SRP54 - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SRP54 - Signal recognition particle protein

UniProt:	P37105	Sequences: MAFEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVGQDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLGLTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVLTLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINASRRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMTNMSKGKKKGFKLPFM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	446 (434)
Sequences:	2872 (1350)
Seq/√Len:	64.8

ECOLI - SRP54
BACSU - SRP54
HALSA - SRP54
SULSO - SRP54

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
153_G	160_V	5.077	1.00
106_M	118_S	4.112	1.00
316_K	336_E	4.033	1.00
207_T	240_Q	3.904	1.00
235_K	239_E	3.780	1.00
332_D	389_E	3.685	1.00
147_K	150_E	3.650	1.00
339_G	377_E	3.511	1.00
179_K	183_E	3.310	1.00
197_H	229_D	3.306	1.00
29_K	57_S	3.224	1.00
204_D	208_N	3.084	1.00
238_N	269_T	3.020	1.00
163_L	175_Q	2.973	1.00
119_G	280_L	2.930	1.00
400_K	404_K	2.891	1.00
342_R	377_E	2.867	1.00
277_G	282_A	2.723	1.00
118_S	189_I	2.659	1.00
335_L	381_K	2.653	1.00
178_E	182_E	2.648	1.00
190_L	213_A	2.576	1.00
51_D	265_A	2.519	1.00
119_G	152_L	2.465	1.00
409_S	412_E	2.427	1.00
159_P	185_Y	2.421	1.00
394_I	417_L	2.412	1.00
69_L	305_I	2.365	1.00
52_F	56_V	2.333	1.00
173_A	213_A	2.331	1.00
136_V	176_A	2.322	1.00
161_F	175_Q	2.320	1.00
82_E	85_E	2.312	1.00
118_S	135_L	2.291	1.00
171_E	175_Q	2.289	1.00
334_F	420_F	2.252	1.00
168_S	208_N	2.236	1.00
150_E	154_K	2.228	1.00
168_S	171_E	2.200	1.00
386_L	393_I	2.195	1.00
316_K	319_E	2.194	1.00
403_A	413_V	2.147	1.00
123_N	127_K	2.144	1.00
135_L	153_G	2.082	1.00
321_E	325_R	2.066	1.00
170_V	212_I	2.031	1.00
85_E	89_G	2.028	1.00
138_A	173_A	2.027	1.00
314_E	318_K	2.018	1.00
302_L	305_I	2.018	1.00
126_R	157_D	2.012	1.00
331_L	417_L	2.002	1.00
379_I	413_V	1.994	1.00
125_L	187_Y	1.962	1.00
77_K	81_E	1.897	1.00
217_E	272_K	1.872	1.00
126_R	158_M	1.867	1.00
59_R	82_E	1.861	1.00
122_A	158_M	1.848	1.00
219_F	247_V	1.834	1.00
131_R	187_Y	1.812	1.00
394_I	402_I	1.808	1.00
377_E	381_K	1.803	1.00
59_R	81_E	1.800	1.00
251_L	274_A	1.787	1.00
20_K	27_D	1.766	1.00
94_I	125_L	1.753	1.00
134_M	179_K	1.743	1.00
67_K	315_D	1.742	1.00
135_L	189_I	1.735	1.00
132_K	185_Y	1.727	0.99
