MOTA - BACSU - GREMLIN Contacts

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MOTA - Motility protein A

UniProt:	P28611	Sequences: MDKTSLIGIILAFVALSVGMVLKGVSFSALANPAAILIIIAGTISAVVIAFPTKEIKKVPTLFRVLFKENKQLTIEELIPMFSEWAQLARREGLLALEASIEDVDDAFLKNGLSMAVDGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGAVIGLIAALSHMDNTDELGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREVMIEGVLSVLEGQAPKVIEQKLLMYLPAKDRLKFAEQGEAQNGEKKEEEA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	270 (249)
Sequences:	2347 (1546)
Seq/√Len:	98.0

ECOLI - MOTA
BACSU - MOTA YTXD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
133_V	223_I	3.779	1.00
151_G	202_H	3.770	1.00
88_L	100_S	3.419	1.00
88_L	96_A	3.285	1.00
19_G	38_I	3.104	1.00
64_R	68_K	3.005	1.00
43_T	150_A	2.931	1.00
147_F	204_F	2.808	1.00
11_L	45_S	2.783	1.00
167_I	188_V	2.766	1.00
106_D	219_R	2.581	1.00
112_G	226_V	2.547	1.00
140_H	215_E	2.418	1.00
133_V	216_V	2.344	1.00
48_V	56_I	2.323	1.00
148_T	205_A	2.297	1.00
74_T	77_E	2.296	1.00
175_N	178_E	2.261	1.00
59_V	147_F	2.194	1.00
196_T	201_W	2.187	1.00
12_A	199_V	2.185	1.00
136_M	216_V	2.183	1.00
111_N	132_E	2.179	1.00
26_S	168_A	2.179	1.00
40_I	196_T	2.168	1.00
82_F	238_I	2.098	1.00
43_T	154_A	2.070	1.00
66_L	204_F	2.010	1.00
32_N	35_A	1.947	1.00
50_A	206_N	1.942	1.00
5_S	207_K	1.932	1.00
154_A	196_T	1.927	1.00
29_A	171_S	1.927	1.00
140_H	212_S	1.882	1.00
225_G	242_L	1.867	1.00
52_P	55_E	1.864	1.00
137_E	216_V	1.862	1.00
57_K	61_T	1.855	1.00
53_T	57_K	1.814	1.00
109_L	222_M	1.773	1.00
228_S	233_Q	1.757	1.00
62_L	143_G	1.744	1.00
136_M	140_H	1.695	1.00
13_F	17_S	1.690	1.00
10_I	14_V	1.633	1.00
132_E	251_R	1.632	1.00
20_M	30_L	1.627	1.00
36_I	40_I	1.616	1.00
126_R	130_T	1.583	1.00
16_L	42_G	1.540	1.00
27_F	31_A	1.531	1.00
156_T	187_F	1.523	1.00
80_P	239_E	1.515	1.00
169_A	187_F	1.514	1.00
6_L	10_I	1.506	1.00
126_R	224_E	1.506	1.00
224_E	245_Y	1.487	1.00
61_T	64_R	1.470	1.00
5_S	66_L	1.462	1.00
154_A	201_W	1.448	1.00
148_T	209_K	1.427	1.00
5_S	49_I	1.424	1.00
56_I	59_V	1.404	1.00
236_K	239_E	1.400	0.99
239_E	243_L	1.400	0.99
12_A	45_S	1.396	0.99
55_E	210_R	1.391	0.99
84_E	87_Q	1.391	0.99
47_V	150_A	1.378	0.99
14_V	18_V	1.346	0.99
82_F	225_G	1.330	0.99
129_M	226_V	1.299	0.99
7_I	14_V	1.279	0.99
100_S	103_D	1.274	0.99
16_L	195_F	1.260	0.99
163_V	183_I	1.248	0.99
159_V	183_I	1.244	0.99
18_V	22_L	1.244	0.99
47_V	56_I	1.235	0.99
