PABC - BACSU - GREMLIN Contacts

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PABC - Aminodeoxychorismate lyase

UniProt:	P28821	Sequences: MIYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEGCPFLLDWHIERLERALKDLQIEYTVSKHEILEMLDKLLKLNDIKDGNARVRLNISAGISDKGFVAQTYDKPTVLCFVNQLKPESLPLQKEGKVLSIRRNTPEGSFRLKSHHYLNNMYAKREIGNDPRVEGIFLTEDGAVAEGIISNVFWRKGRCIYTPSLDTGILDGVTRRFIIENAKDIGLELKTGRYELEALLTADEAWMTNSVLEIIPFTKIEEVNYGSQSGEATSALQLLYKKEIKNMIHEKGGRAWRSTQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	293 (269)
Sequences:	8894 (5875)
Seq/√Len:	358.2

ECOLI - ILVE PABC
BACSU - PABC ILVE1 ILVE2 DAAA
HALSA - Q9HNF8 Q9HS64

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
192_C	223_K	4.493	1.00
192_C	221_E	3.240	1.00
193_I	215_A	3.174	1.00
48_E	65_K	3.126	1.00
51_E	65_K	3.059	1.00
225_G	231_A	3.042	1.00
8_Y	78_L	2.591	1.00
204_D	209_R	2.566	1.00
126_Q	129_G	2.564	1.00
271_L	275_K	2.433	1.00
194_Y	225_G	2.416	1.00
176_A	226_R	2.414	1.00
64_S	67_E	2.393	1.00
74_K	78_L	2.392	1.00
218_I	272_L	2.355	1.00
45_W	209_R	2.237	1.00
58_Q	162_N	2.210	1.00
189_K	236_D	2.165	1.00
70_E	74_K	2.158	1.00
129_G	132_L	2.135	1.00
28_G	147_S	2.111	1.00
212_I	222_L	2.091	1.00
238_A	250_F	2.004	1.00
29_V	53_A	1.996	1.00
180_G	183_S	1.983	1.00
218_I	268_A	1.933	1.00
55_K	62_T	1.915	1.00
184_N	205_G	1.895	1.00
74_K	77_K	1.888	1.00
50_L	92_I	1.827	1.00
131_V	252_K	1.795	1.00
44_D	69_L	1.790	1.00
209_R	213_E	1.781	1.00
267_S	271_L	1.770	1.00
42_L	210_F	1.769	1.00
27_I	94_A	1.761	1.00
133_S	159_E	1.688	1.00
159_E	163_D	1.677	1.00
187_W	227_Y	1.670	1.00
268_A	272_L	1.668	1.00
36_Y	246_E	1.662	1.00
11_E	17_S	1.646	1.00
188_R	265_A	1.623	1.00
128_E	252_K	1.602	1.00
54_L	92_I	1.574	1.00
5_N	110_T	1.567	1.00
211_I	241_T	1.567	1.00
10_E	13_D	1.560	1.00
71_M	111_V	1.557	1.00
238_A	253_I	1.554	1.00
29_V	54_L	1.545	1.00
185_V	238_A	1.540	1.00
48_E	52_R	1.530	1.00
252_K	255_E	1.511	1.00
197_S	226_R	1.510	1.00
43_L	47_I	1.509	1.00
272_L	275_K	1.503	1.00
59_I	92_I	1.502	1.00
44_D	48_E	1.498	1.00
186_F	241_T	1.497	1.00
180_G	240_M	1.478	1.00
176_A	228_E	1.449	1.00
193_I	220_L	1.442	1.00
172_T	176_A	1.438	1.00
43_L	69_L	1.416	1.00
33_F	40_P	1.411	1.00
213_E	217_D	1.411	1.00
69_L	73_D	1.409	1.00
81_I	86_A	1.404	1.00
187_W	235_A	1.395	1.00
52_R	55_K	1.395	1.00
268_A	271_L	1.357	1.00
187_W	194_Y	1.352	1.00
215_A	220_L	1.352	1.00
186_F	239_W	1.344	1.00
35_L	76_L	1.342	1.00
208_R	224_T	1.326	1.00
52_R	204_D	1.324	1.00
200_T	226_R	1.320	1.00
59_I	109_P	1.300	1.00
188_R	193_I	1.293	1.00
70_E	73_D	1.290	1.00
187_W	238_A	1.279	1.00
