YHXA - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YHXA - Uncharacterized aminotransferase YhxA

UniProt:	P33189	Sequences: MEMMGMENIQQNQGLKQKDEQFVWHAMKGAHQADSLIAQKAEGAWVTDTDGRRYLDAMSGLWCVNIGYGRKELAEAAYEQLKELPYYPLTQSHAPAIQLAEKLNEWLGGDYVIFFSNSGSEANETAFKIARQYHLQNGDHSRYKFISRYRAYHGNTLGALSATGQAQRKYKYEPLSQGFLHAAPPDIYRNPDDADTLESANEIDRIMTWELSETIAGVIMEPIITGGGILMPPDGYMKKVEDICRRHGALLICDEVICGFGRTGEPFGFMHYGVKPDIITMAKGITSAYLPLSATAVKRDIFEAYQGEAPYDRFRHVNTFGGSPAACALALKNLQIMEDEQLIQRSRDLGAKLLGELQALREHPAVGDVRGKGLLIGIELVKDKLTKEPADAAKVNQVVAACKEKGLIIGKNGDTVAGYNNVIQLAPPFCLTEEDLSFIVKTVKESFQTI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	450 (385)
Sequences:	20879 (12224)
Seq/√Len:	623.0

ECOLI - PAT BIOA GABT ASTC PUUE ARGD GSA
BACSU - YHXA BIOK YODT OAT GABT GSAB ARGD GSA
HALSA - GSA Q9HHV4 Q9HPQ4
SULSO - Q97VA7 Q97VB5 Q97U15 ARGD GSA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
78_Y	82_K	4.441	1.00
241_E	245_R	3.975	1.00
405_K	445_E	3.883	1.00
45_W	53_R	3.573	1.00
352_K	437_S	3.228	1.00
40_K	47_T	3.111	1.00
102_K	335_Q	3.044	1.00
200_A	239_K	3.027	1.00
352_K	433_E	2.887	1.00
265_E	271_H	2.859	1.00
341_Q	344_Q	2.783	1.00
345_R	349_L	2.716	1.00
72_E	339_D	2.640	1.00
432_T	435_D	2.638	1.00
362_E	444_K	2.533	1.00
75_E	79_E	2.477	1.00
57_A	439_I	2.440	1.00
102_K	338_E	2.421	1.00
332_K	335_Q	2.370	1.00
72_E	336_I	2.334	1.00
45_W	435_D	2.313	1.00
239_K	242_D	2.297	1.00
39_Q	49_T	2.261	1.00
356_E	440_V	2.212	1.00
242_D	246_R	2.203	1.00
70_R	336_I	2.191	1.00
47_T	53_R	2.164	1.00
72_E	332_K	2.109	1.00
348_D	433_E	2.108	1.00
356_E	437_S	2.102	1.00
102_K	331_L	2.074	1.00
144_K	214_T	2.063	1.00
401_A	404_E	2.045	1.00
99_L	330_A	1.979	1.00
74_A	78_Y	1.976	1.00
204_D	246_R	1.975	1.00
438_F	442_T	1.962	1.00
183_A	202_E	1.908	1.00
363_H	444_K	1.883	1.00
354_L	358_Q	1.882	1.00
48_D	52_R	1.881	1.00
351_A	355_G	1.853	1.00
401_A	405_K	1.839	1.00
52_R	406_G	1.837	1.00
407_L	442_T	1.821	1.00
336_I	340_E	1.800	1.00
219_I	252_I	1.777	1.00
299_R	303_E	1.776	1.00
144_K	180_L	1.775	1.00
367_G	381_V	1.773	1.00
45_W	438_F	1.772	1.00
354_L	371_G	1.770	1.00
39_Q	83_E	1.763	1.00
94_A	98_Q	1.752	1.00
356_E	359_A	1.747	1.00
204_D	208_T	1.747	1.00
203_I	240_V	1.713	1.00
116_S	293_S	1.692	1.00
106_W	338_E	1.684	1.00
101_E	105_E	1.638	1.00
123_N	280_T	1.636	1.00
363_H	448_Q	1.627	1.00
77_A	329_L	1.608	1.00
77_A	81_L	1.596	1.00
265_E	347_R	1.589	1.00
98_Q	331_L	1.580	1.00
102_K	105_E	1.579	1.00
