ARGJ - BACSU - GREMLIN Contacts

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ARGJ - Arginine biosynthesis bifunctional protein ArgJ

UniProt:	P36843	Sequences: MIQLSEDQIVKVTGDVSSPKGFQAKGVHCGLRYSKKDLGVIISETPAVSAAVYTQSHFQAAPIKVTQDSLKHGPTLKAVIVNSAIANACTGEQGLKDAYTMRESFASQLGIEPELVAVSSTGVIGEHLDMEKIHAGIELLKETPAGSGDFEEAILTTDTVIKQTCYELAIGGKTVTIGGAAKGSGMIHPNMATMLGFVTTDAAIEEKALQKALREITDVSFNQITVDGETSTNDMVLVMANGCAENECLTEDHPDWPVFKKALLLTCEDLAKEIARDGEGATKLIEAQVQGAKNNLDANVIAKKIVGSNLVKTAVYGTDANWGRIIGAIGHSAAQVTAEEVEVYLGGQCLFKNNEPQPFSESIAKEYLEGDEITIVIKMAEGDGNGRAWGCDLTYDYIKINASYRT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	406 (386)
Sequences:	2839 (1758)
Seq/√Len:	89.5

BACSU - ARGJ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
305_I	377_I	4.373	1.00
395_Y	399_K	3.552	1.00
97_D	127_H	3.527	1.00
59_Q	67_Q	3.017	1.00
43_S	241_N	3.013	1.00
100_T	134_H	2.965	1.00
167_E	176_T	2.748	1.00
295_N	384_G	2.744	1.00
215_E	260_K	2.676	1.00
304_K	331_H	2.652	1.00
23_Q	44_E	2.599	1.00
210_Q	214_R	2.556	1.00
269_D	273_E	2.350	1.00
167_E	174_T	2.347	1.00
51_A	237_L	2.345	1.00
223_Q	299_N	2.303	1.00
327_G	331_H	2.303	1.00
396_D	399_K	2.300	1.00
104_S	134_H	2.241	1.00
292_A	298_A	2.234	1.00
93_Q	97_D	2.173	1.00
36_K	152_E	2.141	1.00
119_S	197_F	2.096	1.00
93_Q	127_H	2.091	1.00
92_E	96_K	2.088	1.00
316_Y	395_Y	2.086	1.00
80_I	101_M	2.081	1.00
97_D	130_M	2.071	1.00
39_G	153_A	2.066	1.00
290_Q	376_V	2.025	1.00
349_C	352_K	2.009	1.00
164_T	266_T	1.994	1.00
150_F	180_A	1.982	1.00
77_K	115_L	1.966	1.00
220_S	268_E	1.937	1.00
344_Y	349_C	1.917	1.00
68_D	99_Y	1.909	1.00
301_I	329_I	1.887	1.00
23_Q	42_I	1.882	1.00
223_Q	386_G	1.872	1.00
212_A	263_L	1.869	1.00
177_I	266_T	1.854	1.00
48_V	206_E	1.838	1.00
166_Y	265_L	1.831	1.00
39_G	150_F	1.820	1.00
342_E	380_A	1.814	1.00
216_I	264_L	1.765	1.00
60_A	88_A	1.764	1.00
164_T	269_D	1.761	1.00
348_Q	367_Y	1.732	1.00
198_V	267_C	1.724	1.00
259_F	263_L	1.708	1.00
224_I	275_A	1.696	1.00
325_I	345_L	1.696	1.00
290_Q	378_K	1.681	1.00
361_E	405_R	1.669	1.00
45_T	243_C	1.654	1.00
40_V	105_F	1.653	1.00
188_H	307_G	1.648	1.00
155_L	161_I	1.648	1.00
272_K	284_L	1.648	1.00
216_I	220_S	1.646	1.00
346_G	367_Y	1.632	1.00
329_I	377_I	1.605	1.00
286_E	374_T	1.598	1.00
60_A	233_N	1.597	1.00
311_V	375_I	1.588	1.00
285_I	315_V	1.576	1.00
166_Y	269_D	1.575	1.00
66_T	235_M	1.566	1.00
288_Q	374_T	1.564	1.00
103_E	107_S	1.560	1.00
293_K	297_D	1.560	1.00
