TAGB - BACSU - GREMLIN Contacts

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TAGB - Putative CDP-glycerol:glycerophosphate glycerophosphotransferase

UniProt:	P27621	Sequences: MKIRSLLANCYLYFLSAIAFFLQWVKPESKVTLLISFEANAKAILEEYEQGQYSYKLNILYTQQASAIAESFPNVDAYLLQEKNPIHLIKAVYLMFNSKVIITDNYFLLTSVLNKRKQTKCIQVWHANGSLKKFGLEDITNMQRTKTDIKRFQKVYSSYDYLTVGSEEMANIFKKSFGIKDNQLLKIGVPLTDPYYRENKKKISDTLNIQRKKIILYAPTFRDYNMQSIQLPFTEEQLIHQLKEEYVLFVKLHPAIQNNIDIKYSSDYIKDVSNYALFDLLMAADILITDYSSVPFEFSILNKPILFYTYDLKLYQQKRGLVDNYLSIIPGRACYDSESLINEIQTPFNYSKIKVFSDRWNKYSDGNSSQNLLNFIENLIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	381 (347)
Sequences:	2652 (2189)
Seq/√Len:	117.5

BACSU - TAGB TAGF GGAB SPSB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
365_D	371_N	5.062	1.00
164_V	170_A	4.434	1.00
336_D	339_S	4.269	1.00
370_Q	374_N	3.671	1.00
367_N	370_Q	3.660	1.00
170_A	186_K	3.659	1.00
42_K	46_E	3.377	1.00
47_E	50_Q	3.252	1.00
47_E	51_G	3.031	1.00
115_K	160_D	2.975	1.00
167_E	362_K	2.720	1.00
31_V	94_L	2.706	1.00
334_C	343_E	2.665	1.00
298_F	303_K	2.520	1.00
302_N	357_S	2.515	1.00
47_E	370_Q	2.467	1.00
190_P	372_L	2.456	1.00
39_A	104_D	2.427	1.00
34_L	59_I	2.413	1.00
306_L	334_C	2.363	1.00
166_S	169_M	2.295	1.00
164_V	186_K	2.293	1.00
137_E	322_V	2.281	1.00
29_S	99_K	2.221	1.00
249_F	272_V	2.209	1.00
33_L	98_S	2.195	1.00
237_Q	338_E	2.179	1.00
31_V	98_S	2.176	1.00
309_T	325_Y	2.158	1.00
213_K	246_Y	2.068	1.00
27_P	116_R	2.051	1.00
167_E	186_K	2.017	1.00
161_Y	185_L	1.996	1.00
31_V	97_N	1.992	1.00
302_N	353_I	1.982	1.00
51_G	374_N	1.982	1.00
289_T	295_P	1.978	1.00
334_C	340_L	1.974	1.00
324_N	327_S	1.895	1.00
44_I	124_V	1.891	1.00
37_F	46_E	1.891	1.00
214_I	247_V	1.878	1.00
58_N	78_Y	1.875	1.00
241_Q	345_Q	1.866	1.00
212_K	247_V	1.854	1.00
137_E	175_K	1.829	1.00
132_K	220_T	1.822	1.00
27_P	118_Q	1.820	1.00
309_T	333_A	1.813	1.00
218_A	294_V	1.787	1.00
239_I	268_Y	1.768	1.00
222_R	311_D	1.767	1.00
30_K	99_K	1.751	1.00
203_I	207_L	1.751	1.00
165_G	189_V	1.750	1.00
120_K	161_Y	1.742	1.00
302_N	354_K	1.698	1.00
196_Y	300_I	1.670	1.00
287_L	298_F	1.651	1.00
215_I	246_Y	1.645	1.00
102_I	376_I	1.616	1.00
187_I	372_L	1.616	1.00
307_F	331_G	1.599	1.00
32_T	57_L	1.594	1.00
28_E	31_V	1.592	1.00
136_L	178_G	1.590	1.00
163_T	372_L	1.590	1.00
37_F	42_K	1.590	1.00
103_T	121_C	1.562	1.00
281_L	294_V	1.560	1.00
337_S	341_I	1.557	1.00
216_L	284_A	1.552	1.00
247_V	270_K	1.546	1.00
357_S	361_N	1.535	1.00
179_I	182_N	1.528	1.00
47_E	373_L	1.525	1.00
103_T	107_F	1.522	1.00
40_N	189_V	1.511	1.00
286_I	344_I	1.510	1.00
213_K	245_E	1.506	1.00
167_E	171_N	1.505	1.00
277_L	294_V	1.502	1.00
34_L	48_Y	1.484	1.00
236_E	240_H	1.477	1.00
295_P	307_F	1.473	1.00
201_K	205_D	1.468	1.00
204_S	207_L	1.452	1.00
242_L	248_L	1.434	1.00
90_K	94_L	1.420	1.00