354_L	376_I	1.577	1.00
401_A	446_S	1.565	1.00
358_Q	361_R	1.563	1.00
42_E	71_K	1.559	1.00
149_Y	183_A	1.557	1.00
220_M	240_V	1.555	1.00
44_A	435_D	1.528	1.00
349_L	352_K	1.523	1.00
207_M	249_A	1.521	1.00
253_C	269_F	1.514	1.00
286_T	292_L	1.514	1.00
112_V	299_R	1.514	1.00
281_M	294_A	1.508	1.00
201_N	205_R	1.505	1.00
290_L	326_A	1.504	1.00
79_E	83_E	1.497	1.00
218_V	244_C	1.496	1.00
204_D	239_K	1.491	1.00
349_L	436_L	1.474	1.00
125_T	295_T	1.456	1.00
235_G	238_K	1.451	1.00
402_C	409_I	1.449	1.00
53_R	438_F	1.444	1.00
146_I	215_I	1.439	1.00
44_A	430_C	1.438	1.00
281_M	296_A	1.437	1.00
133_Y	301_I	1.435	1.00
71_K	75_E	1.407	1.00
241_E	244_C	1.403	1.00
145_F	217_G	1.397	1.00
104_N	113_I	1.397	1.00
241_E	251_L	1.395	1.00
405_K	446_S	1.395	1.00
345_R	348_D	1.394	1.00
113_I	296_A	1.373	1.00
107_L	296_A	1.369	1.00
331_L	335_Q	1.367	1.00
266_P	270_M	1.365	1.00
147_S	181_H	1.351	1.00
444_K	448_Q	1.345	1.00
360_L	444_K	1.344	1.00
127_F	145_F	1.344	1.00
100_A	115_F	1.333	1.00
349_L	433_E	1.333	1.00
332_K	336_I	1.331	1.00
352_K	356_E	1.330	1.00
185_P	233_P	1.330	1.00
265_E	270_M	1.328	1.00
75_E	78_Y	1.323	1.00
271_H	372_K	1.321	1.00
220_M	237_M	1.318	1.00
148_R	236_Y	1.318	1.00
356_E	444_K	1.318	1.00
208_T	247_H	1.316	1.00
48_D	54_Y	1.314	1.00
133_Y	304_A	1.313	1.00
201_N	204_D	1.309	1.00
356_E	441_K	1.307	1.00
344_Q	348_D	1.307	1.00
292_L	327_C	1.297	1.00
126_A	280_T	1.288	1.00
105_E	338_E	1.283	1.00
42_E	69_G	1.282	1.00
123_N	219_I	1.276	1.00
269_F	279_I	1.275	1.00
431_L	436_L	1.272	1.00
275_K	298_K	1.271	1.00
278_I	297_V	1.268	1.00
360_L	440_V	1.266	1.00
66_I	336_I	1.251	1.00
70_R	340_E	1.251	1.00
218_V	240_V	1.247	1.00
130_A	252_I	1.245	1.00
74_A	82_K	1.232	1.00
435_D	438_F	1.232	1.00
76_A	332_K	1.229	1.00
40_K	83_E	1.229	1.00
69_G	74_A	1.221	1.00
74_A	81_L	1.219	1.00
272_Y	372_K	1.214	1.00
204_D	243_I	1.211	1.00
116_S	295_T	1.209	1.00
38_A	46_V	1.208	1.00
335_Q	339_D	1.203	1.00
285_I	292_L	1.202	1.00
98_Q	335_Q	1.202	1.00
292_L	330_A	1.192	1.00
238_K	242_D	1.185	1.00
347_R	351_A	1.175	1.00
235_G	272_Y	1.175	1.00
77_A	325_A	1.160	1.00
441_K	445_E	1.157	1.00
134_H	216_A	1.156	1.00
162_A	179_F	1.153	1.00
261_G	343_I	1.149	1.00
402_C	446_S	1.148	1.00
115_F	327_C	1.142	1.00
285_I	294_A	1.137	1.00
112_V	303_E	1.135	1.00
108_G	111_Y	1.132	1.00
182_A	206_I	1.132	1.00
405_K	442_T	1.124	1.00
78_Y	81_L	1.124	1.00
250_L	301_I	1.121	1.00
267_F	281_M	1.115	1.00
402_C	442_T	1.108	1.00