375_H	412_E	1.722	0.99
243_L	269_T	1.706	0.99
170_V	208_N	1.698	0.99
54_K	58_E	1.695	0.99
51_D	55_K	1.695	0.99
204_D	207_T	1.647	0.99
55_K	85_E	1.645	0.99
80_Q	84_T	1.637	0.99
318_K	321_E	1.635	0.99
218_I	241_L	1.630	0.99
140_I	172_I	1.617	0.99
150_E	162_S	1.613	0.99
251_L	291_M	1.612	0.99
375_H	408_T	1.607	0.99
91_E	285_P	1.603	0.99
177_I	188_V	1.588	0.99
420_F	424_K	1.581	0.99
371_K	374_N	1.578	0.99
210_K	242_G	1.566	0.99
219_F	245_G	1.557	0.99
59_R	85_E	1.554	0.99
386_L	390_Q	1.553	0.99
136_V	188_V	1.551	0.99
133_P	185_Y	1.542	0.99
96_V	187_Y	1.540	0.99
332_D	385_V	1.529	0.99
98_K	102_T	1.519	0.99
330_T	389_E	1.499	0.99
152_L	156_L	1.479	0.98
28_V	61_V	1.479	0.98
141_Y	172_I	1.465	0.98
140_I	169_P	1.459	0.98
54_K	57_S	1.457	0.98
315_D	319_E	1.447	0.98
210_K	218_I	1.441	0.98
121_L	247_V	1.440	0.98
123_N	281_D	1.440	0.98
124_L	129_H	1.439	0.98
103_V	190_L	1.430	0.98
209_V	213_A	1.429	0.98
156_L	280_L	1.414	0.98
408_T	412_E	1.412	0.98
290_R	306_E	1.409	0.98
127_K	310_A	1.405	0.98
124_L	273_F	1.401	0.98
80_Q	293_S	1.399	0.98
154_K	157_D	1.392	0.98
17_I	31_M	1.389	0.98
178_E	181_K	1.378	0.97
32_M	57_S	1.359	0.97
222_V	263_I	1.358	0.97
152_L	280_L	1.353	0.97
248_L	260_A	1.350	0.97
307_K	353_M	1.349	0.97
97_A	102_T	1.348	0.97
117_T	275_G	1.336	0.97
103_V	177_I	1.333	0.97
354_M	357_A	1.331	0.97
399_R	417_L	1.325	0.97
136_V	173_A	1.320	0.97
236_S	240_Q	1.318	0.97
134_M	185_Y	1.317	0.97
133_P	159_P	1.310	0.97
51_D	54_K	1.305	0.96
207_T	211_E	1.293	0.96
309_Q	314_E	1.290	0.96
55_K	82_E	1.284	0.96
135_L	160_V	1.283	0.96
102_T	216_E	1.278	0.96
379_I	416_L	1.272	0.96
229_D	232_N	1.254	0.96
179_K	185_Y	1.253	0.96
274_A	291_M	1.252	0.95
339_G	381_K	1.249	0.95
97_A	100_P	1.249	0.95
14_I	17_I	1.239	0.95
197_H	236_S	1.232	0.95
369_D	374_N	1.229	0.95
176_A	188_V	1.225	0.95
15_S	19_G	1.218	0.95
349_E	352_Q	1.217	0.95
347_L	351_L	1.210	0.95
170_V	209_V	1.209	0.95
276_L	283_L	1.208	0.95
346_P	349_E	1.206	0.94
392_D	421_D	1.206	0.94
117_T	247_V	1.200	0.94
342_R	374_N	1.197	0.94
173_A	212_I	1.186	0.94
26_Q	30_E	1.181	0.94
103_V	188_V	1.176	0.94
166_Q	171_E	1.172	0.94
96_V	131_R	1.166	0.93
287_H	303_T	1.162	0.93
123_N	126_R	1.162	0.93
10_L	13_T	1.149	0.93
59_R	64_D	1.146	0.93
175_Q	178_E	1.146	0.93
153_G	159_P	1.143	0.93
335_L	377_E	1.141	0.93
