RBSA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

RBSA - Ribose import ATP-binding protein RbsA

UniProt:	P36947	Sequences: MQIEMKDIHKTFGKNQVLSGVSFQLMPGEVHALMGENGAGKSTLMNILTGLHKADKGQISINGNETYFSNPKEAEQHGIAFIHQELNIWPEMTVLENLFIGKEISSKLGVLQTRKMKALAKEQFDKLSVSLSLDQEAGECSVGQQQMIEIAKALMTNAEVIIMDEPTAALTEREISKLFEVITALKKNGVSIVYISHRMEEIFAICDRITIMRDGKTVDTTNISETDFDEVVKKMVGRELTERYPKRTPSLGDKVFEVKNASVKGSFEDVSFYVRSGEIVGVSGLMGAGRTEMMRALFGVDRLDTGEIWIAGKKTAIKNPQEAVKKGLGFITENRKDEGLLLDTSIRENIALPNLSSFSPKGLIDHKREAEFVDLLIKRLTIKTASPETHARHLSGGNQQKVVIAKWIGIGPKVLILDEPTRGVDVGAKREIYTLMNELTERGVAIIMVSSELPEILGMSDRIIVVHEGRISGEIHAREATQERIMTLATGGR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	493 (486)
Sequences:	3141 (2213)
Seq/√Len:	100.4

ECOLI - MGLA YTFR YPHE ALSA XYLG ARAG LSRA RBSA
BACSU - RBSA YUFO YKPA YFMM
HALSA - Q9HR21
SULSO - Y2030 Y1893

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
58_Q	65_E	4.651	1.00
307_E	314_K	3.759	1.00
62_N	159_E	3.720	1.00
7_D	20_G	3.695	1.00
257_E	273_Y	3.694	1.00
29_E	208_R	3.655	1.00
117_K	134_D	3.397	1.00
19_S	216_K	3.394	1.00
32_A	206_C	3.330	1.00
121_K	125_D	3.252	1.00
115_K	119_L	3.227	1.00
295_R	301_D	3.182	1.00
183_T	204_A	3.153	1.00
219_D	234_K	3.082	1.00
260_N	269_D	3.081	1.00
31_H	210_T	3.074	1.00
119_L	122_E	3.059	1.00
257_E	309_W	3.052	1.00
448_M	459_M	3.029	1.00
254_K	257_E	3.020	1.00
259_K	307_E	2.856	1.00
30_V	182_I	2.840	1.00
4_E	24_Q	2.763	1.00
6_K	58_Q	2.753	1.00
11_T	16_Q	2.700	1.00
377_I	387_P	2.634	1.00
258_V	272_F	2.600	1.00
222_N	225_E	2.558	1.00
413_K	444_V	2.547	1.00
12_F	52_H	2.525	1.00
68_F	77_H	2.505	1.00
254_K	273_Y	2.504	1.00
294_M	449_V	2.462	1.00
135_Q	139_E	2.450	1.00
341_L	352_L	2.427	1.00
311_A	413_K	2.422	1.00
206_C	223_I	2.405	1.00
16_Q	19_S	2.381	1.00
375_L	379_R	2.317	1.00
258_V	261_A	2.244	1.00
253_D	276_S	2.213	1.00
5_M	8_I	2.205	1.00
126_K	188_N	2.191	1.00
464_I	474_E	2.191	1.00
7_D	22_S	2.187	1.00
473_G	488_L	2.175	1.00
438_E	442_R	2.147	1.00
274_V	280_V	2.123	1.00
82_I	163_M	2.121	1.00
112_Q	115_K	2.114	1.00
233_K	239_E	2.097	1.00
279_I	436_M	2.096	1.00
377_I	384_T	2.084	1.00
45_M	81_F	2.082	1.00
5_M	48_L	2.082	1.00
476_H	479_E	2.081	1.00
350_I	382_I	2.056	1.00
9_H	16_Q	2.024	1.00
310_I	315_T	2.022	1.00
475_I	488_L	2.009	1.00
