	1.036	0.56
171_E	174_R	1.036	0.56
131_E	334_V	1.036	0.56
595_R	599_Q	1.035	0.56
16_A	24_T	1.031	0.55
433_V	436_I	1.031	0.55
274_L	285_L	1.029	0.55
418_I	427_V	1.026	0.55
603_I	617_M	1.024	0.55
644_R	647_H	1.023	0.55
96_I	634_S	1.023	0.55
556_I	653_F	1.022	0.55
544_K	548_H	1.021	0.55
80_L	166_I	1.021	0.55
221_R	278_G	1.021	0.55
628_N	645_L	1.017	0.54
227_F	559_A	1.016	0.54
593_V	630_A	1.012	0.54
421_T	452_I	1.012	0.54
558_I	646_K	1.010	0.54
162_E	167_E	1.010	0.54
601_V	654_E	1.008	0.54
575_A	581_L	1.005	0.53
536_V	549_T	1.003	0.53
315_M	509_S	1.000	0.53
172_N	448_G	0.998	0.53
248_D	616_I	0.996	0.53
421_T	460_M	0.996	0.53
323_A	519_R	0.991	0.52
356_A	400_F	0.985	0.52
238_E	242_S	0.983	0.52
92_D	237_T	0.980	0.52
366_N	478_Q	0.977	0.51
529_Q	584_M	0.976	0.51
586_E	635_G	0.976	0.51
63_A	128_I	0.973	0.51
30_Y	109_E	0.969	0.51
308_Y	542_R	0.968	0.51
294_D	510_R	0.963	0.50
123_S	137_V	0.960	0.50
290_G	508_G	0.959	0.50
319_T	476_E	0.959	0.50
198_S	205_T	0.959	0.50
528_V	546_I	0.958	0.50
341_I	435_K	0.957	0.50
88_M	470_L	0.956	0.50
22_I	42_L	0.955	0.50
24_T	128_I	0.952	0.49
21_S	577_A	0.949	0.49
178_A	370_G	0.945	0.49
424_P	450_E	0.945	0.49
161_T	165_Q	0.942	0.49
136_T	164_I	0.942	0.49
472_T	484_I	0.939	0.49
181_F	226_R	0.938	0.48
288_A	297_A	0.937	0.48
383_V	572_V	0.937	0.48
342_I	363_A	0.937	0.48
417_V	535_T	0.934	0.48
142_R	162_E	0.933	0.48
253_K	541_K	0.932	0.48
459_Y	498_V	0.931	0.48
39_E	383_V	0.931	0.48
177_L	228_I	0.930	0.48
412_D	587_V	0.926	0.48
24_T	39_E	0.925	0.47
93_Q	144_F	0.925	0.47
422_H	451_F	0.924	0.47
320_R	652_Y	0.924	0.47
176_V	231_L	0.922	0.47
103_L	633_L	0.920	0.47
290_G	491_A	0.918	0.47
342_I	577_A	0.918	0.47
370_G	467_T	0.918	0.47
203_Q	253_K	0.918	0.47
236_L	240_E	0.918	0.47
348_P	493_L	0.915	0.47
238_E	308_Y	0.910	0.46
155_L	615_I	0.909	0.46
436_I	484_I	0.908	0.46
86_G	151_D	0.907	0.46
644_R	648_A	0.907	0.46
322_R	461_E	0.906	0.46
319_T	521_K	0.902	0.46
319_T	517_Y	0.902	0.46
20_L	352_S	0.900	0.46
34_I	549_T	0.900	0.46
131_E	138_T	0.898	0.45
579_D	609_G	0.898	0.45
208_L	653_F	0.898	0.45
296_V	520_A	0.896	0.45
557_A	581_L	0.893	0.45
333_I	491_A	0.893	0.45
41_L	407_M	0.893	0.45
296_V	480_K	0.892	0.45
72_L	76_G	0.891	0.45
25_I	29_F	0.890	0.45
208_L	219_L	0.890	0.45
375_D	378_Q	0.889	0.45
96_I	616_I	0.889	0.45
12_Y	16_A	0.888	0.45
334_V	599_Q	0.888	0.45
371_F	401_I	0.886	0.45
416_L	634_S	0.882	0.44
534_E	576_Q	0.877	0.44
28_S	155_L	0.872	0.44
96_I	394_E	0.872	0.44
462_P	542_R	0.869	0.43
238_E	241_N	0.869	0.43
447_R	451_F	0.869	0.43
121_C	287_L	0.867	0.43
353_I	400_F	0.867	0.43
636_I	640_E	0.867	0.43
237_T	240_E	0.865	0.43
83_M	331_K	0.862	0.43
284_S	382_S	0.862	0.43
92_D	153_R	0.861	0.43
47_L	187_D	0.861	0.43
421_T	492_L	0.860	0.43
381_S	586_E	0.860	0.43
187_D	361_K	0.858	0.43
179_Y	471_V	0.857	0.42
283_S	311_K	0.857	0.42
248_D	319_T	0.856	0.42
122_E	165_Q	0.853	0.42
200_M	521_K	0.850	0.42
442_I	471_V	0.850	0.42
468_A	471_V	0.850	0.42
515_A	576_Q	0.849	0.42
460_M	627_T	0.846	0.42
360_L	364_Q	0.844	0.41
22_I	430_E	0.843	0.41
108_N	144_F	0.841	0.41
348_P	352_S	0.840	0.41
321_V	325_V	0.839	0.41
141_D	388_G	0.837	0.41
363_A	535_T	0.834	0.41
426_L	630_A	0.833	0.41
641_A	648_A	0.832	0.41
24_T	93_Q	0.830	0.40
402_T	415_L	0.828	0.40
617_M	631_T	0.828	0.40
114_G	248_D	0.827	0.40
517_Y	572_V	0.826	0.40
556_I	649_I	0.826	0.40
532_L	569_F	0.825	0.40
240_E	331_K	0.823	0.40
90_F	155_L	0.822	0.40
240_E	306_K	0.821	0.40
26_L	29_F	0.821	0.40
103_L	555_N	0.820	0.40
326_I	459_Y	0.820	0.40
140_N	267_V	0.820	0.40
261_L	336_E	0.819	0.40
334_V	383_V	0.819	0.40
298_I	317_K	0.818	0.40
350_M	516_S	0.818	0.40
269_A	298_I	0.817	0.40
312_T	562_P	0.817	0.40
379_I	384_Q	0.817	0.40
471_V	574_I	0.813	0.39
35_L	412_D	0.812	0.39
223_S	409_I	0.812	0.39
427_V	552_Y	0.810	0.39
407_M	640_E	0.810	0.39
31_F	587_V	0.809	0.39
268_G	284_S	0.808	0.39
