FLIZ - BACSU - GREMLIN Contacts

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FLIZ - Flagellar biosynthetic protein FliZ

UniProt:	P35536	Sequences: MKKSQYFIVFICFFVLFSVHPIAAAAADSDNSTVNEWFQKKDEKTADQSEQKKEKTTKTADETEGAAAPSVSAFDFVKMIFALLFVIVLIYGLVKLMNKRNRLLKPFQYVENIGGTSVGQNRSIQLIKVGKSVLVVGVGETIQLLKEIEDEKEIEVILSQHEEAMSSKIEWQKFVKPLKSSEHQPQQKLPSFSKALKEQLEELKQNRSEGKKKGPRHHE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	219 (199)
Sequences:	165 (146)
Seq/√Len:	10.4

BACSU - FLIZ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
37_W	44_K	3.259	0.96
146_K	153_E	2.953	0.93
122_R	141_T	2.837	0.91
110_V	116_T	2.569	0.86
101_N	120_Q	2.538	0.86
81_F	191_S	2.535	0.86
124_I	145_L	2.495	0.85
122_R	134_L	2.350	0.81
196_L	199_Q	2.169	0.75
82_A	89_L	2.159	0.75
71_V	75_D	2.159	0.75
87_I	142_I	2.140	0.74
124_I	201_E	2.104	0.73
113_I	154_I	2.095	0.72
95_K	136_V	2.071	0.71
132_S	147_E	2.039	0.70
125_Q	138_V	2.024	0.70
83_L	161_H	1.995	0.68
119_G	125_Q	1.940	0.66
118_V	127_I	1.926	0.66
115_G	139_G	1.888	0.64
142_I	200_L	1.871	0.63
115_G	125_Q	1.871	0.63
83_L	116_T	1.870	0.63
136_V	212_K	1.849	0.62
115_G	123_S	1.826	0.61
33_T	118_V	1.814	0.61
18_S	136_V	1.779	0.59
102_R	141_T	1.643	0.53
132_S	135_V	1.623	0.52
90_I	94_V	1.614	0.52
16_L	27_A	1.594	0.51
82_A	111_E	1.590	0.50
135_V	142_I	1.585	0.50
90_I	135_V	1.575	0.50
162_E	171_W	1.565	0.49
134_L	196_L	1.562	0.49
29_S	36_E	1.558	0.49
59_T	174_F	1.556	0.49
91_Y	147_E	1.542	0.48
39_Q	127_I	1.532	0.48
34_V	119_G	1.528	0.48
118_V	199_Q	1.510	0.47
75_D	79_M	1.506	0.46
100_R	179_K	1.484	0.45
42_D	124_I	1.472	0.45
116_T	128_K	1.460	0.44
17_F	28_D	1.453	0.44
31_N	93_L	1.391	0.41
29_S	83_L	1.388	0.41
114_G	125_Q	1.367	0.40
15_V	197_K	1.362	0.40
80_I	121_N	1.350	0.39
18_S	33_T	1.335	0.39
124_I	211_K	1.325	0.38
135_V	174_F	1.318	0.38
130_G	139_G	1.317	0.38
122_R	178_L	1.310	0.38
35_N	78_K	1.308	0.38
86_V	157_I	1.307	0.37
114_G	139_G	1.295	0.37
34_V	128_K	1.290	0.37
101_N	112_N	1.289	0.37
208_S	212_K	1.271	0.36
81_F	88_V	1.264	0.36
134_L	155_E	1.246	0.35
127_I	136_V	1.232	0.34
78_K	131_K	1.209	0.33
83_L	168_K	1.200	0.33
76_F	211_K	1.197	0.33
95_K	125_Q	1.192	0.33
203_L	206_N	1.167	0.32
139_G	158_L	1.162	0.31
78_K	195_A	1.158	0.31
91_Y	150_D	1.157	0.31
135_V	196_L	1.151	0.31
82_A	85_F	1.150	0.31
114_G	196_L	1.148	0.31
115_G	130_G	1.148	0.31
117_S	120_Q	1.133	0.30
110_V	132_S	1.131	0.30
89_L	123_S	1.124	0.30
86_V	89_L	1.111	0.29
203_L	207_R	1.110	0.29
17_F	20_H	1.108	0.29
123_S	138_V	1.107	0.29
81_F	201_E	1.103	0.29
99_K	104_L	1.093	0.29
97_M	134_L	1.091	0.29
172_Q	177_P	1.089	0.29