118_A	122_E	2.003	1.00
61_I	160_V	1.997	1.00
364_I	369_E	1.960	1.00
176_S	204_A	1.952	1.00
254_K	275_R	1.924	1.00
4_E	60_S	1.921	1.00
259_K	309_W	1.909	1.00
457_L	480_A	1.877	1.00
94_V	131_L	1.869	1.00
318_K	322_E	1.868	1.00
11_T	56_K	1.860	1.00
126_K	184_A	1.842	1.00
186_K	207_D	1.836	1.00
89_W	100_I	1.813	1.00
480_A	484_R	1.811	1.00
110_V	363_L	1.811	1.00
346_I	384_T	1.811	1.00
374_D	378_K	1.803	1.00
351_A	369_E	1.800	1.00
88_I	137_A	1.768	1.00
9_H	20_G	1.748	1.00
255_V	445_A	1.746	1.00
51_L	83_H	1.735	1.00
268_E	470_R	1.722	1.00
274_V	445_A	1.701	1.00
309_W	314_K	1.688	1.00
272_F	282_V	1.669	1.00
60_S	65_E	1.661	1.00
183_T	186_K	1.653	1.00
479_E	484_R	1.628	1.00
227_D	230_E	1.612	1.00
403_V	406_K	1.606	1.00
25_L	160_V	1.600	1.00
376_L	405_A	1.582	1.00
6_K	60_S	1.576	1.00
69_S	73_E	1.566	1.00
280_V	464_I	1.565	1.00
347_R	388_E	1.564	1.00
11_T	55_D	1.559	1.00
125_D	130_S	1.551	1.00
70_N	73_E	1.548	1.00
226_T	230_E	1.544	1.00
91_E	138_G	1.535	1.00
368_R	371_E	1.533	1.00
95_L	117_K	1.513	1.00
313_K	326_K	1.510	1.00
7_D	56_K	1.496	1.00
463_I	480_A	1.494	1.00
477_A	480_A	1.491	1.00
296_A	303_L	1.482	1.00
132_S	135_Q	1.473	1.00
293_M	466_V	1.473	1.00
45_M	195_I	1.463	1.00
121_K	133_L	1.451	1.00
9_H	56_K	1.445	1.00
122_E	126_K	1.427	1.00
230_E	233_K	1.419	1.00
295_R	338_E	1.408	1.00
203_F	231_V	1.403	1.00
310_I	414_V	1.402	1.00
64_N	77_H	1.398	1.00
27_P	191_S	1.398	1.00
24_Q	208_R	1.392	1.00
159_E	190_V	1.386	1.00
340_L	391_A	1.380	0.99
481_T	484_R	1.379	0.99
90_P	145_Q	1.378	0.99
184_A	188_N	1.375	0.99
163_M	192_I	1.365	0.99
158_A	161_I	1.364	0.99
13_G	385_A	1.364	0.99
274_V	447_I	1.361	0.99
365_D	368_R	1.358	0.99
263_V	304_D	1.356	0.99
96_E	113_T	1.351	0.99
334_N	337_D	1.351	0.99
22_S	217_T	1.340	0.99
34_M	199_M	1.332	0.99
274_V	414_V	1.332	0.99
254_K	259_K	1.327	0.99
436_M	448_M	1.316	0.99
13_G	16_Q	1.312	0.99
31_H	220_T	1.309	0.99
267_F	270_V	1.306	0.99
20_G	216_K	1.304	0.99
221_T	226_T	1.300	0.99
221_T	234_K	1.294	0.99
262_S	269_D	1.287	0.99
317_I	322_E	1.278	0.99
438_E	441_E	1.278	0.99
68_F	73_E	1.277	0.99
115_K	118_A	1.267	0.99
261_A	296_A	1.263	0.99
371_E	375_L	1.249	0.99
332_T	338_E	1.244	0.99
456_I	460_S	1.242	0.99
358_F	372_F	1.241	0.99
436_M	459_M	1.219	0.99
263_V	267_F	1.211	0.99