334_F	338_L	1.133	0.92
174_K	212_I	1.132	0.92
358_G	362_G	1.130	0.92
104_I	189_I	1.129	0.92
179_K	182_E	1.127	0.92
32_M	53_V	1.124	0.92
174_K	178_E	1.121	0.92
396_A	399_R	1.116	0.92
335_L	339_G	1.115	0.92
32_M	56_V	1.113	0.92
313_D	316_K	1.113	0.92
105_M	206_L	1.106	0.91
69_L	302_L	1.106	0.91
200_H	204_D	1.103	0.91
318_K	322_Q	1.103	0.91
171_E	174_K	1.102	0.91
9_R	41_E	1.101	0.91
134_M	159_P	1.100	0.91
153_G	156_L	1.078	0.90
197_H	233_V	1.075	0.90
217_E	244_T	1.068	0.90
123_N	280_L	1.063	0.90
123_N	283_L	1.063	0.90
396_A	410_V	1.059	0.90
229_D	233_V	1.045	0.89
208_N	212_I	1.043	0.89
27_D	75_V	1.043	0.89
12_Q	16_K	1.041	0.89
433_M	436_G	1.039	0.89
360_M	363_L	1.034	0.88
105_M	190_L	1.034	0.88
339_G	342_R	1.032	0.88
177_I	213_A	1.030	0.88
94_I	219_F	1.028	0.88
93_K	129_H	1.026	0.88
319_E	322_Q	1.021	0.88
406_S	409_S	1.015	0.87
151_T	154_K	1.008	0.87
159_P	179_K	1.007	0.87
224_S	251_L	1.000	0.87
379_I	408_T	1.000	0.87
200_H	240_Q	1.000	0.87
167_V	171_E	0.999	0.87
15_S	20_K	0.997	0.87
25_E	61_V	0.997	0.87
325_R	431_T	0.990	0.86
112_A	118_S	0.990	0.86
215_P	218_I	0.989	0.86
385_V	389_E	0.987	0.86
63_Q	67_K	0.979	0.86
289_E	302_L	0.975	0.85
346_P	350_L	0.974	0.85
260_A	271_I	0.971	0.85
16_K	30_E	0.966	0.85
137_A	163_L	0.966	0.85
96_V	102_T	0.963	0.85
371_K	375_H	0.961	0.84
392_D	424_K	0.959	0.84
141_Y	205_E	0.958	0.84
95_A	216_E	0.954	0.84
287_H	290_R	0.954	0.84
32_M	75_V	0.953	0.84
117_T	283_L	0.953	0.84
331_L	393_I	0.949	0.84
98_K	216_E	0.948	0.84
106_M	247_V	0.946	0.84
123_N	156_L	0.941	0.83
55_K	265_A	0.940	0.83
33_R	37_L	0.939	0.83
242_G	269_T	0.939	0.83
372_Q	419_Q	0.933	0.83
163_L	167_V	0.933	0.83
202_L	206_L	0.929	0.82
94_I	104_I	0.924	0.82
177_I	181_K	0.921	0.82
379_I	403_A	0.920	0.82
26_Q	29_K	0.920	0.82
137_A	146_I	0.917	0.82
22_K	64_D	0.915	0.81
173_A	177_I	0.912	0.81
233_V	236_S	0.910	0.81
164_G	167_V	0.907	0.81
136_V	190_L	0.898	0.80
422_E	425_K	0.894	0.80
312_V	317_A	0.892	0.80
104_I	187_Y	0.889	0.80
235_K	238_N	0.888	0.79
210_K	243_L	0.888	0.79
357_A	360_M	0.884	0.79
338_L	423_M	0.882	0.79
103_V	216_E	0.881	0.79
60_A	78_V	0.880	0.79
251_L	276_L	0.877	0.79
290_R	303_T	0.875	0.78
369_D	372_Q	0.870	0.78
292_A	295_I	0.869	0.78
162_S	165_D	0.864	0.78
31_M	75_V	0.864	0.78
131_R	186_D	0.863	0.77
126_R	154_K	0.863	0.77
