HEPS1 - BACSU - GREMLIN Contacts

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HEPS1 - Heptaprenyl diphosphate synthase component 1

UniProt:	P31112	Sequences: MQDIYGTLANLNTKLKQKLSHPYLAKHISAPKIDEDKLLLFHALFEEADIKNNDRENYIVTAMLVQSALDTHDEVTTARVIKRDENKNRQLTVLAGDYFSGLYYSLLSEMKDIYMIRTLATAIKEINEHKIRLYDRSFKDENDFFESVGIVESALFHRVAEHFNLPRWKKLSSDFFVFKRLMNGNDAFLDVIGSFIQLGKTKEEILEDCFKKAKNSIESLLPLNSPIQNILINRLKTISQDQTYHQKVEEG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	251 (233)
Sequences:	204 (167)
Seq/√Len:	10.9

BACSU - HEPS1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
62_A	119_L	4.734	1.00
64_L	98_Y	3.343	0.97
61_T	120_A	3.150	0.96
73_D	196_I	2.934	0.94
70_D	127_N	2.762	0.91
18_K	61_T	2.661	0.90
66_Q	70_D	2.647	0.89
101_G	131_I	2.612	0.89
19_L	175_F	2.492	0.86
36_D	179_K	2.369	0.83
42_H	105_S	2.351	0.83
166_P	192_I	2.184	0.78
63_M	120_A	2.086	0.74
31_P	98_Y	2.051	0.73
66_Q	71_T	1.969	0.70
73_D	118_T	1.901	0.67
41_F	119_L	1.891	0.66
11_L	101_G	1.858	0.65
44_L	168_W	1.839	0.64
61_T	123_I	1.832	0.64
15_L	176_F	1.813	0.63
64_L	168_W	1.807	0.63
125_E	140_D	1.798	0.62
23_Y	28_I	1.797	0.62
64_L	70_D	1.761	0.61
76_T	89_R	1.755	0.60
66_Q	127_N	1.746	0.60
64_L	127_N	1.738	0.59
207_E	210_F	1.732	0.59
176_F	180_R	1.704	0.58
151_V	155_L	1.700	0.58
108_S	198_L	1.667	0.56
68_A	162_H	1.647	0.55
101_G	124_K	1.640	0.55
40_L	172_S	1.637	0.55
146_E	173_S	1.630	0.54
22_P	89_R	1.627	0.54
128_E	152_E	1.626	0.54
61_T	108_S	1.620	0.54
177_V	184_G	1.615	0.54
122_A	158_R	1.608	0.53
90_Q	107_L	1.596	0.53
31_P	89_R	1.590	0.52
64_L	106_L	1.587	0.52
37_K	159_V	1.547	0.50
15_L	60_V	1.524	0.49
131_I	135_D	1.509	0.49
62_A	98_Y	1.490	0.48
177_V	194_S	1.463	0.46
26_K	108_S	1.463	0.46
63_M	124_K	1.457	0.46
63_M	67_S	1.451	0.46
21_H	117_R	1.439	0.45
62_A	88_N	1.429	0.45
26_K	123_I	1.405	0.44
24_L	176_F	1.403	0.44
142_N	220_L	1.383	0.43
45_F	169_K	1.379	0.42
115_M	160_A	1.373	0.42
59_I	108_S	1.371	0.42
12_N	35_E	1.369	0.42
44_L	160_A	1.363	0.42
223_L	226_P	1.360	0.42
124_K	131_I	1.350	0.41
119_L	122_A	1.349	0.41
126_I	162_H	1.348	0.41
103_Y	180_R	1.345	0.41
70_D	89_R	1.341	0.41
153_S	193_G	1.332	0.40
233_N	236_K	1.329	0.40
28_I	37_K	1.315	0.39
31_P	134_Y	1.307	0.39
113_I	156_F	1.299	0.39