59_Q	64_K	1.556	1.00
288_Q	387_R	1.538	1.00
212_A	260_K	1.535	1.00
291_G	378_K	1.527	1.00
294_N	297_D	1.524	1.00
216_I	267_C	1.522	1.00
203_A	246_N	1.507	1.00
315_V	375_I	1.507	1.00
177_I	263_L	1.506	1.00
65_V	102_R	1.503	1.00
78_A	116_V	1.496	1.00
165_C	178_G	1.489	1.00
221_F	267_C	1.482	1.00
78_A	109_L	1.478	1.00
337_T	340_E	1.475	1.00
219_V	264_L	1.469	0.99
320_A	405_R	1.449	0.99
297_D	334_A	1.439	0.99
179_G	270_L	1.437	0.99
399_K	403_S	1.417	0.99
26_G	36_K	1.412	0.99
65_V	98_A	1.410	0.99
143_T	146_G	1.408	0.99
104_S	138_E	1.407	0.99
49_S	239_M	1.397	0.99
69_S	102_R	1.393	0.99
76_L	117_A	1.389	0.99
301_I	379_M	1.388	0.99
403_S	406_T	1.385	0.99
100_T	104_S	1.376	0.99
316_Y	394_T	1.374	0.99
53_Y	70_L	1.374	0.99
103_E	113_P	1.368	0.99
272_K	389_W	1.360	0.99
81_V	197_F	1.359	0.99
213_L	236_V	1.345	0.99
104_S	107_S	1.343	0.99
326_I	343_V	1.342	0.99
204_I	259_F	1.342	0.99
171_G	255_D	1.336	0.99
36_K	149_D	1.330	0.99
306_V	390_G	1.330	0.99
169_A	174_T	1.329	0.99
52_V	217_T	1.329	0.99
168_L	262_A	1.327	0.99
260_K	264_L	1.325	0.99
316_Y	396_D	1.323	0.99
95_L	99_Y	1.321	0.99
344_Y	376_V	1.321	0.99
105_F	116_V	1.319	0.99
22_F	241_N	1.312	0.99
65_V	69_S	1.311	0.99
41_I	199_T	1.303	0.99
363_I	366_E	1.291	0.99
288_Q	385_N	1.287	0.99
287_A	306_V	1.282	0.99
196_G	221_F	1.281	0.99
169_A	172_G	1.280	0.99
123_V	405_R	1.275	0.99
318_T	369_E	1.255	0.98
353_N	380_A	1.242	0.98
24_A	41_I	1.240	0.98
347_G	376_V	1.238	0.98
177_I	262_A	1.238	0.98
108_Q	137_I	1.236	0.98
40_V	141_K	1.223	0.98
108_Q	138_E	1.221	0.98
283_K	318_T	1.220	0.98
238_V	263_L	1.220	0.98
219_V	295_N	1.220	0.98
216_I	260_K	1.220	0.98
205_E	208_A	1.199	0.98
101_M	118_V	1.197	0.98
286_E	389_W	1.196	0.98
300_V	333_A	1.193	0.98
184_S	226_V	1.191	0.98
79_V	239_M	1.188	0.98
160_V	273_E	1.186	0.98
294_N	384_G	1.177	0.98
220_S	264_L	1.176	0.98
55_Q	190_N	1.174	0.98
27_V	140_L	1.173	0.98
119_S	235_M	1.171	0.97
367_Y	370_G	1.170	0.97
100_T	103_E	1.167	0.97
112_E	115_L	1.163	0.97
28_H	36_K	1.158	0.97
101_M	133_I	1.152	0.97
19_P	22_F	1.149	0.97
129_D	132_K	1.148	0.97
268_E	272_K	1.141	0.97
329_I	336_V	1.138	0.97
268_E	389_W	1.134	0.97
177_I	259_F	1.133	0.97
196_G	236_V	1.130	0.97
108_Q	141_K	1.130	0.97
53_Y	63_I	1.125	0.97
117_A	237_L	1.124	0.97
365_K	369_E	1.124	0.97
218_D	299_N	1.116	0.97
204_I	238_V	1.108	0.96
214_R	218_D	1.108	0.96
50_A	210_Q	1.102	0.96
57_H	335_Q	1.097	0.96
178_G	199_T	1.093	0.96