577_A	611_V	0.807	0.39
546_I	587_V	0.807	0.39
337_S	415_L	0.807	0.39
178_A	646_K	0.806	0.39
84_P	263_L	0.806	0.39
216_G	235_I	0.805	0.39
318_R	470_L	0.801	0.38
602_C	617_M	0.800	0.38
306_K	320_R	0.797	0.38
79_A	187_D	0.796	0.38
41_L	119_D	0.795	0.38
422_H	460_M	0.795	0.38
555_N	588_E	0.794	0.38
185_Y	424_P	0.793	0.38
141_D	434_N	0.793	0.38
436_I	450_E	0.792	0.38
25_I	39_E	0.791	0.38
451_F	458_V	0.791	0.38
86_G	509_S	0.790	0.38
22_I	178_A	0.789	0.38
56_L	484_I	0.789	0.38
316_E	510_R	0.789	0.38
458_V	533_K	0.787	0.37
96_I	129_K	0.787	0.37
541_K	573_L	0.787	0.37
88_M	157_F	0.786	0.37
611_V	649_I	0.784	0.37
551_L	558_I	0.780	0.37
216_G	654_E	0.780	0.37
449_E	467_T	0.780	0.37
241_N	275_K	0.779	0.37
242_S	474_L	0.778	0.37
617_M	632_Q	0.777	0.37
169_L	234_H	0.774	0.37
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439_I	456_L	0.769	0.36
185_Y	265_V	0.768	0.36
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338_S	605_A	0.763	0.36
52_R	56_L	0.763	0.36
130_Q	208_L	0.762	0.36
263_L	353_I	0.762	0.36
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561_L	569_F	0.757	0.35
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637_S	644_R	0.756	0.35
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531_F	554_D	0.750	0.35
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580_S	584_M	0.742	0.34
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260_A	383_V	0.740	0.34
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141_D	537_D	0.737	0.34
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422_H	452_I	0.737	0.34
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180_I	588_E	0.736	0.34
545_L	573_L	0.733	0.34
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488_E	557_A	0.710	0.32
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142_R	641_A	0.703	0.32
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401_I	407_M	0.697	0.31
380_G	383_V	0.696	0.31
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482_L	549_T	0.687	0.31
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146_V	516_S	0.685	0.31
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17_L	29_F	0.683	0.30
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424_P	433_V	0.667	0.29
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56_L	246_I	0.519	0.21
254_T	322_R	0.519	0.21
213_Q	601_V	0.518	0.21
202_S	476_E	0.517	0.21
211_W	277_L	0.517	0.21
141_D	487_I	0.517	0.21
299_K	457_L	0.517	0.21
568_Y	595_R	0.517	0.21
69_S	89_L	0.516	0.21
90_F	148_I	0.515	0.21
271_V	393_Y	0.515	0.21
261_L	507_T	0.514	0.21
318_R	425_S	0.514	0.21
535_T	547_Q	0.514	0.21
55_S	393_Y	0.514	0.21
120_T	298_I	0.512	0.21
261_L	599_Q	0.512	0.21
42_L	46_I	0.512	0.21
320_R	527_L	0.511	0.21
177_L	218_F	0.510	0.21
302_N	476_E	0.509	0.21
205_T	282_Q	0.509	0.21
214_E	242_S	0.509	0.21
52_R	414_T	0.508	0.21
285_L	501_K	0.507	0.21
209_N	268_G	0.506	0.21
382_S	545_L	0.506	0.21
143_K	180_I	0.506	0.21
297_A	314_P	0.506	0.21
315_M	520_A	0.505	0.20
432_L	573_L	0.505	0.20
86_G	97_E	0.504	0.20
289_L	329_A	0.504	0.20
328_H	331_K	0.504	0.20
630_A	645_L	0.503	0.20
59_Q	611_V	0.503	0.20
220_K	347_F	0.502	0.20
274_L	383_V	0.502	0.20
186_D	352_S	0.502	0.20
198_S	273_S	0.502	0.20
72_L	233_E	0.501	0.20
394_E	615_I	0.501	0.20
266_G	281_A	0.501	0.20
363_A	400_F	0.501	0.20
144_F	448_G	0.500	0.20

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4py9A	2	0.5008	100	0.732	Contact Map
4ls9A	2	0.4719	100	0.738	Contact Map
3devA	2	0.4674	100	0.745	Contact Map
4rpaA	3	0.4461	100	0.796	Contact Map
2hawA	2	0.4507	100	0.798	Contact Map
1k20A	2	0.4446	100	0.809	Contact Map
2eb0A	2	0.431	100	0.82	Contact Map
2zxrA	1	0.4765	100	0.828	Contact Map
1wpnA	2	0.2792	100	0.837	Contact Map
2qb7A	1	0.4947	100	0.843	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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