40_P	43_L	1.275	1.00
42_L	45_W	1.274	1.00
22_G	28_G	1.267	1.00
45_W	213_E	1.266	1.00
24_L	89_R	1.250	1.00
237_E	263_G	1.247	1.00
158_R	162_N	1.246	1.00
169_I	185_V	1.243	1.00
189_K	234_T	1.243	1.00
195_T	208_R	1.238	1.00
233_L	256_V	1.233	1.00
3_Y	71_M	1.219	1.00
75_L	113_C	1.211	1.00
45_W	48_E	1.210	1.00
125_L	129_G	1.207	1.00
262_S	267_S	1.206	1.00
35_L	86_A	1.202	1.00
242_N	245_L	1.199	1.00
53_A	145_L	1.195	1.00
72_L	88_V	1.189	1.00
73_D	77_K	1.185	1.00
67_E	70_E	1.173	1.00
194_Y	223_K	1.172	1.00
20_D	93_S	1.164	1.00
66_H	70_E	1.159	1.00
252_K	257_N	1.153	1.00
40_P	72_L	1.153	1.00
220_L	265_A	1.148	1.00
22_G	93_S	1.146	1.00
56_D	145_L	1.143	1.00
228_E	231_A	1.133	1.00
189_K	194_Y	1.130	1.00
28_G	148_H	1.128	1.00
237_E	266_T	1.126	1.00
71_M	113_C	1.111	1.00
230_E	234_T	1.102	1.00
3_Y	8_Y	1.102	1.00
189_K	231_A	1.098	1.00
8_Y	75_L	1.093	1.00
215_A	269_L	1.093	1.00
227_Y	231_A	1.076	1.00
156_A	170_F	1.069	1.00
208_R	212_I	1.062	1.00
186_F	208_R	1.060	1.00
29_V	50_L	1.055	1.00
72_L	113_C	1.048	1.00
198_L	208_R	1.046	1.00
194_Y	227_Y	1.042	1.00
92_I	111_V	1.039	1.00
197_S	225_G	1.038	1.00
91_N	112_L	1.038	1.00
157_K	161_G	1.034	1.00
23_F	93_S	1.029	1.00
65_K	69_L	1.023	1.00
47_I	69_L	1.019	1.00
240_M	250_F	1.008	1.00
197_S	224_T	1.008	1.00
30_F	150_Y	0.995	1.00
51_E	62_T	0.989	1.00
186_F	212_I	0.987	1.00
172_T	201_G	0.977	1.00
167_E	181_I	0.977	1.00
270_Q	274_K	0.977	1.00
3_Y	63_V	0.976	1.00
175_G	230_E	0.976	1.00
75_L	115_V	0.974	1.00
198_L	204_D	0.969	1.00
51_E	55_K	0.969	1.00
191_R	236_D	0.964	1.00
44_D	65_K	0.962	1.00
128_E	131_V	0.961	1.00
29_V	92_I	0.960	1.00
127_K	132_L	0.958	1.00
52_R	144_R	0.957	1.00
159_E	162_N	0.956	1.00
56_D	144_R	0.951	1.00
169_I	232_L	0.949	1.00
4_V	14_A	0.944	1.00
216_K	221_E	0.936	1.00
128_E	251_T	0.935	1.00
215_A	222_L	0.935	1.00
76_L	86_A	0.925	1.00
177_V	185_V	0.925	1.00
126_Q	131_V	0.919	1.00
95_G	110_T	0.918	1.00
216_K	224_T	0.916	1.00
48_E	51_E	0.912	1.00
52_R	56_D	0.909	1.00
196_P	227_Y	0.909	1.00
129_G	180_G	0.906	1.00
45_W	210_F	0.905	1.00
263_G	266_T	0.903	1.00
77_K	80_D	0.898	1.00
167_E	180_G	0.896	1.00
129_G	250_F	0.895	1.00
184_N	241_T	0.894	1.00
24_L	91_N	0.890	1.00
18_P	112_L	0.875	1.00
205_G	241_T	0.875	1.00
190_G	236_D	0.873	1.00
188_R	237_E	0.869	1.00
213_E	216_K	0.867	1.00
16_L	23_F	0.861	1.00
24_L	114_F	0.850	1.00
45_W	206_V	0.846	1.00
47_I	72_L	0.845	1.00
124_P	128_E	0.836	1.00
51_E	68_I	0.836	1.00
75_L	79_N	0.834	1.00
138_T	173_E	0.833	1.00
47_I	51_E	0.833	1.00
58_Q	158_R	0.833	1.00
171_L	229_L	0.832	1.00
254_E	257_N	0.831	1.00
264_E	268_A	0.830	1.00