349_C	357_Q	1.092	0.96
342_E	352_K	1.091	0.96
31_L	84_A	1.091	0.96
105_F	137_I	1.082	0.96
152_E	155_L	1.081	0.96
275_A	284_L	1.081	0.96
305_I	329_I	1.080	0.96
173_K	246_N	1.078	0.96
347_G	367_Y	1.077	0.96
224_I	271_A	1.076	0.96
41_I	180_A	1.075	0.96
225_T	307_G	1.071	0.96
48_V	209_L	1.064	0.96
198_V	236_V	1.063	0.96
55_Q	192_A	1.063	0.96
148_G	163_Q	1.062	0.96
213_L	238_V	1.058	0.95
283_K	315_V	1.057	0.95
209_L	238_V	1.053	0.95
288_Q	376_V	1.041	0.95
16_V	178_G	1.041	0.95
290_Q	385_N	1.038	0.95
72_H	115_L	1.038	0.95
101_M	105_F	1.035	0.95
211_K	252_D	1.032	0.95
98_A	118_V	1.031	0.95
299_N	386_G	1.029	0.95
25_K	40_V	1.026	0.95
53_Y	66_T	1.025	0.95
96_K	100_T	1.020	0.94
170_I	173_K	1.019	0.94
299_N	303_K	1.017	0.94
293_K	335_Q	1.015	0.94
32_R	84_A	1.011	0.94
253_H	256_W	1.010	0.94
131_E	135_A	1.005	0.94
208_A	256_W	1.005	0.94
302_A	388_A	1.003	0.94
16_V	199_T	1.001	0.94
22_F	43_S	0.997	0.94
31_L	133_I	0.995	0.94
225_T	306_V	0.984	0.93
194_M	274_I	0.981	0.93
166_Y	262_A	0.981	0.93
109_L	141_K	0.981	0.93
65_V	95_L	0.980	0.93
147_S	180_A	0.980	0.93
316_Y	399_K	0.980	0.93
272_K	286_E	0.977	0.93
89_C	326_I	0.975	0.93
346_G	370_G	0.973	0.93
212_A	256_W	0.972	0.93
272_K	372_E	0.972	0.93
58_F	89_C	0.971	0.93
148_G	152_E	0.970	0.93
63_I	235_M	0.964	0.93
342_E	349_C	0.963	0.93
44_E	243_C	0.961	0.92
297_D	335_Q	0.960	0.92
336_V	381_E	0.958	0.92
360_S	363_I	0.957	0.92
68_D	71_K	0.954	0.92
19_P	176_T	0.953	0.92
101_M	137_I	0.950	0.92
39_G	81_V	0.944	0.92
78_A	111_I	0.936	0.91
166_Y	266_T	0.931	0.91
289_V	302_A	0.929	0.91
351_F	356_P	0.928	0.91
228_G	331_H	0.921	0.91
216_I	263_L	0.921	0.91
80_I	105_F	0.921	0.91
204_I	208_A	0.920	0.91
96_K	99_Y	0.917	0.91
191_M	196_G	0.914	0.90
217_T	222_N	0.913	0.90
264_L	268_E	0.913	0.90
18_S	176_T	0.908	0.90
27_V	38_L	0.905	0.90
399_K	402_A	0.902	0.90
104_S	108_Q	0.902	0.90
343_V	377_I	0.902	0.90
342_E	353_N	0.901	0.90
28_H	33_Y	0.900	0.90
395_Y	403_S	0.899	0.90
320_A	368_L	0.894	0.89
149_D	152_E	0.893	0.89
217_T	236_V	0.889	0.89
40_V	140_L	0.887	0.89
297_D	300_V	0.885	0.89
261_K	265_L	0.885	0.89
281_A	391_C	0.878	0.89
303_K	388_A	0.877	0.89
31_L	129_D	0.875	0.88
146_G	149_D	0.873	0.88
170_I	175_V	0.868	0.88
43_S	239_M	0.867	0.88
52_V	213_L	0.858	0.87
291_G	380_A	0.857	0.87
181_A	274_I	0.856	0.87
340_E	353_N	0.852	0.87
64_K	95_L	0.852	0.87
29_C	38_L	0.850	0.87
283_K	373_I	0.847	0.87
181_A	196_G	0.844	0.87
320_A	403_S	0.843	0.86