100_R	117_S	1.069	0.28
123_S	130_G	1.061	0.27
13_F	118_V	1.048	0.27
75_D	207_R	1.030	0.26
87_I	104_L	1.028	0.26
30_D	141_T	1.025	0.26
82_A	145_L	1.025	0.26
72_S	79_M	1.023	0.26
76_F	206_N	1.022	0.26
68_A	87_I	1.021	0.26
47_D	136_V	1.019	0.26
135_V	161_H	1.009	0.26
101_N	124_I	1.003	0.25
135_V	145_L	0.999	0.25
81_F	124_I	0.998	0.25
112_N	115_G	0.996	0.25
119_G	139_G	0.993	0.25
111_E	203_L	0.990	0.25
89_L	139_G	0.985	0.25
76_F	122_R	0.984	0.25
74_F	122_R	0.981	0.25
149_E	180_S	0.979	0.25
48_Q	124_I	0.975	0.24
15_V	21_P	0.971	0.24
105_K	142_I	0.970	0.24
37_W	41_K	0.969	0.24
115_G	128_K	0.967	0.24
110_V	157_I	0.964	0.24
129_V	134_L	0.961	0.24
89_L	130_G	0.960	0.24
34_V	153_E	0.952	0.24
77_V	126_L	0.943	0.23
77_V	140_E	0.941	0.23
115_G	119_G	0.936	0.23
89_L	138_V	0.926	0.23
105_K	127_I	0.926	0.23
81_F	179_K	0.922	0.23
40_K	187_Q	0.922	0.23
125_Q	196_L	0.917	0.22
78_K	101_N	0.915	0.22
34_V	145_L	0.914	0.22
90_I	133_V	0.910	0.22
68_A	73_A	0.908	0.22
36_E	59_T	0.904	0.22
78_K	130_G	0.903	0.22
132_S	153_E	0.898	0.22
9_V	19_V	0.897	0.22
89_L	115_G	0.897	0.22
148_I	204_K	0.896	0.22
88_V	149_E	0.895	0.22
119_G	148_I	0.889	0.22
138_V	195_A	0.888	0.22
103_L	203_L	0.886	0.21
115_G	121_N	0.885	0.21
35_N	39_Q	0.882	0.21
42_D	46_A	0.879	0.21
114_G	138_V	0.873	0.21
147_E	207_R	0.868	0.21
79_M	88_V	0.866	0.21
12_C	97_M	0.864	0.21
110_V	128_K	0.862	0.21
79_M	96_L	0.857	0.21
125_Q	139_G	0.842	0.20
124_I	131_K	0.841	0.20
147_E	150_D	0.840	0.20
117_S	126_L	0.839	0.20
121_N	128_K	0.835	0.20
97_M	206_N	0.832	0.20
72_S	75_D	0.827	0.20
86_V	122_R	0.824	0.20
18_S	40_K	0.823	0.20
32_S	83_L	0.823	0.20
87_I	145_L	0.817	0.19
73_A	95_K	0.805	0.19
80_I	128_K	0.805	0.19
140_E	184_Q	0.802	0.19
142_I	204_K	0.801	0.19
114_G	123_S	0.800	0.19
85_F	164_A	0.798	0.19
93_L	124_I	0.797	0.19
85_F	135_V	0.795	0.19
13_F	18_S	0.794	0.19
105_K	111_E	0.789	0.19
90_I	173_K	0.787	0.19
80_I	167_S	0.786	0.18
15_V	24_A	0.780	0.18
128_K	151_E	0.778	0.18
121_N	161_H	0.776	0.18
121_N	126_L	0.774	0.18
209_E	212_K	0.771	0.18
114_G	119_G	0.771	0.18
98_N	192_F	0.769	0.18
122_R	165_M	0.769	0.18
76_F	107_F	0.761	0.18
36_E	178_L	0.755	0.18
115_G	196_L	0.753	0.18
193_S	198_E	0.753	0.18
108_Q	136_V	0.751	0.18
34_V	115_G	0.748	0.17
33_T	168_K	0.747	0.17
103_L	111_E	0.742	0.17
83_L	110_V	0.742	0.17
130_G	192_F	0.741	0.17
29_S	99_K	0.739	0.17
15_V	113_I	0.738	0.17
11_I	19_V	0.738	0.17
126_L	159_S	0.735	0.17
82_A	128_K	0.731	0.17
134_L	175_V	0.725	0.17
82_A	134_L	0.723	0.17
154_I	157_I	0.720	0.17
159_S	163_E	0.719	0.17
77_V	102_R	0.712	0.16
17_F	35_N	0.709	0.16
109_Y	128_K	0.709	0.16