156_A	181_I	0.822	1.00
7_R	15_V	0.822	1.00
54_L	59_I	0.821	1.00
217_D	272_L	0.820	1.00
191_R	221_E	0.820	1.00
177_V	187_W	0.817	1.00
168_G	181_I	0.816	1.00
47_I	65_K	0.814	1.00
67_E	71_M	0.811	1.00
265_A	268_A	0.809	1.00
20_D	95_G	0.808	1.00
264_E	267_S	0.804	1.00
267_S	270_Q	0.803	1.00
13_D	17_S	0.798	1.00
167_E	183_S	0.798	1.00
86_A	115_V	0.795	1.00
37_E	82_K	0.793	1.00
212_I	224_T	0.788	1.00
124_P	127_K	0.786	1.00
15_V	18_P	0.781	1.00
57_L	151_L	0.781	1.00
33_F	72_L	0.777	1.00
35_L	40_P	0.776	1.00
214_N	218_I	0.774	1.00
102_V	161_G	0.769	1.00
8_Y	71_M	0.769	1.00
263_G	267_S	0.767	1.00
135_R	140_E	0.764	1.00
194_Y	231_A	0.762	1.00
43_L	72_L	0.762	1.00
4_V	112_L	0.761	1.00
174_D	226_R	0.759	1.00
235_A	238_A	0.758	1.00
71_M	74_K	0.756	1.00
20_D	97_S	0.755	1.00
35_L	88_V	0.753	1.00
66_H	69_L	0.750	1.00
63_V	67_E	0.749	1.00
179_E	203_L	0.748	1.00
91_N	148_H	0.743	1.00
128_E	166_V	0.741	1.00
188_R	239_W	0.739	1.00
230_E	233_L	0.738	1.00
212_I	216_K	0.735	1.00
215_A	218_I	0.735	1.00
185_V	196_P	0.734	1.00
36_Y	41_F	0.731	1.00
191_R	220_L	0.731	1.00
34_R	243_S	0.731	1.00
23_F	112_L	0.725	1.00
251_T	262_S	0.724	0.99
231_A	234_T	0.723	0.99
127_K	131_V	0.723	0.99
68_I	111_V	0.723	0.99
210_F	213_E	0.722	0.99
47_I	68_I	0.722	0.99
217_D	276_E	0.718	0.99
87_R	244_V	0.716	0.99
137_N	141_G	0.716	0.99
156_A	168_G	0.712	0.99
41_F	210_F	0.712	0.99
96_I	110_T	0.711	0.99
199_D	226_R	0.711	0.99
259_G	263_G	0.711	0.99
104_Q	107_D	0.710	0.99
93_S	112_L	0.709	0.99
63_V	71_M	0.708	0.99
173_E	176_A	0.703	0.99
245_L	248_I	0.703	0.99
14_A	112_L	0.701	0.99
26_G	149_H	0.699	0.99
32_T	87_R	0.697	0.99
197_S	200_T	0.696	0.99
31_E	53_A	0.693	0.99
163_D	254_E	0.689	0.99
127_K	130_K	0.685	0.99
11_E	19_F	0.679	0.99
157_K	167_E	0.678	0.99
158_R	161_G	0.676	0.99
232_L	253_I	0.675	0.99
27_I	154_M	0.675	0.99
137_N	140_E	0.674	0.99
34_R	246_E	0.674	0.99
4_V	9_M	0.672	0.99
103_A	158_R	0.667	0.99
21_H	27_I	0.663	0.99
132_L	169_I	0.663	0.99
186_F	195_T	0.662	0.99
33_F	90_L	0.662	0.99
195_T	224_T	0.659	0.99
14_A	18_P	0.655	0.99
157_K	182_I	0.652	0.99
37_E	83_D	0.650	0.99
101_F	153_N	0.650	0.99
32_T	244_V	0.650	0.99
129_G	169_I	0.649	0.99
210_F	214_N	0.647	0.99
160_I	164_P	0.647	0.99
169_I	238_A	0.644	0.99
247_I	269_L	0.644	0.99
48_E	209_R	0.643	0.99
175_G	229_L	0.643	0.99
23_F	91_N	0.642	0.99
131_V	254_E	0.642	0.99
63_V	111_V	0.642	0.99
171_L	177_V	0.636	0.99
102_V	107_D	0.634	0.99
183_S	240_M	0.633	0.99
246_E	274_K	0.632	0.99
125_L	128_E	0.632	0.99
8_Y	74_K	0.628	0.99
22_G	147_S	0.625	0.99
130_K	163_D	0.623	0.98
232_L	238_A	0.622	0.98
177_V	227_Y	0.622	0.98