93_Q	96_K	0.842	0.86
286_E	387_R	0.842	0.86
344_Y	347_G	0.840	0.86
19_P	199_T	0.838	0.86
282_T	394_T	0.838	0.86
60_A	86_A	0.833	0.86
27_V	36_K	0.831	0.86
155_L	184_S	0.830	0.86
77_K	111_I	0.830	0.86
296_L	300_V	0.828	0.86
204_I	209_L	0.828	0.86
287_A	390_G	0.826	0.85
136_G	140_L	0.825	0.85
212_A	259_F	0.824	0.85
66_T	117_A	0.819	0.85
49_S	76_L	0.818	0.85
168_L	175_V	0.816	0.85
184_S	400_I	0.815	0.85
88_A	233_N	0.813	0.84
38_L	136_G	0.813	0.84
102_R	118_V	0.812	0.84
311_V	315_V	0.811	0.84
65_V	118_V	0.811	0.84
256_W	260_K	0.811	0.84
130_M	136_G	0.811	0.84
352_K	358_P	0.808	0.84
64_K	339_E	0.807	0.84
132_K	135_A	0.806	0.84
164_T	273_E	0.803	0.84
255_D	258_V	0.802	0.84
346_G	373_I	0.802	0.84
320_A	365_K	0.802	0.84
42_I	109_L	0.802	0.84
336_V	341_V	0.800	0.83
125_G	322_W	0.797	0.83
285_I	390_G	0.796	0.83
98_A	101_M	0.795	0.83
253_H	257_P	0.791	0.83
24_A	147_S	0.785	0.82
152_E	161_I	0.782	0.82
230_T	331_H	0.782	0.82
28_H	34_S	0.776	0.82
55_Q	191_M	0.776	0.82
68_D	95_L	0.776	0.82
291_G	384_G	0.775	0.82
85_I	127_H	0.775	0.82
104_S	130_M	0.774	0.81
303_K	306_V	0.770	0.81
75_T	115_L	0.769	0.81
284_L	389_W	0.766	0.81
66_T	237_L	0.765	0.81
24_A	199_T	0.763	0.81
360_S	364_A	0.758	0.80
60_A	90_T	0.757	0.80
72_H	114_E	0.751	0.79
148_G	161_I	0.750	0.79
223_Q	295_N	0.750	0.79
22_F	47_A	0.744	0.79
78_A	105_F	0.744	0.79
159_T	184_S	0.743	0.79
215_E	264_L	0.741	0.79
301_I	304_K	0.740	0.78
49_S	70_L	0.732	0.78
51_A	63_I	0.732	0.78
100_T	130_M	0.731	0.78
276_R	371_D	0.730	0.78
16_V	19_P	0.729	0.77
22_F	199_T	0.727	0.77
18_S	178_G	0.727	0.77
224_I	274_I	0.724	0.77
20_K	243_C	0.724	0.77
28_H	406_T	0.721	0.77
136_G	139_L	0.719	0.76
41_I	197_F	0.718	0.76
163_Q	180_A	0.717	0.76
284_L	372_E	0.717	0.76
139_L	142_E	0.716	0.76
170_I	255_D	0.713	0.76
262_A	266_T	0.708	0.75
63_I	66_T	0.708	0.75
99_Y	113_P	0.707	0.75
43_S	47_A	0.707	0.75
175_V	262_A	0.706	0.75
276_R	372_E	0.706	0.75
187_I	274_I	0.704	0.75
50_A	209_L	0.701	0.75
38_L	140_L	0.700	0.75
229_E	327_G	0.698	0.74
99_Y	103_E	0.697	0.74
203_A	245_E	0.691	0.74
26_G	140_L	0.691	0.74
147_S	199_T	0.690	0.73
284_L	391_C	0.688	0.73
17_S	147_S	0.688	0.73
208_A	211_K	0.685	0.73
265_L	269_D	0.684	0.73
168_L	177_I	0.684	0.73
106_A	116_V	0.682	0.73
173_K	244_A	0.680	0.72
315_V	373_I	0.677	0.72
90_T	356_P	0.677	0.72
352_K	357_Q	0.675	0.72
300_V	334_A	0.675	0.72
208_A	253_H	0.673	0.72
229_E	331_H	0.671	0.71
309_N	313_T	0.671	0.71