210_G	213_K	0.698	0.16
140_E	208_S	0.696	0.16
81_F	198_E	0.689	0.16
32_S	79_M	0.688	0.16
45_T	201_E	0.686	0.16
11_I	185_P	0.686	0.16
110_V	161_H	0.683	0.16
47_D	77_V	0.681	0.16
123_S	139_G	0.681	0.16
89_L	192_F	0.678	0.16
126_L	209_E	0.677	0.16
87_I	118_V	0.676	0.16
207_R	211_K	0.671	0.15
112_N	147_E	0.669	0.15
82_A	112_N	0.667	0.15
60_A	184_Q	0.664	0.15
17_F	205_Q	0.660	0.15
116_T	122_R	0.657	0.15
14_F	68_A	0.647	0.15
158_L	174_F	0.645	0.15
82_A	115_G	0.638	0.15
121_N	150_D	0.635	0.15
17_F	201_E	0.634	0.15
88_V	141_T	0.633	0.15
136_V	209_E	0.631	0.15
61_D	177_P	0.631	0.15
48_Q	57_T	0.627	0.14
13_F	39_Q	0.624	0.14
122_R	202_E	0.623	0.14
192_F	195_A	0.622	0.14
95_K	119_G	0.620	0.14
133_V	152_K	0.611	0.14
66_A	171_W	0.610	0.14
9_V	49_S	0.608	0.14
203_L	214_G	0.605	0.14
90_I	213_K	0.605	0.14
75_D	131_K	0.604	0.14
14_F	212_K	0.602	0.14
133_V	213_K	0.601	0.14
127_I	214_G	0.599	0.14
77_V	118_V	0.598	0.14
134_L	214_G	0.596	0.14
84_L	182_E	0.592	0.14
119_G	130_G	0.589	0.14
129_V	139_G	0.583	0.13
83_L	204_K	0.582	0.13
31_N	47_D	0.582	0.13
125_Q	137_G	0.581	0.13
90_I	199_Q	0.579	0.13
11_I	197_K	0.579	0.13
111_E	155_E	0.578	0.13
61_D	176_K	0.576	0.13
83_L	91_Y	0.569	0.13
62_E	212_K	0.567	0.13
15_V	22_I	0.562	0.13
69_P	87_I	0.561	0.13
136_V	200_L	0.560	0.13
60_A	155_E	0.559	0.13
40_K	164_A	0.559	0.13
35_N	110_V	0.558	0.13
134_L	203_L	0.555	0.13
117_S	154_I	0.555	0.13
134_L	141_T	0.552	0.13
75_D	128_K	0.550	0.13
82_A	151_E	0.549	0.13
62_E	136_V	0.549	0.13
36_E	120_Q	0.546	0.13
112_N	207_R	0.544	0.13
17_F	176_K	0.537	0.12
88_V	92_G	0.536	0.12
10_F	61_D	0.535	0.12
94_V	147_E	0.534	0.12
12_C	175_V	0.533	0.12
81_F	178_L	0.533	0.12
134_L	194_K	0.532	0.12
96_L	175_V	0.532	0.12
37_W	40_K	0.531	0.12
29_S	70_S	0.529	0.12
16_L	20_H	0.529	0.12
73_A	116_T	0.526	0.12
139_G	151_E	0.526	0.12
140_E	174_F	0.520	0.12
129_V	157_I	0.518	0.12
78_K	171_W	0.518	0.12
93_L	180_S	0.517	0.12
13_F	201_E	0.510	0.12
95_K	130_G	0.508	0.12
48_Q	194_K	0.505	0.12
87_I	122_R	0.505	0.12
108_Q	118_V	0.503	0.12
13_F	17_F	0.503	0.12
72_S	80_I	0.501	0.12
92_G	203_L	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2kncA	1	0.2329	37.6	0.947	Contact Map
4cgkA	3	0.7671	26.1	0.951	Contact Map
2kv5A	1	0.1507	23.1	0.952	Contact Map
2lx0A	1	0.1461	16.3	0.955	Contact Map
4b19A	1	0.137	12.9	0.957	Contact Map
3j9pD	4	0.6895	12	0.958	Contact Map
2m3eA	1	0.2146	11.9	0.958	Contact Map
1pfiA	7	0.21	11.6	0.958	Contact Map
2ks1B	1	0.2009	10.6	0.959	Contact Map
2mfrA	1	0.2603	10.2	0.959	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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