GREMLIN Database
YLXQ - Probable ribosomal protein YlxQ
UniProt: P32729 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 100 (96)
Sequences: 762 (601)
Seq/√Len: 61.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
35_A85_A3.6531.00
68_S71_V3.1151.00
94_K97_S3.0891.00
18_K88_D2.7861.00
69_R82_V2.3751.00
14_N17_R2.1551.00
50_K54_D2.1511.00
49_A65_K2.0591.00
94_K98_L2.0301.00
27_I55_K1.9151.00
27_I52_V1.7951.00
7_F67_E1.6890.99
89_Q93_N1.6830.99
14_N78_K1.5900.99
12_L91_F1.5480.99
44_A48_T1.5290.98
21_S81_R1.5280.98
6_W95_L1.5270.98
38_V56_C1.5230.98
73_G80_A1.5100.98
14_N19_V1.4820.98
69_R73_G1.4670.98
36_K89_Q1.4020.97
29_E87_T1.3960.97
45_S48_T1.3770.97
19_V76_I1.3590.97
30_I55_K1.3560.97
55_K59_Y1.3000.96
39_L95_L1.2920.96
9_L98_L1.2710.95
9_L94_K1.2540.95
26_V83_V1.2500.95
56_C63_Y1.2490.95
53_T63_Y1.2460.95
14_N76_I1.2350.94
35_A87_T1.2300.94
23_E81_R1.2100.94
76_I84_V1.2050.94
53_T65_K1.1970.93
27_I31_R1.1410.92
52_V83_V1.1400.92
29_E34_R1.1400.92
40_L63_Y1.1150.91
40_L49_A1.1050.90
55_K58_Y1.0980.90
9_L95_L1.0960.90
6_W66_V1.0750.89
42_E65_K1.0700.89
4_M66_V1.0670.89
20_V87_T1.0590.88
28_K32_N1.0560.88
40_L52_V1.0510.88
54_D57_N1.0470.88
13_A19_V1.0450.88
33_A61_V0.9870.84
54_D59_Y0.9860.84
54_D58_Y0.9700.83
4_M67_E0.9560.82
29_E85_A0.9470.82
46_S49_A0.9440.82
30_I56_C0.9420.81
20_V85_A0.9220.80
26_V38_V0.9210.80
13_A91_F0.8950.78
25_L52_V0.8700.76
37_L64_K0.8650.76
31_R59_Y0.8640.75
64_K99_L0.8590.75
69_R80_A0.8520.74
50_K58_Y0.8500.74
11_G75_S0.8470.74
23_E54_D0.8460.74
39_L66_V0.8120.71
30_I59_Y0.8110.71
12_L15_R0.8080.70
53_T57_N0.8060.70
52_V69_R0.7960.69
64_K96_I0.7860.68
61_V72_L0.7850.68
46_S53_T0.7800.68
24_D83_V0.7770.67
30_I35_A0.7650.66
10_L95_L0.7620.66
16_A90_G0.7580.66
28_K31_R0.7480.65
7_F39_L0.7470.64
31_R58_Y0.7110.61
73_G79_E0.7090.60
12_L75_S0.7090.60
4_M7_F0.6970.59
26_V85_A0.6960.59
35_A38_V0.6930.59
7_F71_V0.6890.58
42_E67_E0.6850.58
13_A86_V0.6800.57
39_L93_N0.6710.56
24_D52_V0.6690.56
27_I82_V0.6660.56
42_E68_S0.6630.55
14_N21_S0.6520.54
10_L99_L0.6440.53
50_K55_K0.6440.53
6_W9_L0.6420.53
19_V86_V0.6340.52
47_N51_K0.6260.51
41_T73_G0.6160.50
37_L92_A0.6160.50
49_A53_T0.6160.50
93_N96_I0.6050.49
38_V54_D0.6050.49
23_E55_K0.5960.48
6_W67_E0.5940.47
10_L19_V0.5910.47
40_L44_A0.5900.47
21_S45_S0.5860.47
42_E66_V0.5820.46
39_L84_V0.5820.46
46_S65_K0.5780.46
24_D27_I0.5730.45
23_E58_Y0.5720.45
9_L23_E0.5710.45
43_D92_A0.5700.45
49_A70_A0.5670.44
30_I85_A0.5590.44
10_L44_A0.5550.43
11_G18_K0.5430.42
9_L91_F0.5420.42
10_L76_I0.5360.41
44_A47_N0.5350.41
30_I50_K0.5300.40
15_R92_A0.5270.40
47_N71_V0.5240.40
5_E98_L0.5240.40
16_A91_F0.5230.40
24_D28_K0.5210.39
30_I53_T0.5200.39
61_V89_Q0.5190.39
74_R79_E0.5180.39
15_R31_R0.5100.38
51_K54_D0.5100.38
26_V96_I0.5080.38
73_G82_V0.5040.38
32_N91_F0.5030.37
32_N42_E0.5000.37
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3on1A 1 0.98 99.9 0.298 Contact Map
3v7qA 1 0.97 99.9 0.301 Contact Map
3cpqA 2 0.95 99.9 0.358 Contact Map
3u5ec 1 0.95 99.9 0.372 Contact Map
3j61c 1 1 99.9 0.379 Contact Map
3zf7g 1 0.94 99.9 0.385 Contact Map
1w41A 1 0.97 99.9 0.391 Contact Map
1vx76 1 0.96 99.9 0.392 Contact Map
4a18G 1 0.94 99.9 0.392 Contact Map
2fc3A 1 1 99.9 0.394 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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