35_A	189_A	1.230	0.99
159_V	189_A	1.226	0.99
150_A	201_W	1.221	0.99
178_E	181_H	1.220	0.99
116_A	125_I	1.217	0.99
59_V	63_F	1.201	0.98
124_F	233_Q	1.201	0.98
81_M	104_V	1.199	0.98
88_L	92_E	1.196	0.98
78_L	222_M	1.189	0.98
22_L	37_L	1.180	0.98
144_A	212_S	1.164	0.98
89_A	97_L	1.156	0.98
111_N	240_Q	1.154	0.98
140_H	208_L	1.146	0.98
59_V	146_I	1.145	0.98
168_A	182_A	1.143	0.98
30_L	168_A	1.120	0.98
183_I	194_I	1.111	0.97
66_L	207_K	1.109	0.97
131_E	135_A	1.103	0.97
101_I	114_S	1.102	0.97
162_A	191_L	1.100	0.97
183_I	187_F	1.085	0.97
7_I	11_L	1.085	0.97
15_A	45_S	1.076	0.97
183_I	189_A	1.072	0.97
136_M	212_S	1.066	0.97
178_E	182_A	1.063	0.97
14_V	17_S	1.063	0.97
156_T	183_I	1.059	0.97
218_L	222_M	1.053	0.96
16_L	199_V	1.049	0.96
112_G	129_M	1.040	0.96
32_N	185_A	1.036	0.96
21_V	27_F	1.036	0.96
46_A	153_Y	1.031	0.96
102_E	114_S	1.030	0.96
195_F	199_V	1.028	0.96
63_F	147_F	1.021	0.96
121_S	124_F	1.020	0.96
55_E	146_I	1.013	0.96
13_F	200_L	0.997	0.95
179_L	183_I	0.994	0.95
162_A	169_A	0.989	0.95
51_F	145_A	0.987	0.95
77_E	81_M	0.972	0.94
160_L	195_F	0.952	0.94
159_V	169_A	0.941	0.93
162_A	170_L	0.940	0.93
107_A	110_K	0.937	0.93
173_M	180_G	0.935	0.93
23_K	168_A	0.932	0.93
55_E	142_A	0.930	0.93
20_M	25_V	0.927	0.93
169_A	183_I	0.927	0.93
31_A	36_I	0.926	0.93
181_H	184_S	0.926	0.93
78_L	218_L	0.924	0.93
247_P	250_D	0.923	0.93
125_I	230_L	0.921	0.93
62_L	66_L	0.920	0.93
157_L	182_A	0.920	0.93
73_L	77_E	0.911	0.92
180_G	184_S	0.909	0.92
207_K	211_K	0.907	0.92
147_F	208_L	0.906	0.92
130_T	223_I	0.900	0.92
38_I	164_I	0.897	0.92
69_E	211_K	0.894	0.91
144_A	209_K	0.886	0.91
50_A	149_Q	0.884	0.91
212_S	216_V	0.879	0.91
63_F	204_F	0.878	0.91
51_F	149_Q	0.875	0.91
120_Q	128_I	0.872	0.90
81_M	109_L	0.871	0.90
159_V	194_I	0.870	0.90
181_H	185_A	0.867	0.90
88_L	97_L	0.865	0.90
163_V	194_I	0.864	0.90
85_W	97_L	0.860	0.90
170_L	191_L	0.860	0.90
57_K	60_P	0.857	0.90
85_W	113_L	0.854	0.90
87_Q	91_R	0.850	0.89
115_M	128_I	0.847	0.89
228_S	241_K	0.845	0.89
224_E	241_K	0.843	0.89
40_I	44_I	0.843	0.89
179_L	182_A	0.842	0.89
175_N	184_S	0.840	0.89
26_S	29_A	0.839	0.89
248_A	251_R	0.838	0.89
20_M	191_L	0.832	0.88
23_K	189_A	0.827	0.88
153_Y	198_Y	0.826	0.88
114_S	240_Q	0.825	0.88
58_K	142_A	0.824	0.88
22_L	34_A	0.824	0.88
147_F	201_W	0.822	0.88
39_I	195_F	0.815	0.87
149_Q	153_Y	0.813	0.87
9_I	13_F	0.809	0.87
75_I	218_L	0.806	0.87
196_T	200_L	0.806	0.87