101_G	176_F	1.294	0.39
188_F	194_S	1.291	0.38
9_A	13_T	1.270	0.37
67_S	87_K	1.268	0.37
68_A	95_A	1.258	0.37
15_L	63_M	1.255	0.37
75_V	123_I	1.248	0.36
15_L	19_L	1.246	0.36
51_K	181_L	1.238	0.36
66_Q	168_W	1.217	0.35
131_I	154_A	1.216	0.35
72_H	94_L	1.210	0.35
72_H	96_G	1.210	0.35
74_E	170_K	1.197	0.34
41_F	62_A	1.189	0.34
54_D	115_M	1.173	0.33
11_L	89_R	1.169	0.33
131_I	147_S	1.163	0.33
181_L	202_K	1.158	0.33
99_F	220_L	1.156	0.32
44_L	155_L	1.151	0.32
39_L	73_D	1.151	0.32
76_T	122_A	1.150	0.32
12_N	21_H	1.147	0.32
122_A	178_F	1.145	0.32
68_A	201_T	1.124	0.31
158_R	203_E	1.122	0.31
66_Q	106_L	1.118	0.31
42_H	68_A	1.112	0.31
230_I	234_R	1.087	0.30
69_L	152_E	1.082	0.29
13_T	145_F	1.076	0.29
70_D	95_A	1.071	0.29
221_L	233_N	1.070	0.29
108_S	157_H	1.067	0.29
30_A	99_F	1.066	0.29
161_E	169_K	1.065	0.29
190_D	229_N	1.065	0.29
59_I	115_M	1.064	0.29
176_F	179_K	1.060	0.29
103_Y	152_E	1.050	0.28
76_T	120_A	1.045	0.28
45_F	168_W	1.045	0.28
79_R	167_R	1.033	0.28
206_L	239_S	1.029	0.27
91_L	97_D	1.026	0.27
64_L	93_V	1.020	0.27
26_K	161_E	1.016	0.27
194_S	228_Q	1.011	0.27
61_T	119_L	1.002	0.26
67_S	71_T	1.001	0.26
35_E	123_I	0.994	0.26
71_T	122_A	0.993	0.26
52_N	143_D	0.990	0.26
58_Y	63_M	0.990	0.26
23_Y	103_Y	0.986	0.26
14_K	56_E	0.984	0.26
73_D	182_M	0.984	0.26
143_D	203_E	0.982	0.26
204_E	235_L	0.969	0.25
115_M	186_D	0.967	0.25
21_H	102_L	0.957	0.25
34_D	124_K	0.956	0.25
33_I	99_F	0.956	0.25
96_G	100_S	0.950	0.24
72_H	100_S	0.950	0.24
94_L	100_S	0.950	0.24
65_V	155_L	0.949	0.24
172_S	176_F	0.948	0.24
59_I	63_M	0.947	0.24
199_G	213_A	0.946	0.24
14_K	145_F	0.944	0.24
24_L	95_A	0.938	0.24
182_M	219_S	0.936	0.24
28_I	159_V	0.935	0.24
11_L	64_L	0.931	0.24
12_N	185_N	0.931	0.24
72_H	107_L	0.930	0.24
94_L	107_L	0.930	0.24
96_G	107_L	0.930	0.24
237_T	240_Q	0.924	0.24
162_H	239_S	0.922	0.23
34_D	179_K	0.919	0.23
24_L	30_A	0.917	0.23
36_D	176_F	0.916	0.23
60_V	120_A	0.915	0.23
73_D	177_V	0.903	0.23
18_K	119_L	0.896	0.23
55_R	59_I	0.892	0.22
13_T	113_I	0.890	0.22
13_T	71_T	0.884	0.22
11_L	99_F	0.880	0.22
48_A	62_A	0.879	0.22
200_K	205_I	0.879	0.22
148_V	203_E	0.879	0.22
10_N	15_L	0.877	0.22
28_I	63_M	0.876	0.22
69_L	90_Q	0.871	0.22
89_R	127_N	0.869	0.22
15_L	21_H	0.867	0.22
23_Y	127_N	0.857	0.21
