GREMLIN Database
QOX3 - Quinol oxidase subunit 3
UniProt: P34958 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 204 (183)
Sequences: 5378 (2739)
Seq/√Len: 202.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
73_L109_G3.9231.00
80_T103_T3.3371.00
101_I159_L3.2921.00
92_S95_G3.0891.00
96_V162_L3.0631.00
173_S177_I2.9611.00
83_I99_W2.8641.00
36_V39_S2.7651.00
93_L97_V2.5091.00
104_L152_I2.4191.00
48_L132_A2.4141.00
66_L113_C2.2541.00
87_E95_G2.1881.00
66_L116_N2.0911.00
118_F141_L2.0571.00
112_G116_N2.0161.00
154_W178_S2.0121.00
140_L196_V1.9691.00
68_M72_F1.9651.00
156_T160_I1.9141.00
119_V123_H1.9071.00
111_V149_T1.8941.00
115_I119_V1.8661.00
97_V163_K1.8421.00
80_T102_I1.7741.00
93_L165_R1.7541.00
37_L143_T1.7101.00
155_I178_S1.6871.00
44_T136_G1.6711.00
94_K98_I1.6711.00
73_L113_C1.6411.00
140_L192_I1.6391.00
81_C155_I1.6301.00
84_A96_V1.6241.00
81_C179_S1.5931.00
97_V159_L1.5701.00
158_I178_S1.5621.00
104_L156_T1.5591.00
84_A100_T1.5341.00
31_L180_L1.5321.00
183_H186_D1.5261.00
53_A56_V1.5231.00
97_V162_L1.4651.00
72_F76_I1.4621.00
111_V152_I1.4491.00
70_M113_C1.4311.00
101_I105_L1.4051.00
78_S183_H1.3851.00
65_N69_I1.3661.00
175_I179_S1.3591.00
111_V145_G1.3541.00
98_I102_I1.3361.00
112_G115_I1.3331.00
107_G152_I1.3171.00
79_F83_I1.2921.00
91_G169_P1.2911.00
46_F195_G1.2871.00
80_T106_L1.2701.00
93_L162_L1.2651.00
108_A152_I1.2491.00
83_I87_E1.1911.00
146_T150_I1.1881.00
89_R176_F1.1791.00
98_I101_I1.1711.00
88_M96_V1.1681.00
66_L70_M1.1621.00
95_G99_W1.1491.00
19_T22_L1.1421.00
34_E117_E1.1331.00
149_T153_F1.1261.00
87_E99_W1.1051.00
152_I156_T1.0961.00
49_K52_T1.0911.00
194_T198_L1.0821.00
84_A175_I1.0811.00
84_A162_L1.0781.00
136_G140_L1.0781.00
21_R25_L1.0661.00
20_G24_I1.0661.00
88_M175_I1.0641.00
95_G98_I1.0601.00
70_M192_I1.0551.00
82_G85_V1.0541.00
117_E197_Y1.0481.00
17_S21_R1.0401.00
69_I113_C1.0341.00
86_H90_R1.0221.00
82_G86_H1.0211.00
41_L143_T1.0181.00
45_F49_K1.0011.00
137_F145_G0.9991.00
161_Q174_K0.9901.00
92_S98_I0.9871.00
181_Y185_L0.9871.00
43_A47_V0.9851.00
85_V89_R0.9721.00
153_F157_G0.9660.99
76_I79_F0.9620.99
108_A112_G0.9600.99
18_E21_R0.9600.99
160_I164_K0.9590.99
48_L136_G0.9580.99
73_L106_L0.9560.99
27_F31_L0.9550.99
104_L155_I0.9500.99
99_W102_I0.9480.99
36_V40_T0.9450.99
30_F181_Y0.9430.99
88_M172_S0.9360.99
161_Q166_G0.9320.99
84_A99_W0.9170.99
36_V46_F0.9020.99
16_Q19_T0.8990.99
137_F141_L0.8960.99
114_E194_T0.8940.99
105_L109_G0.8930.99
54_G57_L0.8920.99
127_A134_W0.8880.99
167_L174_K0.8700.99
83_I95_G0.8680.99
41_L140_L0.8670.99
14_E18_E0.8630.99
87_E92_S0.8550.99
80_T99_W0.8540.99
126_A134_W0.8530.99
139_V143_T0.8520.99
150_I154_W0.8480.99
67_V114_E0.8480.99
98_I163_K0.8460.99
17_S20_G0.8440.99
45_F48_L0.8420.99
104_L159_L0.8400.99
124_E127_A0.8330.98
130_T134_W0.8230.98
41_L139_V0.8200.98
150_I181_Y0.8180.98
32_G36_V0.8170.98
116_N123_H0.8110.98
96_V100_T0.8100.98
30_F34_E0.8090.98
126_A130_T0.8060.98
160_I163_K0.8050.98
144_H147_H0.8010.98
26_G30_F0.8000.98
19_T23_N0.7950.98