345_S	348_E	1.209	0.99
376_L	382_I	1.207	0.99
49_T	81_F	1.207	0.99
417_L	436_M	1.205	0.99
202_I	223_I	1.204	0.99
123_Q	155_M	1.199	0.99
127_L	151_A	1.198	0.99
93_T	96_E	1.192	0.98
114_R	118_A	1.191	0.98
484_R	488_L	1.189	0.98
211_I	234_K	1.182	0.98
272_F	280_V	1.180	0.98
104_I	116_M	1.173	0.98
73_E	76_Q	1.172	0.98
8_I	47_I	1.167	0.98
25_L	191_S	1.167	0.98
179_F	205_I	1.164	0.98
54_A	67_Y	1.162	0.98
319_N	322_E	1.158	0.98
136_E	139_E	1.156	0.98
203_F	227_D	1.153	0.98
94_V	135_Q	1.152	0.98
485_I	489_A	1.146	0.98
3_I	61_I	1.146	0.98
177_K	180_E	1.144	0.98
26_M	208_R	1.137	0.98
343_D	392_R	1.133	0.98
182_I	205_I	1.130	0.98
282_V	464_I	1.130	0.98
80_A	158_A	1.129	0.98
182_I	194_Y	1.129	0.98
104_I	111_L	1.126	0.98
321_Q	325_K	1.125	0.98
251_L	275_R	1.120	0.98
208_R	222_N	1.119	0.98
106_S	112_Q	1.118	0.98
331_I	417_L	1.115	0.98
247_R	441_E	1.114	0.98
374_D	387_P	1.113	0.98
137_A	148_I	1.105	0.97
375_L	378_K	1.101	0.97
370_A	388_E	1.099	0.97
385_A	393_H	1.093	0.97
291_T	333_E	1.093	0.97
209_I	223_I	1.091	0.97
230_E	234_K	1.084	0.97
255_V	311_A	1.077	0.97
117_K	121_K	1.074	0.97
118_A	121_K	1.072	0.97
294_M	416_I	1.071	0.97
21_V	212_M	1.068	0.97
267_F	296_A	1.062	0.97
184_A	187_K	1.061	0.97
276_S	445_A	1.060	0.97
259_K	273_Y	1.059	0.97
350_I	373_V	1.056	0.97
27_P	159_E	1.049	0.97
13_G	17_V	1.048	0.97
128_S	184_A	1.044	0.96
217_T	220_T	1.044	0.96
200_E	228_F	1.042	0.96
377_I	382_I	1.036	0.96
221_T	225_E	1.034	0.96
484_R	487_T	1.032	0.96
182_I	192_I	1.030	0.96
253_D	311_A	1.027	0.96
47_I	55_D	1.024	0.96
176_S	180_E	1.022	0.96
475_I	480_A	1.021	0.96
210_T	217_T	1.019	0.96
464_I	471_I	1.019	0.96
169_A	286_M	1.018	0.96
264_K	304_D	1.016	0.96
210_T	220_T	1.012	0.96
282_V	294_M	1.010	0.96
341_L	344_T	1.010	0.96
257_E	307_E	1.008	0.96
263_V	266_S	1.007	0.96
221_T	230_E	1.000	0.95
436_M	446_I	0.998	0.95
183_T	187_K	0.995	0.95
412_P	417_L	0.994	0.95
149_E	152_K	0.989	0.95
281_G	460_S	0.988	0.95
411_G	442_R	0.984	0.95
48_L	59_I	0.980	0.95
104_I	119_L	0.980	0.95
98_L	155_M	0.978	0.95
276_S	311_A	0.974	0.95
374_D	377_I	0.973	0.95
270_V	293_M	0.971	0.95
354_N	357_S	0.970	0.95
98_L	120_A	0.969	0.95
462_R	474_E	0.967	0.95
88_I	145_Q	0.965	0.95
344_T	348_E	0.964	0.94
357_S	411_G	0.964	0.94
105_S	112_Q	0.963	0.94