22_P	126_I	0.853	0.21
137_S	156_F	0.851	0.21
128_E	180_R	0.850	0.21
98_Y	106_L	0.845	0.21
144_F	180_R	0.838	0.21
159_V	168_W	0.838	0.21
127_N	130_K	0.829	0.20
26_K	217_I	0.829	0.20
66_Q	98_Y	0.818	0.20
60_V	65_V	0.818	0.20
148_V	180_R	0.815	0.20
91_L	94_L	0.810	0.20
91_L	96_G	0.810	0.20
72_H	91_L	0.810	0.20
63_M	102_L	0.809	0.20
201_T	228_Q	0.803	0.20
63_M	71_T	0.802	0.20
68_A	102_L	0.797	0.19
201_T	204_E	0.793	0.19
125_E	195_F	0.787	0.19
89_R	115_M	0.787	0.19
129_H	136_R	0.783	0.19
18_K	156_F	0.783	0.19
21_H	83_R	0.782	0.19
108_S	178_F	0.780	0.19
94_L	104_Y	0.778	0.19
72_H	104_Y	0.778	0.19
96_G	104_Y	0.778	0.19
152_E	180_R	0.775	0.19
121_T	210_F	0.773	0.19
92_T	103_Y	0.764	0.18
45_F	142_N	0.762	0.18
117_R	135_D	0.761	0.18
85_E	186_D	0.760	0.18
133_L	235_L	0.758	0.18
155_L	168_W	0.756	0.18
124_K	152_E	0.751	0.18
125_E	134_Y	0.750	0.18
123_I	127_N	0.744	0.18
15_L	119_L	0.742	0.18
59_I	200_K	0.741	0.18
20_S	25_A	0.736	0.18
68_A	135_D	0.736	0.18
193_G	199_G	0.735	0.18
99_F	172_S	0.734	0.18
41_F	137_S	0.733	0.18
126_I	131_I	0.732	0.18
148_V	156_F	0.726	0.17
61_T	137_S	0.725	0.17
16_K	47_E	0.725	0.17
66_Q	90_Q	0.722	0.17
31_P	41_F	0.721	0.17
142_N	184_G	0.719	0.17
153_S	170_K	0.718	0.17
64_L	69_L	0.713	0.17
35_E	190_D	0.712	0.17
11_L	42_H	0.712	0.17
19_L	120_A	0.710	0.17
177_V	180_R	0.708	0.17
52_N	189_L	0.703	0.17
228_Q	231_L	0.699	0.17
8_L	61_T	0.695	0.17
31_P	62_A	0.694	0.17
221_L	235_L	0.692	0.16
24_L	128_E	0.687	0.16
36_D	102_L	0.685	0.16
25_A	175_F	0.679	0.16
223_L	227_I	0.676	0.16
102_L	124_K	0.675	0.16
183_N	199_G	0.673	0.16
69_L	155_L	0.671	0.16
145_F	187_A	0.670	0.16
73_D	184_G	0.669	0.16
71_T	124_K	0.665	0.16
108_S	205_I	0.663	0.16
180_R	184_G	0.662	0.16
61_T	147_S	0.662	0.16
75_V	166_P	0.661	0.16
86_N	178_F	0.660	0.16
137_S	187_A	0.659	0.16
68_A	176_F	0.658	0.16
140_D	174_D	0.658	0.16
132_R	145_F	0.657	0.16
23_Y	124_K	0.654	0.16
48_A	182_M	0.648	0.15
77_T	131_I	0.648	0.15
55_R	230_I	0.647	0.15
8_L	76_T	0.645	0.15
22_P	159_V	0.643	0.15
144_F	225_S	0.642	0.15
63_M	66_Q	0.638	0.15
11_L	45_F	0.637	0.15
34_D	37_K	0.635	0.15
35_E	38_L	0.635	0.15
120_A	123_I	0.631	0.15
61_T	67_S	0.629	0.15
183_N	193_G	0.628	0.15
124_K	128_E	0.625	0.15
94_L	97_D	0.622	0.15