170_V	177_I	0.863	0.77
91_E	287_H	0.862	0.77
320_L	327_M	0.861	0.77
126_R	156_L	0.852	0.77
106_M	275_G	0.850	0.76
236_S	239_E	0.848	0.76
55_K	58_E	0.847	0.76
23_V	28_V	0.847	0.76
99_R	102_T	0.845	0.76
334_F	376_V	0.841	0.76
141_Y	169_P	0.839	0.75
24_S	27_D	0.839	0.75
23_V	75_V	0.836	0.75
81_E	302_L	0.836	0.75
106_M	117_T	0.835	0.75
307_K	310_A	0.834	0.75
231_V	266_V	0.829	0.75
219_F	272_K	0.829	0.75
347_L	350_L	0.826	0.74
328_S	424_K	0.824	0.74
408_T	411_Q	0.823	0.74
289_E	293_S	0.823	0.74
150_E	164_G	0.819	0.74
122_A	156_L	0.819	0.74
150_E	160_V	0.809	0.73
124_L	285_P	0.804	0.72
386_L	389_E	0.803	0.72
35_V	75_V	0.802	0.72
70_T	73_Q	0.802	0.72
305_I	309_Q	0.800	0.72
399_R	414_N	0.800	0.72
167_V	175_Q	0.799	0.72
177_I	212_I	0.799	0.72
134_M	188_V	0.794	0.71
372_Q	375_H	0.793	0.71
315_D	318_K	0.792	0.71
133_P	216_E	0.792	0.71
146_I	164_G	0.788	0.71
348_D	363_L	0.783	0.70
134_M	183_E	0.780	0.70
321_E	324_M	0.780	0.70
105_M	218_I	0.779	0.70
208_N	211_E	0.777	0.70
89_G	264_R	0.776	0.70
433_M	437_K	0.776	0.70
368_V	374_N	0.775	0.70
320_L	324_M	0.774	0.69
88_G	288_P	0.772	0.69
147_K	165_D	0.772	0.69
147_K	164_G	0.770	0.69
137_A	162_S	0.769	0.69
222_V	248_L	0.768	0.69
238_N	243_L	0.768	0.69
119_G	156_L	0.766	0.69
14_I	23_V	0.765	0.69
28_V	75_V	0.764	0.68
374_N	381_K	0.759	0.68
211_E	214_N	0.756	0.68
246_V	263_I	0.756	0.68
301_V	305_I	0.755	0.67
374_N	377_E	0.755	0.67
73_Q	301_V	0.755	0.67
271_I	274_A	0.754	0.67
322_Q	326_T	0.754	0.67
119_G	155_Q	0.753	0.67
138_A	190_L	0.751	0.67
112_A	224_S	0.750	0.67
170_V	213_A	0.750	0.67
27_D	30_E	0.746	0.67
425_K	429_Q	0.745	0.66
369_D	375_H	0.744	0.66
36_R	49_V	0.744	0.66
412_E	415_R	0.738	0.66
334_F	426_M	0.738	0.66
77_K	309_Q	0.737	0.66
152_L	155_Q	0.737	0.66
170_V	173_A	0.736	0.66
66_M	305_I	0.733	0.65
12_Q	15_S	0.731	0.65
35_V	76_I	0.731	0.65
390_Q	393_I	0.729	0.65
62_G	65_V	0.729	0.65
137_A	160_V	0.728	0.65
331_L	420_F	0.728	0.65
351_L	354_M	0.728	0.65
328_S	392_D	0.725	0.64
348_D	367_Q	0.724	0.64
424_K	428_K	0.723	0.64
146_I	163_L	0.723	0.64
155_Q	282_A	0.720	0.64
32_M	35_V	0.720	0.64
42_A	256_R	0.718	0.64
419_Q	423_M	0.716	0.63
342_R	370_E	0.715	0.63
316_K	343_N	0.714	0.63
415_R	419_Q	0.712	0.63
421_D	424_K	0.709	0.63
359_K	362_G	0.709	0.63
323_K	330_T	0.704	0.62
15_S	18_R	0.703	0.62