359_S	362_G	0.959	0.94
105_S	109_G	0.958	0.94
23_F	31_H	0.956	0.94
384_T	389_T	0.956	0.94
293_M	297_L	0.956	0.94
203_F	223_I	0.955	0.94
280_V	474_E	0.953	0.94
262_S	267_F	0.948	0.94
66_T	77_H	0.946	0.94
414_V	447_I	0.946	0.94
244_Y	458_G	0.943	0.94
13_G	19_S	0.942	0.94
477_A	484_R	0.941	0.94
120_A	133_L	0.939	0.94
475_I	479_E	0.937	0.94
465_V	485_I	0.932	0.93
280_V	447_I	0.930	0.93
476_H	480_A	0.930	0.93
475_I	485_I	0.923	0.93
272_F	464_I	0.923	0.93
98_L	148_I	0.923	0.93
6_K	24_Q	0.919	0.93
24_Q	60_S	0.914	0.93
460_S	477_A	0.906	0.92
295_R	300_V	0.904	0.92
467_H	472_S	0.904	0.92
336_K	342_L	0.901	0.92
379_R	438_E	0.895	0.92
124_F	151_A	0.894	0.92
20_G	56_K	0.893	0.92
282_V	293_M	0.889	0.92
141_S	144_Q	0.888	0.92
260_N	305_T	0.883	0.91
269_D	470_R	0.882	0.91
456_I	463_I	0.875	0.91
229_D	487_T	0.871	0.91
424_V	432_I	0.870	0.91
102_K	155_M	0.868	0.91
86_L	168_A	0.867	0.91
46_N	51_L	0.866	0.91
206_C	209_I	0.866	0.91
256_F	261_A	0.863	0.91
270_V	471_I	0.861	0.90
114_R	367_K	0.860	0.90
3_I	48_L	0.857	0.90
161_I	190_V	0.856	0.90
294_M	330_F	0.854	0.90
18_L	47_I	0.852	0.90
30_V	186_K	0.850	0.90
223_I	226_T	0.848	0.90
86_L	149_E	0.846	0.90
435_L	438_E	0.846	0.90
347_R	369_E	0.846	0.90
61_I	79_I	0.843	0.89
317_I	323_A	0.842	0.89
385_A	389_T	0.841	0.89
267_F	293_M	0.839	0.89
142_V	169_A	0.837	0.89
47_I	54_A	0.836	0.89
308_I	317_I	0.836	0.89
30_V	205_I	0.836	0.89
346_I	402_V	0.832	0.89
71_P	74_A	0.832	0.89
95_L	133_L	0.832	0.89
106_S	109_G	0.831	0.89
283_S	456_I	0.830	0.89
260_N	271_S	0.830	0.89
272_F	293_M	0.827	0.89
9_H	19_S	0.826	0.89
391_A	402_V	0.823	0.88
27_P	62_N	0.823	0.88
68_F	74_A	0.820	0.88
371_E	374_D	0.819	0.88
86_L	169_A	0.818	0.88
382_I	405_A	0.817	0.88
95_L	116_M	0.813	0.88
93_T	136_E	0.810	0.88
44_L	212_M	0.809	0.87
46_N	52_H	0.807	0.87
265_G	268_E	0.805	0.87
133_L	136_E	0.803	0.87
85_E	336_K	0.800	0.87
175_I	198_R	0.799	0.87
282_V	447_I	0.798	0.87
317_I	328_L	0.798	0.87
80_A	153_A	0.795	0.87
258_V	297_L	0.795	0.87
276_S	413_K	0.794	0.86
329_G	410_I	0.794	0.86
257_E	312_G	0.793	0.86
53_K	67_Y	0.792	0.86
372_F	409_G	0.791	0.86
23_F	191_S	0.791	0.86
102_K	156_T	0.790	0.86
11_T	19_S	0.786	0.86
347_R	373_V	0.784	0.86
94_V	140_C	0.784	0.86
396_G	400_Q	0.782	0.86
386_S	389_T	0.779	0.85