32_T	242_N	0.619	0.98
260_S	263_G	0.618	0.98
93_S	110_T	0.616	0.98
87_R	116_N	0.616	0.98
79_N	115_V	0.613	0.98
126_Q	132_L	0.613	0.98
130_K	165_R	0.613	0.98
193_I	239_W	0.612	0.98
214_N	272_L	0.612	0.98
138_T	141_G	0.612	0.98
40_P	73_D	0.611	0.98
51_E	64_S	0.610	0.98
211_I	269_L	0.608	0.98
190_G	221_E	0.607	0.98
29_V	57_L	0.606	0.98
125_L	132_L	0.606	0.98
146_K	203_L	0.605	0.98
227_Y	235_A	0.603	0.98
259_G	262_S	0.602	0.98
187_W	232_L	0.601	0.98
9_M	12_K	0.601	0.98
189_K	235_A	0.597	0.98
156_A	159_E	0.595	0.98
21_H	94_A	0.592	0.98
246_E	273_Y	0.592	0.98
193_I	265_A	0.588	0.98
178_A	202_I	0.586	0.98
16_L	20_D	0.585	0.98
189_K	192_C	0.582	0.98
136_R	140_E	0.582	0.98
238_A	258_Y	0.581	0.98
72_L	90_L	0.580	0.98
130_K	252_K	0.579	0.98
229_L	233_L	0.577	0.98
186_F	193_I	0.576	0.98
188_R	191_R	0.575	0.97
55_K	60_E	0.573	0.97
130_K	166_V	0.570	0.97
133_S	163_D	0.568	0.97
50_L	90_L	0.567	0.97
43_L	73_D	0.565	0.97
19_F	96_I	0.564	0.97
133_S	136_R	0.564	0.97
233_L	254_E	0.563	0.97
150_Y	153_N	0.563	0.97
216_K	222_L	0.562	0.97
206_V	209_R	0.559	0.97
137_N	152_N	0.554	0.97
207_T	273_Y	0.554	0.97
89_R	148_H	0.553	0.97
160_I	168_G	0.553	0.97
33_F	43_L	0.551	0.97
140_E	143_F	0.548	0.97
134_I	137_N	0.546	0.97
207_T	243_S	0.543	0.96
42_L	206_V	0.542	0.96
184_N	204_D	0.541	0.96
195_T	198_L	0.540	0.96
126_Q	248_I	0.539	0.96
251_T	258_Y	0.537	0.96
137_N	143_F	0.536	0.96
135_R	139_P	0.533	0.96
31_E	50_L	0.530	0.96
206_V	210_F	0.530	0.96
134_I	159_E	0.527	0.96
41_F	243_S	0.526	0.96
165_R	252_K	0.526	0.96
150_Y	203_L	0.524	0.96
146_K	179_E	0.522	0.96
33_F	47_I	0.518	0.95
22_G	148_H	0.516	0.95
17_S	96_I	0.513	0.95
88_V	115_V	0.512	0.95
27_I	59_I	0.511	0.95
25_Y	149_H	0.511	0.95
19_F	24_L	0.511	0.95
210_F	273_Y	0.510	0.95
11_E	79_N	0.509	0.95
135_R	138_T	0.509	0.95
81_I	115_V	0.508	0.95
272_L	276_E	0.507	0.95
249_P	263_G	0.506	0.95
59_I	94_A	0.504	0.95
187_W	225_G	0.504	0.95
87_R	99_K	0.504	0.95
7_R	13_D	0.502	0.95
44_D	66_H	0.502	0.95
90_L	113_C	0.502	0.95
34_R	118_L	0.501	0.95
29_V	145_L	0.500	0.94
82_K	86_A	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1iyeA	5	0.9898	100	0.097	Contact Map
2eiyA	5	0.9863	100	0.11	Contact Map
3u0gA	5	0.9795	100	0.114	Contact Map
4chiA	2	0.9693	100	0.142	Contact Map
4tm5A	2	0.9488	100	0.151	Contact Map
3dtgA	2	0.9863	100	0.155	Contact Map
4cmfA	4	0.9761	100	0.156	Contact Map
3daaA	2	0.9283	100	0.157	Contact Map
3uzoA	2	0.9795	100	0.16	Contact Map
4dqnA	2	0.9863	100	0.161	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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