238_K	273_G	1.101	1.00
162_A	219_I	1.096	1.00
200_A	243_I	1.094	1.00
278_I	295_T	1.093	1.00
253_C	274_V	1.089	1.00
37_I	49_T	1.086	1.00
438_F	441_K	1.084	1.00
44_A	55_L	1.077	1.00
45_W	55_L	1.075	1.00
202_E	205_R	1.071	1.00
336_I	339_D	1.066	1.00
39_Q	94_A	1.046	1.00
433_E	437_S	1.038	1.00
102_K	106_W	1.037	1.00
42_E	53_R	1.037	1.00
437_S	441_K	1.029	1.00
39_Q	47_T	1.027	1.00
407_L	439_I	1.024	1.00
72_E	335_Q	1.021	1.00
122_A	280_T	1.018	1.00
42_E	47_T	1.016	1.00
142_R	248_G	1.009	1.00
99_L	331_L	1.008	1.00
287_S	333_N	1.006	1.00
397_Q	401_A	1.003	1.00
242_D	245_R	0.997	1.00
244_C	249_A	0.996	1.00
120_S	159_A	0.995	1.00
129_I	295_T	0.994	1.00
355_G	359_A	0.991	1.00
234_D	238_K	0.987	1.00
402_C	407_L	0.985	1.00
143_Y	214_T	0.982	1.00
39_Q	51_G	0.982	1.00
204_D	242_D	0.979	1.00
199_S	202_E	0.979	1.00
204_D	247_H	0.976	1.00
106_W	266_P	0.976	1.00
222_P	253_C	0.972	1.00
344_Q	347_R	0.969	1.00
367_G	379_E	0.958	1.00
260_F	337_M	0.953	1.00
217_G	252_I	0.951	1.00
75_E	82_K	0.950	1.00
264_G	270_M	0.950	1.00
147_S	219_I	0.943	1.00
65_N	284_G	0.942	1.00
79_E	328_A	0.940	1.00
66_I	333_N	0.939	1.00
343_I	346_S	0.935	1.00
400_A	404_E	0.929	1.00
37_I	97_I	0.927	1.00
134_H	141_S	0.927	1.00
55_L	435_D	0.926	1.00
434_E	437_S	0.921	1.00
205_R	210_E	0.921	1.00
237_M	272_Y	0.921	1.00
196_T	199_S	0.920	1.00
350_G	354_L	0.919	1.00
379_E	421_N	0.918	1.00
109_G	279_I	0.917	1.00
223_I	372_K	0.917	1.00
72_E	75_E	0.916	1.00
196_T	202_E	0.913	1.00
126_A	252_I	0.911	1.00
127_F	162_A	0.910	1.00
355_G	358_Q	0.908	1.00
377_G	422_V	0.905	1.00
66_I	73_L	0.898	1.00
129_I	297_V	0.898	1.00
235_G	239_K	0.896	1.00
240_V	251_L	0.892	1.00
231_M	372_K	0.891	1.00
148_R	232_P	0.888	1.00
359_A	444_K	0.886	1.00
111_Y	299_R	0.885	1.00
271_H	347_R	0.885	1.00
328_A	332_K	0.884	1.00
73_L	329_L	0.884	1.00
55_L	438_F	0.883	1.00
345_R	433_E	0.881	1.00
133_Y	250_L	0.881	1.00
110_D	275_K	0.878	1.00
359_A	362_E	0.878	1.00
106_W	334_L	0.877	1.00
144_K	215_I	0.875	1.00
337_M	343_I	0.873	1.00
95_P	328_A	0.872	1.00
57_A	431_L	0.871	1.00
143_Y	178_G	0.871	1.00
337_M	342_L	0.870	1.00
49_T	94_A	0.867	1.00
108_G	269_F	0.863	1.00
148_R	184_P	0.863	1.00
212_S	247_H	0.862	1.00
161_S	176_S	0.858	1.00
245_R	275_K	0.857	1.00
207_M	215_I	0.855	1.00
120_S	156_T	0.854	1.00
79_E	82_K	0.853	1.00
361_R	366_V	0.849	1.00
130_A	217_G	0.848	1.00
243_I	247_H	0.845	1.00
184_P	232_P	0.843	1.00
44_A	432_T	0.840	1.00
144_K	208_T	0.840	1.00
396_N	400_A	0.839	1.00