348_Q	364_A	0.670	0.71
204_I	263_L	0.666	0.71
126_E	356_P	0.666	0.71
42_I	111_I	0.662	0.70
79_V	237_L	0.662	0.70
130_M	134_H	0.661	0.70
198_V	238_V	0.661	0.70
105_F	141_K	0.660	0.70
200_T	240_A	0.659	0.70
326_I	341_V	0.658	0.70
309_N	393_L	0.657	0.70
135_A	139_L	0.657	0.70
48_V	75_T	0.657	0.70
34_S	406_T	0.655	0.70
226_V	391_C	0.653	0.69
361_E	364_A	0.653	0.69
332_S	335_Q	0.653	0.69
342_E	351_F	0.650	0.69
38_L	138_E	0.650	0.69
215_E	219_V	0.647	0.69
258_V	261_K	0.646	0.68
287_A	302_A	0.646	0.68
344_Y	378_K	0.644	0.68
17_S	178_G	0.643	0.68
165_C	176_T	0.642	0.68
80_I	118_V	0.640	0.68
340_E	354_N	0.639	0.68
390_G	393_L	0.639	0.68
47_A	241_N	0.639	0.68
285_I	375_I	0.637	0.67
211_K	256_W	0.637	0.67
243_C	246_N	0.636	0.67
50_A	213_L	0.635	0.67
22_F	239_M	0.633	0.67
213_L	217_T	0.633	0.67
66_T	118_V	0.627	0.66
18_S	24_A	0.625	0.66
64_K	67_Q	0.625	0.66
41_I	239_M	0.624	0.66
285_I	373_I	0.624	0.66
168_L	202_A	0.621	0.65
169_A	173_K	0.620	0.65
92_E	95_L	0.619	0.65
290_Q	344_Y	0.619	0.65
198_V	266_T	0.618	0.65
268_E	387_R	0.617	0.65
304_K	332_S	0.616	0.65
188_H	303_K	0.615	0.65
51_A	70_L	0.615	0.65
297_D	381_E	0.615	0.65
184_S	396_D	0.615	0.65
24_A	178_G	0.614	0.65
361_E	365_K	0.612	0.64
208_A	251_E	0.612	0.64
18_S	199_T	0.612	0.64
304_K	327_G	0.611	0.64
133_I	136_G	0.611	0.64
61_A	88_A	0.610	0.64
200_T	259_F	0.609	0.64
85_I	123_V	0.608	0.64
36_K	83_S	0.606	0.64
315_V	394_T	0.605	0.63
171_G	246_N	0.605	0.63
306_V	388_A	0.602	0.63
320_A	361_E	0.602	0.63
177_I	198_V	0.601	0.63
147_S	178_G	0.600	0.63
179_G	198_V	0.600	0.63
93_Q	355_E	0.599	0.63
257_P	261_K	0.599	0.63
106_A	112_E	0.598	0.63
211_K	251_E	0.598	0.63
46_P	77_K	0.598	0.63
194_M	236_V	0.597	0.62
191_M	222_N	0.596	0.62
19_P	241_N	0.595	0.62
320_A	402_A	0.594	0.62
26_G	152_E	0.594	0.62
89_C	341_V	0.594	0.62
80_I	140_L	0.590	0.62
44_E	47_A	0.590	0.62
190_N	331_H	0.590	0.62
203_A	242_G	0.589	0.61
92_E	355_E	0.588	0.61
194_M	221_F	0.588	0.61
58_F	336_V	0.587	0.61
204_I	256_W	0.586	0.61
61_A	90_T	0.586	0.61
104_S	137_I	0.585	0.61
67_Q	71_K	0.582	0.60
56_S	327_G	0.581	0.60
190_N	230_T	0.581	0.60
151_E	161_I	0.581	0.60
263_L	266_T	0.580	0.60
316_Y	398_I	0.579	0.60
363_I	367_Y	0.578	0.60
215_E	218_D	0.578	0.60
366_E	370_G	0.577	0.60
90_T	127_H	0.576	0.60
96_K	103_E	0.576	0.60
58_F	341_V	0.575	0.60
40_V	80_I	0.575	0.60
82_N	120_S	0.575	0.60
298_A	386_G	0.573	0.59
281_A	284_L	0.572	0.59
163_Q	178_G	0.571	0.59