228_S	238_I	0.801	0.86
127_D	131_E	0.795	0.86
86_A	225_G	0.790	0.86
156_T	169_A	0.789	0.85
24_G	182_A	0.788	0.85
33_P	36_I	0.787	0.85
84_E	100_S	0.785	0.85
144_A	148_T	0.783	0.85
23_K	187_F	0.780	0.85
176_T	181_H	0.779	0.85
156_T	189_A	0.775	0.84
37_L	151_G	0.773	0.84
46_A	199_V	0.772	0.84
156_T	163_V	0.772	0.84
91_R	120_Q	0.771	0.84
20_M	159_V	0.771	0.84
83_S	239_E	0.771	0.84
53_T	56_I	0.768	0.84
159_V	163_V	0.767	0.84
122_A	231_E	0.764	0.84
30_L	169_A	0.764	0.84
116_A	226_V	0.763	0.83
4_T	50_A	0.760	0.83
51_F	146_I	0.760	0.83
162_A	188_V	0.759	0.83
116_A	230_L	0.749	0.82
133_V	219_R	0.746	0.82
90_R	234_A	0.744	0.82
233_Q	241_K	0.744	0.82
139_R	215_E	0.742	0.82
47_V	59_V	0.741	0.82
137_E	212_S	0.739	0.81
11_L	48_V	0.732	0.81
163_V	187_F	0.732	0.81
133_V	220_E	0.731	0.81
124_F	127_D	0.728	0.81
15_A	41_A	0.725	0.80
149_Q	152_T	0.723	0.80
178_E	184_S	0.722	0.80
157_L	160_L	0.720	0.80
35_A	162_A	0.719	0.80
151_G	187_F	0.719	0.80
159_V	187_F	0.718	0.80
175_N	179_L	0.717	0.80
9_I	49_I	0.712	0.79
83_S	235_P	0.705	0.78
168_A	171_S	0.701	0.78
60_P	63_F	0.701	0.78
47_V	146_I	0.700	0.78
208_L	215_E	0.700	0.78
4_T	11_L	0.697	0.78
61_T	145_A	0.693	0.77
55_E	214_Q	0.691	0.77
113_L	117_V	0.689	0.77
32_N	38_I	0.687	0.77
119_G	232_G	0.687	0.77
63_F	67_F	0.686	0.76
85_W	226_V	0.684	0.76
66_L	147_F	0.678	0.76
221_V	245_Y	0.677	0.76
24_G	168_A	0.676	0.75
157_L	181_H	0.673	0.75
48_V	53_T	0.669	0.75
62_L	208_L	0.668	0.75
156_T	159_V	0.667	0.74
169_A	198_Y	0.665	0.74
81_M	100_S	0.663	0.74
162_A	183_I	0.663	0.74
134_E	137_E	0.660	0.74
139_R	208_L	0.658	0.73
69_E	72_Q	0.658	0.73
26_S	171_S	0.654	0.73
73_L	106_D	0.653	0.73
142_A	145_A	0.651	0.73
229_V	238_I	0.650	0.73
46_A	157_L	0.648	0.72
135_A	138_D	0.645	0.72
61_T	249_K	0.644	0.72
87_Q	238_I	0.643	0.72
162_A	198_Y	0.643	0.72
157_L	171_S	0.643	0.72
18_V	27_F	0.641	0.72
43_T	201_W	0.633	0.71
39_I	199_V	0.632	0.70
117_V	234_A	0.629	0.70
157_L	168_A	0.627	0.70
73_L	218_L	0.624	0.69
120_Q	125_I	0.623	0.69
157_L	183_I	0.621	0.69
32_N	159_V	0.619	0.69
225_G	241_K	0.618	0.69
189_A	195_F	0.617	0.69
15_A	30_L	0.616	0.68
115_M	233_Q	0.612	0.68
20_M	164_I	0.610	0.68
17_S	27_F	0.609	0.68
177_D	181_H	0.608	0.67
162_A	189_A	0.608	0.67
131_E	244_M	0.606	0.67
148_T	152_T	0.605	0.67
135_A	150_A	0.605	0.67
169_A	189_A	0.604	0.67
162_A	178_E	0.601	0.67
153_Y	202_H	0.600	0.66
15_A	19_G	0.600	0.66
54_K	58_K	0.599	0.66