380_L	405_A	0.776	0.85
25_L	193_V	0.775	0.85
276_S	280_V	0.775	0.85
75_E	156_T	0.774	0.85
99_F	116_M	0.774	0.85
245_P	458_G	0.773	0.85
436_M	440_T	0.772	0.85
416_I	447_I	0.772	0.85
129_V	147_M	0.770	0.85
17_V	385_A	0.770	0.85
419_E	451_S	0.769	0.85
72_K	76_Q	0.769	0.85
3_I	160_V	0.769	0.85
161_I	192_I	0.769	0.85
360_P	365_D	0.767	0.85
261_A	308_I	0.765	0.84
315_T	326_K	0.765	0.84
59_I	68_F	0.764	0.84
26_M	222_N	0.762	0.84
122_E	125_D	0.759	0.84
373_V	387_P	0.759	0.84
389_T	393_H	0.758	0.84
46_N	83_H	0.758	0.84
61_I	159_E	0.757	0.84
73_E	77_H	0.755	0.84
457_L	477_A	0.754	0.84
121_K	134_D	0.750	0.83
472_S	488_L	0.748	0.83
453_L	489_A	0.747	0.83
272_F	447_I	0.746	0.83
330_F	338_E	0.745	0.83
290_R	333_E	0.745	0.83
80_A	156_T	0.741	0.82
342_L	391_A	0.740	0.82
167_T	178_L	0.739	0.82
416_I	449_V	0.739	0.82
351_A	355_L	0.737	0.82
10_K	55_D	0.736	0.82
391_A	403_V	0.733	0.82
61_I	77_H	0.731	0.82
411_G	444_V	0.731	0.82
246_K	249_P	0.731	0.82
475_I	484_R	0.729	0.81
286_M	290_R	0.728	0.81
440_T	445_A	0.728	0.81
145_Q	168_A	0.728	0.81
296_A	301_D	0.727	0.81
439_L	444_V	0.727	0.81
203_F	206_C	0.726	0.81
209_I	221_T	0.725	0.81
471_I	474_E	0.724	0.81
463_I	477_A	0.722	0.81
320_P	323_A	0.721	0.81
251_L	254_K	0.719	0.81
306_G	312_G	0.719	0.81
263_V	296_A	0.713	0.80
370_A	374_D	0.713	0.80
121_K	130_S	0.713	0.80
366_H	369_E	0.712	0.80
424_V	435_L	0.710	0.80
49_T	82_I	0.709	0.80
11_T	17_V	0.709	0.80
322_E	325_K	0.707	0.79
30_V	183_T	0.707	0.79
262_S	305_T	0.706	0.79
310_I	317_I	0.706	0.79
347_R	370_A	0.705	0.79
453_L	456_I	0.701	0.79
354_N	409_G	0.701	0.79
255_V	276_S	0.701	0.79
254_K	309_W	0.700	0.79
439_L	442_R	0.698	0.79
119_L	157_N	0.695	0.78
338_E	403_V	0.695	0.78
171_T	174_E	0.693	0.78
88_I	148_I	0.691	0.78
36_E	238_R	0.690	0.78
199_M	231_V	0.689	0.78
329_G	415_L	0.689	0.78
180_E	204_A	0.686	0.77
86_L	336_K	0.685	0.77
61_I	66_T	0.683	0.77
121_K	132_S	0.678	0.77
258_V	308_I	0.676	0.76
17_V	212_M	0.676	0.76
68_F	75_E	0.675	0.76
273_Y	474_E	0.674	0.76
281_G	456_I	0.674	0.76
208_R	220_T	0.673	0.76
91_E	136_E	0.671	0.76
93_T	117_K	0.670	0.76
398_N	401_K	0.669	0.76
219_D	230_E	0.668	0.75
99_F	119_L	0.668	0.75
346_I	385_A	0.667	0.75
368_R	372_F	0.663	0.75
240_L	244_Y	0.663	0.75
87_N	163_M	0.661	0.75