72_H	97_D	0.622	0.15
38_L	115_M	0.619	0.15
47_E	59_I	0.618	0.15
60_V	106_L	0.617	0.15
72_H	90_Q	0.616	0.15
90_Q	96_G	0.616	0.15
90_Q	94_L	0.616	0.15
67_S	124_K	0.614	0.15
100_S	107_L	0.612	0.14
69_L	151_V	0.610	0.14
122_A	163_F	0.610	0.14
18_K	98_Y	0.608	0.14
36_D	185_N	0.607	0.14
52_N	148_V	0.606	0.14
189_L	201_T	0.605	0.14
67_S	176_F	0.602	0.14
82_K	123_I	0.601	0.14
127_N	168_W	0.598	0.14
90_Q	120_A	0.594	0.14
44_L	159_V	0.592	0.14
98_Y	207_E	0.590	0.14
92_T	221_L	0.587	0.14
11_L	175_F	0.587	0.14
49_D	171_L	0.586	0.14
102_L	181_L	0.586	0.14
60_V	123_I	0.583	0.14
146_E	207_E	0.583	0.14
20_S	153_S	0.583	0.14
204_E	213_A	0.582	0.14
23_Y	64_L	0.581	0.14
8_L	30_A	0.580	0.14
113_I	158_R	0.580	0.14
28_I	35_E	0.579	0.14
13_T	142_N	0.579	0.14
26_K	69_L	0.578	0.14
105_S	142_N	0.575	0.14
220_L	237_T	0.573	0.14
127_N	133_L	0.572	0.14
36_D	234_R	0.570	0.14
54_D	78_A	0.570	0.14
109_E	170_K	0.569	0.14
142_N	229_N	0.563	0.13
83_R	151_V	0.562	0.13
37_K	63_M	0.560	0.13
29_S	175_F	0.559	0.13
35_E	180_R	0.555	0.13
22_P	127_N	0.552	0.13
40_L	75_V	0.546	0.13
218_E	221_L	0.545	0.13
140_D	143_D	0.544	0.13
64_L	75_V	0.544	0.13
57_N	101_G	0.542	0.13
33_I	159_V	0.536	0.13
143_D	223_L	0.534	0.13
204_E	210_F	0.533	0.13
131_I	211_K	0.532	0.13
153_S	218_E	0.530	0.13
105_S	126_I	0.530	0.13
42_H	45_F	0.529	0.13
43_A	105_S	0.524	0.13
52_N	193_G	0.522	0.12
92_T	152_E	0.522	0.12
133_L	151_V	0.519	0.12
38_L	219_S	0.518	0.12
56_E	73_D	0.516	0.12
96_G	130_K	0.514	0.12
72_H	130_K	0.514	0.12
94_L	130_K	0.514	0.12
215_N	218_E	0.510	0.12
221_L	230_I	0.509	0.12
133_L	146_E	0.502	0.12
27_H	231_L	0.502	0.12
99_F	103_Y	0.501	0.12
38_L	77_T	0.501	0.12
187_A	219_S	0.501	0.12
68_A	101_G	0.500	0.12
211_K	240_Q	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3aqbB	1	0.988	95.3	0.917	Contact Map
3pkoA	2	0.9801	94.8	0.92	Contact Map
3aqbA	1	0.5299	94.6	0.921	Contact Map
4jxyA	5	0.9283	94.5	0.921	Contact Map
3wjkA	2	0.9801	94.5	0.921	Contact Map
4lobA	2	0.9602	94.3	0.922	Contact Map
3mzvA	2	0.9841	94.1	0.922	Contact Map
3qkcB	2	0.8486	94	0.923	Contact Map
4fp4A	2	0.8446	94	0.923	Contact Map
1v4eA	3	0.9402	93.1	0.925	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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