362_E	448_Q	0.839	1.00
64_V	287_S	0.834	1.00
98_Q	102_K	0.827	1.00
266_P	343_I	0.827	1.00
141_S	214_T	0.817	1.00
368_D	379_E	0.816	1.00
431_L	439_I	0.816	1.00
258_C	375_L	0.810	1.00
72_E	76_A	0.809	1.00
342_L	346_S	0.809	1.00
343_I	347_R	0.807	1.00
202_E	206_I	0.803	1.00
130_A	250_L	0.799	1.00
95_P	331_L	0.798	1.00
132_Q	315_R	0.797	1.00
348_D	352_K	0.791	1.00
103_L	296_A	0.787	1.00
374_L	431_L	0.785	1.00
55_L	439_I	0.783	1.00
352_K	355_G	0.779	1.00
244_C	251_L	0.778	1.00
356_E	436_L	0.777	1.00
370_R	379_E	0.777	1.00
211_L	214_T	0.776	1.00
113_I	294_A	0.776	1.00
180_L	206_I	0.774	1.00
260_F	334_L	0.773	1.00
197_L	239_K	0.772	1.00
183_A	199_S	0.772	1.00
239_K	243_I	0.770	1.00
197_L	201_N	0.769	1.00
290_L	325_A	0.769	1.00
399_V	411_K	0.766	1.00
95_P	98_Q	0.762	1.00
222_P	237_M	0.758	1.00
369_V	376_I	0.756	1.00
375_L	426_A	0.755	1.00
43_G	430_C	0.755	1.00
269_F	274_V	0.754	1.00
99_L	327_C	0.753	1.00
134_H	248_G	0.752	1.00
62_W	426_A	0.743	1.00
425_L	443_V	0.741	1.00
207_M	243_I	0.739	1.00
241_E	274_V	0.737	1.00
267_F	279_I	0.737	1.00
349_L	374_L	0.730	1.00
398_V	443_V	0.729	1.00
371_G	376_I	0.727	1.00
130_A	278_I	0.726	1.00
260_F	281_M	0.725	1.00
95_P	327_C	0.724	1.00
318_N	321_G	0.722	1.00
248_G	300_D	0.722	1.00
263_T	271_H	0.722	1.00
55_L	407_L	0.722	1.00
76_A	329_L	0.722	1.00
220_M	251_L	0.720	1.00
300_D	303_E	0.719	1.00
260_F	266_P	0.718	1.00
218_V	249_A	0.715	1.00
182_A	185_P	0.715	1.00
44_A	428_P	0.714	1.00
238_K	272_Y	0.714	1.00
126_A	278_I	0.713	1.00
397_Q	400_A	0.707	1.00
261_G	337_M	0.707	1.00
116_S	122_A	0.706	1.00
266_P	338_E	0.704	1.00
346_S	350_G	0.702	1.00
127_F	219_I	0.701	1.00
25_H	28_K	0.700	1.00
298_K	301_I	0.699	1.00
196_T	200_A	0.699	1.00
306_Q	315_R	0.698	1.00
129_I	305_Y	0.698	1.00
215_I	249_A	0.695	1.00
57_A	407_L	0.692	1.00
348_D	351_A	0.692	1.00
117_N	121_E	0.691	1.00
92_S	97_I	0.689	1.00
109_G	275_K	0.688	1.00
93_H	96_A	0.688	1.00
269_F	276_P	0.687	1.00
123_N	159_A	0.685	1.00
203_I	218_V	0.685	1.00
52_R	404_E	0.684	1.00
223_I	263_T	0.683	1.00
225_T	257_I	0.682	1.00
58_M	410_G	0.682	1.00
80_Q	83_E	0.680	1.00
158_G	176_S	0.680	1.00
434_E	438_F	0.676	1.00
83_E	94_A	0.675	1.00
281_M	285_I	0.674	1.00
379_E	422_V	0.672	1.00
361_R	368_D	0.670	1.00
73_L	287_S	0.669	1.00
251_L	274_V	0.668	1.00
380_L	398_V	0.667	1.00
360_L	363_H	0.667	1.00
106_W	267_F	0.664	1.00
102_K	334_L	0.664	1.00
439_I	442_T	0.664	1.00
180_L	183_A	0.664	1.00
234_D	272_Y	0.663	1.00