391_A	406_K	0.661	0.75
163_M	182_I	0.661	0.75
11_T	14_K	0.661	0.75
180_E	184_A	0.658	0.74
255_V	274_V	0.655	0.74
4_E	63_G	0.654	0.74
256_F	414_V	0.653	0.74
279_I	437_N	0.652	0.74
254_K	307_E	0.652	0.74
127_L	181_V	0.652	0.74
6_K	65_E	0.650	0.73
23_F	193_V	0.648	0.73
259_K	271_S	0.647	0.73
15_N	385_A	0.647	0.73
119_L	123_Q	0.645	0.73
142_V	168_A	0.644	0.73
397_G	400_Q	0.644	0.73
49_T	83_H	0.643	0.73
160_V	191_S	0.642	0.73
394_L	400_Q	0.642	0.73
46_N	81_F	0.641	0.72
98_L	123_Q	0.640	0.72
464_I	473_G	0.640	0.72
95_L	104_I	0.639	0.72
14_K	17_V	0.638	0.72
5_M	23_F	0.636	0.72
390_H	393_H	0.635	0.72
345_S	388_E	0.634	0.72
253_D	262_S	0.634	0.72
194_Y	198_R	0.634	0.72
5_M	25_L	0.633	0.72
253_D	275_R	0.633	0.72
163_M	194_Y	0.632	0.71
117_K	120_A	0.631	0.71
359_S	363_L	0.629	0.71
280_V	414_V	0.629	0.71
298_F	407_W	0.628	0.71
433_Y	458_G	0.627	0.71
353_P	410_I	0.626	0.71
457_L	463_I	0.624	0.70
434_T	438_E	0.623	0.70
99_F	120_A	0.623	0.70
124_F	129_V	0.623	0.70
354_N	358_F	0.622	0.70
48_L	162_I	0.618	0.70
196_S	206_C	0.617	0.70
71_P	75_E	0.616	0.69
256_F	274_V	0.614	0.69
203_F	226_T	0.614	0.69
104_I	115_K	0.614	0.69
373_V	377_I	0.613	0.69
331_I	403_V	0.612	0.69
290_R	418_D	0.612	0.69
276_S	279_I	0.612	0.69
322_E	326_K	0.612	0.69
95_L	134_D	0.611	0.69
238_R	244_Y	0.611	0.69
194_Y	202_I	0.609	0.69
13_G	389_T	0.608	0.68
323_A	328_L	0.608	0.68
222_N	226_T	0.608	0.68
282_V	471_I	0.608	0.68
310_I	413_K	0.607	0.68
25_L	31_H	0.604	0.68
248_T	478_R	0.602	0.68
47_I	52_H	0.602	0.68
153_A	163_M	0.602	0.68
203_F	228_F	0.602	0.68
54_A	65_E	0.601	0.68
95_L	120_A	0.601	0.68
23_F	33_L	0.600	0.67
284_G	287_G	0.599	0.67
263_V	301_D	0.599	0.67
288_A	292_E	0.598	0.67
279_I	459_M	0.598	0.67
120_A	123_Q	0.598	0.67
5_M	45_M	0.597	0.67
429_K	452_E	0.595	0.67
83_H	87_N	0.594	0.67
279_I	446_I	0.594	0.67
347_R	387_P	0.594	0.67
417_L	424_V	0.593	0.67
288_A	333_E	0.593	0.67
252_G	276_S	0.592	0.66
317_I	326_K	0.591	0.66
440_T	448_M	0.591	0.66
350_I	405_A	0.591	0.66
412_P	415_L	0.590	0.66
5_M	162_I	0.590	0.66
183_T	205_I	0.590	0.66
85_E	149_E	0.589	0.66
9_H	17_V	0.589	0.66
103_E	111_L	0.589	0.66
366_H	370_A	0.589	0.66
123_Q	128_S	0.588	0.66
143_G	146_Q	0.587	0.66
128_S	180_E	0.587	0.66
395_S	400_Q	0.585	0.66
117_K	133_L	0.584	0.65