147_K	151_T	0.702	0.62
220_L	246_V	0.700	0.62
50_K	54_K	0.698	0.61
434_S	437_K	0.697	0.61
406_S	411_Q	0.692	0.61
23_V	31_M	0.692	0.61
396_A	400_K	0.689	0.60
173_A	190_L	0.686	0.60
206_L	218_I	0.684	0.60
307_K	311_S	0.684	0.60
189_I	283_L	0.684	0.60
66_M	81_E	0.683	0.60
163_L	171_E	0.681	0.60
72_G	76_I	0.681	0.60
319_E	330_T	0.680	0.59
140_I	205_E	0.679	0.59
380_I	388_K	0.675	0.59
220_L	233_V	0.675	0.59
110_Q	196_L	0.674	0.59
362_G	365_N	0.672	0.58
360_M	366_I	0.672	0.58
161_F	179_K	0.670	0.58
322_Q	325_R	0.667	0.58
73_Q	298_M	0.665	0.58
203_M	229_D	0.664	0.58
243_L	275_G	0.663	0.57
365_N	369_D	0.663	0.57
153_G	158_M	0.660	0.57
244_T	269_T	0.659	0.57
372_Q	423_M	0.659	0.57
222_V	391_P	0.658	0.57
107_V	158_M	0.658	0.57
372_Q	412_E	0.657	0.57
19_G	24_S	0.656	0.57
190_L	209_V	0.656	0.57
382_S	405_G	0.656	0.57
346_P	354_M	0.653	0.56
163_L	166_Q	0.653	0.56
395_N	399_R	0.650	0.56
306_E	309_Q	0.648	0.56
188_V	213_A	0.648	0.56
125_L	272_K	0.647	0.56
14_I	21_G	0.646	0.56
102_T	131_R	0.646	0.56
28_V	32_M	0.645	0.55
133_P	186_D	0.645	0.55
162_S	167_V	0.644	0.55
273_F	285_P	0.643	0.55
419_Q	422_E	0.643	0.55
338_L	373_L	0.641	0.55
332_D	381_K	0.640	0.55
357_A	362_G	0.639	0.55
287_H	306_E	0.639	0.55
86_L	244_T	0.636	0.54
95_A	102_T	0.635	0.54
327_M	431_T	0.634	0.54
117_T	276_L	0.634	0.54
334_F	424_K	0.634	0.54
33_R	50_K	0.633	0.54
135_L	159_P	0.633	0.54
63_Q	315_D	0.632	0.54
147_K	154_K	0.632	0.54
307_K	349_E	0.630	0.54
81_E	305_I	0.630	0.54
350_L	354_M	0.628	0.53
168_S	176_A	0.627	0.53
352_Q	361_K	0.624	0.53
307_K	409_S	0.624	0.53
276_L	307_K	0.623	0.53
344_M	350_L	0.622	0.53
320_L	323_K	0.622	0.53
327_M	424_K	0.622	0.53
141_Y	202_L	0.621	0.53
309_Q	312_V	0.619	0.52
340_Q	344_M	0.618	0.52
323_K	333_D	0.617	0.52
35_V	87_M	0.617	0.52
107_V	218_I	0.616	0.52
137_A	335_L	0.616	0.52
421_D	425_K	0.616	0.52
97_A	101_P	0.616	0.52
275_G	400_K	0.609	0.51
106_M	189_I	0.609	0.51
135_L	149_L	0.608	0.51
14_I	31_M	0.606	0.51
56_V	79_V	0.606	0.51
57_S	61_V	0.605	0.51
66_M	74_Q	0.604	0.51
332_D	335_L	0.604	0.51
378_A	408_T	0.603	0.51
276_L	284_E	0.603	0.51
3_F	326_T	0.602	0.50
15_S	27_D	0.602	0.50
420_F	427_M	0.602	0.50
13_T	16_K	0.601	0.50
238_N	241_L	0.600	0.50
14_I	72_G	0.599	0.50
4_E	93_K	0.599	0.50
150_E	165_D	0.599	0.50
156_L	160_V	0.599	0.50