96_A	100_A	0.661	1.00
38_A	41_A	0.659	1.00
252_I	278_I	0.658	1.00
382_K	394_K	0.656	1.00
95_P	99_L	0.656	1.00
234_D	372_K	0.656	1.00
231_M	371_G	0.655	1.00
245_R	251_L	0.653	1.00
207_M	247_H	0.652	1.00
345_R	432_T	0.651	1.00
431_L	435_D	0.650	1.00
83_E	95_P	0.649	1.00
260_F	285_I	0.649	1.00
232_P	235_G	0.647	1.00
44_A	431_L	0.646	1.00
398_V	402_C	0.645	1.00
118_S	121_E	0.645	1.00
352_K	436_L	0.643	1.00
398_V	446_S	0.643	1.00
237_M	253_C	0.642	1.00
351_A	354_L	0.641	1.00
381_V	384_K	0.639	1.00
380_L	447_F	0.639	1.00
81_L	325_A	0.639	1.00
224_I	227_G	0.639	1.00
350_G	371_G	0.639	1.00
205_R	208_T	0.639	1.00
37_I	92_S	0.639	1.00
346_S	429_F	0.637	1.00
110_D	298_K	0.636	1.00
76_A	79_E	0.636	1.00
80_Q	95_P	0.636	1.00
224_I	375_L	0.633	1.00
369_V	378_I	0.632	1.00
97_I	101_E	0.632	1.00
402_C	443_V	0.632	1.00
129_I	278_I	0.631	1.00
243_I	246_R	0.631	1.00
400_A	403_K	0.631	1.00
109_G	269_F	0.630	1.00
128_K	316_H	0.629	1.00
107_L	279_I	0.628	1.00
59_S	426_A	0.628	1.00
440_V	444_K	0.627	1.00
106_W	265_E	0.626	1.00
107_L	267_F	0.625	1.00
365_A	381_V	0.625	1.00
442_T	446_S	0.624	1.00
182_A	203_I	0.624	1.00
256_V	280_T	0.624	1.00
69_G	81_L	0.621	1.00
133_Y	300_D	0.617	1.00
66_I	342_L	0.617	1.00
108_G	275_K	0.616	1.00
144_K	211_L	0.615	1.00
393_A	397_Q	0.615	1.00
99_L	292_L	0.615	1.00
144_K	178_G	0.614	1.00
200_A	204_D	0.612	1.00
119_G	256_V	0.612	1.00
53_R	442_T	0.611	1.00
107_L	111_Y	0.611	1.00
353_L	440_V	0.611	1.00
297_V	302_F	0.611	1.00
71_K	82_K	0.610	1.00
201_N	239_K	0.610	1.00
423_I	443_V	0.609	1.00
41_A	84_L	0.608	1.00
394_K	397_Q	0.607	1.00
407_L	438_F	0.606	1.00
282_A	293_S	0.605	1.00
301_I	304_A	0.605	1.00
131_R	174_P	0.605	1.00
149_Y	181_H	0.604	1.00
46_V	408_I	0.603	1.00
425_L	439_I	0.602	1.00
81_L	329_L	0.602	1.00
146_I	203_I	0.601	1.00
108_G	270_M	0.600	1.00
59_S	428_P	0.600	1.00
346_S	374_L	0.599	1.00
144_K	210_E	0.595	1.00
142_R	214_T	0.594	1.00
329_L	332_K	0.593	1.00
58_M	408_I	0.593	1.00
142_R	249_A	0.592	1.00
222_P	258_C	0.592	1.00
148_R	220_M	0.591	1.00
65_N	429_F	0.589	1.00
378_I	443_V	0.589	1.00
356_E	360_L	0.588	1.00
131_R	157_L	0.587	1.00
442_T	445_E	0.587	1.00
360_L	441_K	0.586	1.00
363_H	447_F	0.584	1.00
347_R	350_G	0.582	1.00
245_R	300_D	0.581	1.00
370_R	422_V	0.581	1.00
353_L	376_I	0.580	1.00
398_V	423_I	0.580	1.00
182_A	202_E	0.580	1.00
349_L	431_L	0.579	1.00
125_T	316_H	0.578	1.00
361_R	369_V	0.578	1.00
76_A	335_Q	0.578	1.00
38_A	91_Q	0.575	1.00