200_E	243_R	0.584	0.65
308_I	312_G	0.582	0.65
371_E	378_K	0.582	0.65
346_I	394_L	0.582	0.65
367_K	371_E	0.581	0.65
81_F	162_I	0.581	0.65
127_L	147_M	0.581	0.65
171_T	286_M	0.580	0.65
334_N	422_R	0.579	0.65
131_L	144_Q	0.578	0.65
163_M	202_I	0.576	0.64
291_T	418_D	0.574	0.64
199_M	202_I	0.574	0.64
297_L	308_I	0.574	0.64
424_V	452_E	0.573	0.64
350_I	376_L	0.573	0.64
94_V	148_I	0.572	0.64
247_R	434_T	0.571	0.64
34_M	211_I	0.571	0.64
169_A	172_E	0.570	0.64
154_L	169_A	0.569	0.63
25_L	61_I	0.569	0.63
267_F	304_D	0.568	0.63
70_N	76_Q	0.566	0.63
128_S	177_K	0.566	0.63
254_K	276_S	0.566	0.63
153_A	161_I	0.563	0.63
472_S	489_A	0.563	0.63
241_T	244_Y	0.563	0.63
358_F	361_K	0.563	0.63
418_D	451_S	0.563	0.63
430_R	434_T	0.562	0.62
433_Y	437_N	0.562	0.62
103_E	116_M	0.562	0.62
211_I	219_D	0.561	0.62
26_M	29_E	0.560	0.62
298_F	329_G	0.558	0.62
258_V	293_M	0.557	0.62
395_S	401_K	0.557	0.62
126_K	157_N	0.557	0.62
310_I	327_G	0.556	0.62
457_L	482_Q	0.555	0.61
146_Q	198_R	0.555	0.61
217_T	234_K	0.554	0.61
209_I	231_V	0.554	0.61
42_S	46_N	0.553	0.61
395_S	398_N	0.553	0.61
454_P	482_Q	0.551	0.61
132_S	136_E	0.551	0.61
397_G	401_K	0.550	0.61
87_N	149_E	0.549	0.61
414_V	444_V	0.549	0.61
448_M	460_S	0.547	0.60
194_Y	205_I	0.546	0.60
278_E	462_R	0.546	0.60
220_T	234_K	0.546	0.60
35_G	38_G	0.546	0.60
171_T	175_I	0.546	0.60
397_G	425_D	0.545	0.60
34_M	231_V	0.545	0.60
124_F	132_S	0.544	0.60
457_L	484_R	0.544	0.60
380_L	408_I	0.544	0.60
303_L	316_A	0.543	0.60
251_L	276_S	0.542	0.60
26_M	31_H	0.542	0.60
3_I	153_A	0.542	0.60
298_F	323_A	0.542	0.60
171_T	344_T	0.541	0.60
33_L	45_M	0.541	0.60
211_I	226_T	0.540	0.59
270_V	466_V	0.540	0.59
298_F	330_F	0.539	0.59
214_D	238_R	0.539	0.59
239_E	242_E	0.539	0.59
88_I	161_I	0.538	0.59
143_G	286_M	0.538	0.59
179_F	194_Y	0.538	0.59
104_I	112_Q	0.538	0.59
316_A	322_E	0.538	0.59
45_M	162_I	0.537	0.59
378_K	381_T	0.537	0.59
399_Q	451_S	0.537	0.59
325_K	356_S	0.537	0.59
49_T	143_G	0.536	0.59
415_L	444_V	0.536	0.59
38_G	41_K	0.536	0.59
30_V	187_K	0.535	0.59
185_L	190_V	0.535	0.59
171_T	179_F	0.535	0.59
123_Q	151_A	0.534	0.59
346_I	377_I	0.533	0.58
80_A	86_L	0.533	0.58
200_E	452_E	0.531	0.58
385_A	424_V	0.530	0.58
457_L	485_I	0.530	0.58
87_N	156_T	0.529	0.58
421_T	424_V	0.529	0.58