37_L	40_L	0.598	0.50
334_F	349_E	0.598	0.50
8_D	12_Q	0.598	0.50
334_F	377_E	0.598	0.50
76_I	302_L	0.597	0.50
201_E	204_D	0.596	0.50
2_A	164_G	0.595	0.50
203_M	225_M	0.594	0.49
358_G	363_L	0.593	0.49
417_L	420_F	0.593	0.49
116_T	275_G	0.591	0.49
299_G	355_P	0.591	0.49
40_L	56_V	0.590	0.49
9_R	14_I	0.590	0.49
166_Q	175_Q	0.589	0.49
78_V	313_D	0.588	0.49
284_E	291_M	0.588	0.49
351_L	357_A	0.588	0.49
77_K	226_T	0.587	0.49
214_N	244_T	0.585	0.48
219_F	406_S	0.585	0.48
170_V	246_V	0.585	0.48
200_H	386_L	0.584	0.48
401_R	405_G	0.584	0.48
242_G	358_G	0.584	0.48
365_N	368_V	0.583	0.48
137_A	153_G	0.582	0.48
11_Q	359_K	0.582	0.48
206_L	236_S	0.582	0.48
246_V	269_T	0.582	0.48
348_D	352_Q	0.581	0.48
130_N	162_S	0.580	0.48
169_P	209_V	0.579	0.48
9_R	36_R	0.579	0.48
273_F	406_S	0.578	0.48
150_E	153_G	0.575	0.47
69_L	152_L	0.575	0.47
393_I	417_L	0.573	0.47
197_H	206_L	0.573	0.47
206_L	233_V	0.572	0.47
308_A	312_V	0.572	0.47
66_M	69_L	0.571	0.47
55_K	350_L	0.569	0.47
199_D	203_M	0.568	0.46
178_E	211_E	0.567	0.46
89_G	92_S	0.567	0.46
348_D	370_E	0.566	0.46
27_D	35_V	0.566	0.46
165_D	168_S	0.566	0.46
156_L	159_P	0.565	0.46
256_R	292_A	0.565	0.46
59_R	65_V	0.563	0.46
92_S	264_R	0.563	0.46
87_M	291_M	0.560	0.46
27_D	305_I	0.560	0.46
16_K	21_G	0.559	0.45
274_A	303_T	0.558	0.45
28_V	31_M	0.558	0.45
225_M	254_D	0.558	0.45
410_V	414_N	0.557	0.45
311_S	314_E	0.556	0.45
137_A	216_E	0.556	0.45
326_T	428_K	0.556	0.45
27_D	72_G	0.555	0.45
331_L	380_I	0.553	0.45
249_T	253_G	0.552	0.45
350_L	375_H	0.552	0.45
357_A	361_K	0.552	0.45
140_I	146_I	0.551	0.44
69_L	74_Q	0.551	0.44
282_A	285_P	0.551	0.44
164_G	250_K	0.551	0.44
106_M	121_L	0.551	0.44
161_F	164_G	0.550	0.44
140_I	163_L	0.550	0.44
223_D	250_K	0.549	0.44
87_M	106_M	0.549	0.44
3_F	7_A	0.548	0.44
343_N	348_D	0.547	0.44
46_F	50_K	0.546	0.44
56_V	323_K	0.544	0.44
56_V	60_A	0.543	0.44
70_T	297_G	0.542	0.43
337_Q	341_V	0.542	0.43
209_V	212_I	0.542	0.43
23_V	27_D	0.541	0.43
83_L	301_V	0.541	0.43
226_T	230_A	0.541	0.43
211_E	385_V	0.541	0.43
204_D	239_E	0.540	0.43
198_I	204_D	0.539	0.43
123_N	155_Q	0.539	0.43
55_K	59_R	0.538	0.43
182_E	239_E	0.538	0.43
346_P	352_Q	0.537	0.43
132_K	179_K	0.536	0.43
30_E	63_Q	0.536	0.43
126_R	155_Q	0.536	0.43
302_L	309_Q	0.536	0.43
69_L	73_Q	0.536	0.43
37_L	41_E	0.535	0.43