23_K	169_A	0.599	0.66
126_R	231_E	0.596	0.66
28_S	31_A	0.594	0.66
227_L	241_K	0.594	0.66
52_P	58_K	0.593	0.66
163_V	169_A	0.589	0.65
161_G	189_A	0.586	0.65
187_F	195_F	0.586	0.65
67_F	227_L	0.586	0.65
104_V	112_G	0.586	0.65
227_L	231_E	0.586	0.65
30_L	183_I	0.586	0.65
82_F	229_V	0.585	0.65
185_A	192_L	0.584	0.64
87_Q	236_K	0.583	0.64
86_A	95_L	0.581	0.64
127_D	130_T	0.580	0.64
233_Q	238_I	0.578	0.64
192_L	198_Y	0.576	0.63
79_I	221_V	0.575	0.63
25_V	164_I	0.575	0.63
95_L	117_V	0.573	0.63
206_N	209_K	0.573	0.63
9_I	17_S	0.572	0.63
147_F	150_A	0.571	0.63
49_I	66_L	0.571	0.63
229_V	241_K	0.571	0.63
132_E	244_M	0.571	0.63
237_V	240_Q	0.570	0.63
39_I	43_T	0.569	0.62
8_G	48_V	0.568	0.62
201_W	204_F	0.567	0.62
33_P	37_L	0.566	0.62
152_T	168_A	0.565	0.62
4_T	57_K	0.565	0.62
35_A	159_V	0.563	0.62
141_Q	144_A	0.558	0.61
156_T	195_F	0.558	0.61
70_N	211_K	0.557	0.61
66_L	208_L	0.557	0.61
107_A	248_A	0.557	0.61
175_N	183_I	0.554	0.60
20_M	32_N	0.554	0.60
157_L	163_V	0.548	0.60
49_I	52_P	0.545	0.59
11_L	14_V	0.543	0.59
86_A	229_V	0.539	0.58
111_N	115_M	0.538	0.58
215_E	219_R	0.537	0.58
72_Q	77_E	0.536	0.58
140_H	143_G	0.535	0.58
116_A	240_Q	0.535	0.58
82_F	242_L	0.531	0.57
11_L	15_A	0.531	0.57
67_F	207_K	0.530	0.57
222_M	226_V	0.528	0.57
164_I	169_A	0.526	0.56
59_V	62_L	0.525	0.56
113_L	163_V	0.525	0.56
54_K	214_Q	0.523	0.56
101_I	117_V	0.517	0.55
98_E	179_L	0.517	0.55
125_I	242_L	0.516	0.55
81_M	105_D	0.516	0.55
76_E	246_L	0.515	0.55
39_I	150_A	0.515	0.55
162_A	192_L	0.514	0.55
94_L	232_G	0.513	0.55
56_I	60_P	0.513	0.55
15_A	37_L	0.510	0.54
172_H	175_N	0.508	0.54
197_G	202_H	0.507	0.54
88_L	121_S	0.507	0.54
89_A	95_L	0.506	0.54
109_L	227_L	0.506	0.54
114_S	221_V	0.505	0.53
20_M	34_A	0.505	0.53
152_T	156_T	0.504	0.53
12_A	46_A	0.504	0.53
39_I	194_I	0.503	0.53
94_L	114_S	0.502	0.53
89_A	96_A	0.501	0.53
88_L	129_M	0.500	0.53

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4il3A	1	0.9185	79.9	0.944	Contact Map
1i5pA	1	0.5481	70	0.948	Contact Map
4aw6A	2	0.9148	69.3	0.949	Contact Map
4ev6A	3	0.2222	29.8	0.96	Contact Map
2qk1A	1	0.8074	22.2	0.962	Contact Map
4i0uA	4	0.2148	21.4	0.963	Contact Map
2c9kA	1	0.4074	13.2	0.966	Contact Map
2gyqA	2	0.5407	9.5	0.968	Contact Map
3dl8G	1	0.2333	9	0.968	Contact Map
1mhsA	2	0.3259	7.7	0.969	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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