85_V176_F0.7920.98
94_K97_V0.7780.98
68_M193_F0.7750.98
14_E17_S0.7750.98
58_P61_L0.7750.98
87_E90_R0.7740.98
100_T159_L0.7730.98
182_W189_W0.7720.98
56_V60_E0.7680.97
74_L137_F0.7680.97
159_L163_K0.7540.97
109_G113_C0.7520.97
130_T138_F0.7440.97
15_Y19_T0.7440.97
25_L29_I0.7430.97
118_F138_F0.7380.97
157_G160_I0.7340.97
139_V142_G0.7330.97
45_F55_G0.7330.97
114_E137_F0.7320.97
24_I176_F0.7310.97
51_R190_I0.7300.97
47_V51_R0.7280.96
47_V50_N0.7250.96
28_W32_G0.7170.96
101_I163_K0.7100.96
57_L61_L0.7080.96
59_D62_F0.7010.96
111_V115_I0.6910.95
191_F195_G0.6900.95
58_P131_S0.6880.95
67_V70_M0.6880.95
61_L126_A0.6870.95
32_G35_I0.6870.95
77_S106_L0.6840.95
61_L134_W0.6810.95
50_N199_M0.6800.95
85_V179_S0.6710.94
35_I184_F0.6650.94
117_E185_L0.6630.94
184_F188_V0.6620.94
81_C84_A0.6500.93
108_A149_T0.6480.93
39_S43_A0.6460.93
64_V193_F0.6460.93
100_T175_I0.6450.93
23_N173_S0.6400.93
100_T162_L0.6400.93
85_V175_I0.6390.93
117_E186_D0.6390.93
131_S134_W0.6390.93
101_I160_I0.6380.93
33_A40_T0.6370.93
89_R172_S0.6350.93
64_V68_M0.6350.93
34_E197_Y0.6340.93
114_E145_G0.6340.93
18_E22_L0.6280.92
126_A131_S0.6220.92
64_V67_V0.6180.92
65_N68_M0.6130.91
77_S103_T0.6120.91
27_F177_I0.6110.91
187_V194_T0.6070.91
91_G94_K0.6060.91
94_K112_G0.6050.91
26_G42_F0.6050.91
41_L180_L0.6020.91
57_L126_A0.6010.91
114_E134_W0.5990.90
158_I175_I0.5960.90
14_E25_L0.5930.90
165_R169_P0.5900.90
78_S198_L0.5900.90
143_T148_V0.5880.90
42_F133_F0.5860.89
158_I174_K0.5860.89
151_G182_W0.5860.89
162_L165_R0.5850.89
75_L79_F0.5850.89
70_M117_E0.5820.89
119_V125_G0.5780.89
116_N119_V0.5750.89
77_S186_D0.5750.89
58_P62_F0.5730.88
20_G171_T0.5720.88
195_G199_M0.5720.88
135_S139_V0.5700.88
27_F30_F0.5690.88
14_E56_V0.5650.88
21_R32_G0.5630.88
74_L197_Y0.5630.88
151_G184_F0.5560.87
148_V185_L0.5550.87
78_S186_D0.5540.87
26_G34_E0.5510.86
165_R170_Q0.5500.86
14_E20_G0.5490.86
118_F192_I0.5460.86
75_L167_L0.5430.86
128_L135_S0.5420.85
101_I108_A0.5410.85
77_S185_L0.5370.85
94_K105_L0.5370.85
162_L167_L0.5360.85
86_H89_R0.5340.85
151_G183_H0.5330.85
35_I39_S0.5320.84
35_I188_V0.5300.84
27_F154_W0.5290.84
129_S181_Y0.5270.84
73_L77_S0.5250.84
117_E133_F0.5240.84
149_T152_I0.5220.83
76_I106_L0.5210.83
14_E21_R0.5210.83
45_F196_V0.5210.83
187_V191_F0.5200.83
34_E185_L0.5170.83
96_V175_I0.5150.82
185_L192_I0.5140.82
70_M114_E0.5090.82
92_S116_N0.5090.82
174_K177_I0.5050.81
104_L107_G0.5040.81
30_F74_L0.5040.81
46_F181_Y0.5030.81
127_A130_T0.5020.81
75_L190_I0.5000.81
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1fftC 1 0.9069 100 0.164 Contact Map
1m56C 2 0.9706 100 0.166 Contact Map
1qleC 1 0.9706 100 0.166 Contact Map
2yevA 1 0.9657 100 0.173 Contact Map
1v54C 1 0.9706 100 0.174 Contact Map
2jafA 3 0.8529 15.5 0.949 Contact Map
1xioA 2 0.7843 10.3 0.953 Contact Map
4fbzA 3 0.8529 8 0.955 Contact Map
3qbgA 3 0.8971 7.6 0.955 Contact Map
3ddlA 2 0.8578 6 0.958 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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