255_V	260_N	0.527	0.58
17_V	47_I	0.527	0.58
380_L	475_I	0.526	0.57
283_S	453_L	0.526	0.57
328_L	414_V	0.526	0.57
64_N	76_Q	0.526	0.57
35_G	41_K	0.525	0.57
404_I	408_I	0.524	0.57
114_R	117_K	0.524	0.57
446_I	459_M	0.524	0.57
242_E	245_P	0.524	0.57
25_L	210_T	0.524	0.57
355_L	404_I	0.524	0.57
123_Q	127_L	0.524	0.57
29_E	168_A	0.524	0.57
144_Q	148_I	0.524	0.57
394_L	398_N	0.524	0.57
310_I	326_K	0.524	0.57
214_D	451_S	0.523	0.57
86_L	142_V	0.522	0.57
298_F	320_P	0.522	0.57
33_L	389_T	0.522	0.57
397_G	423_G	0.521	0.57
106_S	110_V	0.521	0.57
260_N	309_W	0.521	0.57
198_R	452_E	0.521	0.57
252_G	257_E	0.520	0.57
429_K	433_Y	0.520	0.57
82_I	145_Q	0.520	0.57
322_E	328_L	0.519	0.56
394_L	401_K	0.519	0.56
98_L	204_A	0.519	0.56
34_M	202_I	0.519	0.56
186_K	205_I	0.518	0.56
9_H	21_V	0.518	0.56
430_R	433_Y	0.517	0.56
168_A	198_R	0.517	0.56
211_I	231_V	0.516	0.56
335_R	349_N	0.516	0.56
28_G	33_L	0.515	0.56
324_V	353_P	0.514	0.56
105_S	108_L	0.514	0.56
437_N	441_E	0.513	0.56
332_T	337_D	0.513	0.56
93_T	113_T	0.513	0.56
146_Q	168_A	0.513	0.56
420_P	423_G	0.512	0.55
348_E	369_E	0.512	0.55
22_S	60_S	0.512	0.55
152_K	156_T	0.511	0.55
286_M	451_S	0.511	0.55
396_G	401_K	0.510	0.55
34_M	88_I	0.510	0.55
86_L	137_A	0.510	0.55
105_S	110_V	0.509	0.55
360_P	368_R	0.509	0.55
291_T	330_F	0.508	0.55
26_M	191_S	0.508	0.55
265_G	304_D	0.507	0.55
461_D	477_A	0.507	0.55
351_A	372_F	0.506	0.55
49_T	88_I	0.506	0.55
36_E	236_V	0.505	0.54
227_D	231_V	0.505	0.54
87_N	151_A	0.505	0.54
124_F	127_L	0.503	0.54
467_H	485_I	0.503	0.54
61_I	68_F	0.503	0.54
168_A	422_R	0.503	0.54
157_N	188_N	0.503	0.54
120_A	124_F	0.503	0.54
80_A	163_M	0.503	0.54
329_G	412_P	0.503	0.54
418_D	429_K	0.502	0.54
277_G	284_G	0.502	0.54
154_L	185_L	0.501	0.54
248_T	441_E	0.501	0.54
439_L	446_I	0.500	0.54

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4q9hA	1	0.9655	100	0.402	Contact Map
4finA	2	0.9148	100	0.429	Contact Map
4f4cA	1	0.9473	100	0.441	Contact Map
1yqtA	1	0.9108	100	0.461	Contact Map
3ux8A	2	0.86	100	0.461	Contact Map
3bk7A	1	0.9209	100	0.472	Contact Map
2iw3A	2	0.9006	100	0.478	Contact Map
3ozxA	1	0.8986	100	0.483	Contact Map
3j16B	1	0.9108	100	0.492	Contact Map
3rlfA	2	0.716	100	0.538	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0136 seconds.