99_L	115_F	0.573	1.00
36_L	39_Q	0.572	1.00
238_K	241_E	0.569	1.00
148_R	182_A	0.569	1.00
353_L	436_L	0.569	1.00
55_L	431_L	0.568	1.00
370_R	377_G	0.568	1.00
278_I	301_I	0.568	1.00
225_T	375_L	0.566	1.00
98_Q	101_E	0.566	1.00
338_E	341_Q	0.566	1.00
395_V	411_K	0.565	1.00
42_E	45_W	0.565	1.00
410_G	413_G	0.565	1.00
399_V	403_K	0.564	1.00
80_Q	84_L	0.563	1.00
28_K	31_H	0.562	1.00
41_A	46_V	0.561	1.00
164_G	181_H	0.560	1.00
152_Y	155_N	0.559	1.00
366_V	447_F	0.556	1.00
260_F	267_F	0.556	1.00
208_T	214_T	0.554	1.00
134_H	142_R	0.553	1.00
36_L	403_K	0.553	1.00
208_T	246_R	0.551	1.00
81_L	85_P	0.550	1.00
104_N	109_G	0.549	1.00
65_N	337_M	0.546	1.00
127_F	158_G	0.545	0.99
437_S	440_V	0.545	0.99
146_I	182_A	0.543	0.99
38_A	84_L	0.543	0.99
303_E	306_Q	0.542	0.99
220_M	253_C	0.541	0.99
39_Q	42_E	0.538	0.99
203_I	243_I	0.537	0.99
146_I	206_I	0.536	0.99
279_I	296_A	0.536	0.99
227_G	230_L	0.536	0.99
166_A	170_Y	0.535	0.99
37_I	94_A	0.534	0.99
203_I	239_K	0.534	0.99
79_E	332_K	0.534	0.99
240_V	249_A	0.532	0.99
439_I	443_V	0.532	0.99
26_A	31_H	0.531	0.99
349_L	432_T	0.531	0.99
234_D	273_G	0.529	0.99
104_N	296_A	0.529	0.99
147_S	179_F	0.528	0.99
213_E	247_H	0.528	0.99
203_I	207_M	0.527	0.99
27_M	31_H	0.526	0.99
352_K	440_V	0.526	0.99
116_S	121_E	0.526	0.99
257_I	375_L	0.525	0.99
323_S	326_A	0.524	0.99
436_L	440_V	0.524	0.99
222_P	269_F	0.522	0.99
334_L	338_E	0.521	0.99
443_V	447_F	0.520	0.99
266_P	337_M	0.519	0.99
73_L	333_N	0.518	0.99
150_R	227_G	0.517	0.99
148_R	240_V	0.517	0.99
428_P	431_L	0.517	0.99
406_G	442_T	0.517	0.99
436_L	439_I	0.516	0.99
340_E	345_R	0.515	0.99
107_L	113_I	0.515	0.99
166_A	169_K	0.511	0.99
232_P	237_M	0.510	0.99
104_N	111_Y	0.510	0.99
250_L	278_I	0.509	0.99
91_Q	408_I	0.508	0.99
107_L	281_M	0.506	0.99
71_K	74_A	0.506	0.99
236_Y	240_V	0.503	0.99
276_P	279_I	0.503	0.99
241_E	253_C	0.503	0.99
353_L	439_I	0.502	0.99
266_P	334_L	0.502	0.99
268_G	272_Y	0.501	0.99
238_K	274_V	0.500	0.99
73_L	332_K	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4a0gA	2	0.9533	100	0.374	Contact Map
4e3qA	3	0.96	100	0.382	Contact Map
4atqA	7	0.9511	100	0.388	Contact Map
3hmuA	2	0.9622	100	0.391	Contact Map
3oksA	2	0.9489	100	0.392	Contact Map
4uoxA	3	0.9267	100	0.392	Contact Map
1z7dA	2	0.8356	100	0.394	Contact Map
2epjA	2	0.8889	100	0.402	Contact Map
4ffcA	4	0.9444	100	0.404	Contact Map
3i5tA	2	0.9444	100	0.405	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0124 seconds.