198_I	203_M	0.535	0.43
181_K	216_E	0.535	0.43
204_D	211_E	0.534	0.43
12_Q	64_D	0.533	0.42
23_V	79_V	0.532	0.42
103_V	181_K	0.531	0.42
9_R	391_P	0.531	0.42
39_L	49_V	0.531	0.42
319_E	323_K	0.531	0.42
181_K	204_D	0.530	0.42
400_K	411_Q	0.530	0.42
238_N	263_I	0.529	0.42
5_G	8_D	0.529	0.42
168_S	212_I	0.528	0.42
177_I	209_V	0.527	0.42
102_T	137_A	0.526	0.42
135_L	213_A	0.526	0.42
38_A	260_A	0.526	0.42
372_Q	415_R	0.526	0.42
18_R	188_V	0.526	0.42
341_V	376_V	0.526	0.42
220_L	243_L	0.525	0.42
375_H	424_K	0.525	0.42
202_L	310_A	0.525	0.42
341_V	354_M	0.524	0.41
368_V	372_Q	0.524	0.41
68_S	267_T	0.524	0.41
303_T	306_E	0.524	0.41
99_R	216_E	0.524	0.41
181_K	348_D	0.524	0.41
190_L	212_I	0.524	0.41
105_M	424_K	0.523	0.41
196_L	229_D	0.523	0.41
367_Q	374_N	0.522	0.41
146_I	250_K	0.522	0.41
36_R	155_Q	0.521	0.41
188_V	268_N	0.520	0.41
87_M	224_S	0.520	0.41
192_T	298_M	0.520	0.41
409_S	415_R	0.519	0.41
155_Q	280_L	0.518	0.41
432_N	437_K	0.517	0.41
155_Q	279_K	0.517	0.41
29_K	238_N	0.516	0.40
110_Q	203_M	0.516	0.40
392_D	395_N	0.515	0.40
118_S	122_A	0.514	0.40
54_K	106_M	0.513	0.40
368_V	373_L	0.512	0.40
35_V	248_L	0.512	0.40
174_K	406_S	0.510	0.40
197_H	232_N	0.510	0.40
324_M	327_M	0.509	0.40
146_I	169_P	0.509	0.40
138_A	176_A	0.509	0.40
50_K	55_K	0.509	0.40
140_I	166_Q	0.509	0.40
117_T	243_L	0.509	0.40
76_I	298_M	0.508	0.40
386_L	413_V	0.506	0.39
92_S	272_K	0.506	0.39
264_R	268_N	0.505	0.39
312_V	349_E	0.505	0.39
10_L	35_V	0.505	0.39
366_I	369_D	0.504	0.39
153_G	163_L	0.504	0.39
170_V	174_K	0.504	0.39
23_V	65_V	0.503	0.39
225_M	295_I	0.503	0.39
198_I	289_E	0.502	0.39
99_R	181_K	0.502	0.39
2_A	7_A	0.502	0.39
130_N	214_N	0.502	0.39
347_L	363_L	0.501	0.39
2_A	5_G	0.501	0.39
138_A	381_K	0.501	0.39
310_A	315_D	0.500	0.39
144_A	155_Q	0.500	0.39
18_R	359_K	0.500	0.39

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ffhA	4	0.9126	100	0.384	Contact Map
2v3cC	1	0.8991	100	0.393	Contact Map
2xxaA	1	0.9238	100	0.395	Contact Map
2j37W	1	0.9753	100	0.408	Contact Map
3dm5A	4	0.9305	100	0.438	Contact Map
3kl4A	1	0.9126	100	0.444	Contact Map
4c7oA	1	0.6659	100	0.617	Contact Map
1ls1A	1	0.648	100	0.631	Contact Map
2yhsA	1	0.657	100	0.658	Contact Map
2og2A	1	0.6278	100	0.664	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0122 seconds.