86_A	233_N	0.570	0.59
229_E	308_S	0.568	0.59
188_H	388_A	0.566	0.58
65_V	99_Y	0.565	0.58
126_E	405_R	0.565	0.58
17_S	24_A	0.565	0.58
192_A	224_I	0.563	0.58
342_E	378_K	0.563	0.58
175_V	246_N	0.562	0.58
101_M	130_M	0.562	0.58
219_V	223_Q	0.561	0.58
133_I	138_E	0.561	0.58
28_H	83_S	0.560	0.58
272_K	276_R	0.560	0.58
275_A	391_C	0.557	0.57
24_A	150_F	0.557	0.57
299_N	307_G	0.556	0.57
18_S	165_C	0.556	0.57
80_I	136_G	0.553	0.57
293_K	381_E	0.552	0.56
290_Q	380_A	0.548	0.56
26_G	39_G	0.546	0.56
51_A	66_T	0.546	0.56
31_L	132_K	0.545	0.56
223_Q	388_A	0.543	0.55
160_V	276_R	0.542	0.55
218_D	222_N	0.540	0.55
303_K	307_G	0.540	0.55
325_I	350_L	0.538	0.55
286_E	372_E	0.538	0.55
318_T	365_K	0.537	0.54
22_F	379_M	0.537	0.54
147_S	163_Q	0.536	0.54
215_E	256_W	0.535	0.54
203_A	244_A	0.533	0.54
107_S	113_P	0.533	0.54
399_K	406_T	0.533	0.54
64_K	68_D	0.531	0.54
56_S	59_Q	0.530	0.53
338_A	341_V	0.530	0.53
105_F	108_Q	0.530	0.53
378_K	381_E	0.529	0.53
254_P	257_P	0.528	0.53
292_A	379_M	0.526	0.53
73_G	76_L	0.525	0.53
400_I	403_S	0.525	0.53
123_V	320_A	0.525	0.53
105_F	109_L	0.525	0.53
179_G	224_I	0.525	0.53
168_L	173_K	0.525	0.53
19_P	43_S	0.524	0.53
45_T	241_N	0.523	0.53
73_G	114_E	0.519	0.52
213_L	267_C	0.519	0.52
362_S	365_K	0.519	0.52
236_V	274_I	0.518	0.52
47_A	239_M	0.518	0.52
173_K	245_E	0.518	0.52
328_A	331_H	0.517	0.52
228_G	327_G	0.517	0.52
168_L	258_V	0.516	0.52
350_L	356_P	0.516	0.52
19_P	179_G	0.515	0.51
56_S	331_H	0.515	0.51
307_G	388_A	0.513	0.51
295_N	386_G	0.513	0.51
53_Y	235_M	0.513	0.51
188_H	230_T	0.512	0.51
65_V	68_D	0.512	0.51
16_V	24_A	0.511	0.51
42_I	77_K	0.511	0.51
320_A	360_S	0.511	0.51
291_G	379_M	0.510	0.51
219_V	260_K	0.510	0.51
264_L	267_C	0.507	0.50
104_S	133_I	0.507	0.50
127_H	356_P	0.506	0.50
109_L	116_V	0.505	0.50
283_K	394_T	0.504	0.50
93_Q	130_M	0.503	0.50
69_S	113_P	0.501	0.50
272_K	275_A	0.500	0.49
200_T	209_L	0.500	0.49

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vz6A	2	0.9064	100	0.067	Contact Map
1vraB	2	0.5222	100	0.47	Contact Map
2v4iB	2	0.4877	100	0.485	Contact Map
3it4B	2	0.4975	100	0.491	Contact Map
1vraA	1	0.4631	100	0.577	Contact Map
3it4A	1	0.4483	100	0.593	Contact Map
2v4iA	1	0.4187	100	0.6	Contact Map
1y2mA	4	0.1601	34.9	0.98	Contact Map
3axgA	4	0.6207	23.7	0.982	Contact Map
4a34A	5	0.2635	20	0.982	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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