60_L	94_L	1.402	1.00
202_K	206_T	1.397	1.00
354_K	358_D	1.387	1.00
281_L	284_A	1.378	1.00
367_N	371_N	1.372	1.00
306_L	343_E	1.372	1.00
161_Y	375_F	1.358	1.00
291_Y	311_D	1.356	1.00
288_I	306_L	1.341	1.00
180_K	183_Q	1.340	1.00
323_D	360_W	1.325	1.00
93_Y	97_N	1.320	1.00
288_I	340_L	1.314	1.00
100_V	377_E	1.313	1.00
203_I	283_A	1.310	1.00
137_E	176_S	1.307	1.00
277_L	281_L	1.304	1.00
216_L	280_L	1.304	1.00
99_K	120_K	1.303	1.00
212_K	245_E	1.290	1.00
220_T	253_H	1.289	1.00
171_N	175_K	1.279	1.00
298_F	301_L	1.278	0.99
343_E	346_T	1.277	0.99
368_S	371_N	1.276	0.99
94_L	97_N	1.268	0.99
323_D	329_I	1.266	0.99
194_P	279_D	1.263	0.99
351_S	355_V	1.262	0.99
243_K	268_Y	1.260	0.99
214_I	249_F	1.251	0.99
339_S	342_N	1.236	0.99
308_Y	337_S	1.233	0.99
193_D	366_G	1.232	0.99
20_F	23_Q	1.232	0.99
342_N	346_T	1.231	0.99
122_I	376_I	1.230	0.99
313_K	335_Y	1.229	0.99
213_K	285_D	1.228	0.99
299_S	305_I	1.225	0.99
126_H	253_H	1.219	0.99
47_E	369_S	1.217	0.99
44_I	373_L	1.214	0.99
325_Y	329_I	1.209	0.99
352_K	355_V	1.202	0.99
170_A	184_L	1.193	0.99
100_V	120_K	1.193	0.99
200_K	204_S	1.193	0.99
33_L	62_T	1.185	0.99
48_Y	53_Y	1.183	0.99
286_I	306_L	1.181	0.99
335_Y	339_S	1.175	0.99
90_K	93_Y	1.172	0.99
215_I	286_I	1.168	0.99
31_V	60_L	1.166	0.99
48_Y	57_L	1.159	0.99
41_A	124_V	1.135	0.99
238_L	337_S	1.132	0.99
232_P	310_Y	1.126	0.99
28_E	58_N	1.120	0.99
28_E	97_N	1.114	0.99
312_L	316_Q	1.105	0.99
223_D	319_R	1.105	0.99
224_Y	314_L	1.099	0.98
130_S	189_V	1.094	0.98
100_V	376_I	1.089	0.98
89_I	93_Y	1.086	0.98
32_T	48_Y	1.082	0.98
126_H	293_S	1.076	0.98
159_Y	162_L	1.066	0.98
133_K	322_V	1.064	0.98
192_T	297_E	1.063	0.98
287_L	294_V	1.062	0.98
126_H	220_T	1.058	0.98
102_I	122_I	1.041	0.98
222_R	291_Y	1.037	0.98
239_I	266_S	1.035	0.98
167_E	170_A	1.029	0.98
176_S	322_V	1.027	0.98
311_D	315_Y	1.026	0.98
62_T	91_A	1.022	0.98
80_L	94_L	1.021	0.98
31_V	58_N	1.018	0.97
253_H	292_S	1.015	0.97
164_V	184_L	1.008	0.97
300_I	361_N	1.007	0.97
286_I	298_F	1.005	0.97
316_Q	326_L	1.002	0.97
306_L	340_L	1.001	0.97
39_A	191_L	0.991	0.97
132_K	253_H	0.982	0.97
132_K	320_G	0.982	0.97
309_T	329_I	0.974	0.97
188_G	193_D	0.974	0.97
132_K	293_S	0.972	0.97
128_N	361_N	0.972	0.97
101_I	121_C	0.967	0.97
41_A	104_D	0.958	0.96
168_E	359_R	0.957	0.96
49_E	76_D	0.947	0.96
237_Q	241_Q	0.944	0.96
234_T	237_Q	0.943	0.96
34_L	44_I	0.941	0.96
355_V	358_D	0.941	0.96
76_D	79_L	0.930	0.96
235_E	248_L	0.929	0.96
234_T	242_L	0.909	0.95
27_P	119_T	0.904	0.95
136_L	153_Q	0.900	0.95
132_K	315_Y	0.899	0.95
299_S	356_F	0.898	0.95
125_W	173_F	0.896	0.95
33_L	95_M	0.895	0.95
28_E	99_K	0.895	0.95
25_V	97_N	0.893	0.95
332_R	343_E	0.889	0.95
41_A	44_I	0.888	0.94
251_K	276_A	0.884	0.94
43_A	369_S	0.884	0.94
44_I	369_S	0.883	0.94
185_L	375_F	0.875	0.94
284_A	298_F	0.873	0.94
48_Y	59_I	0.872	0.94
233_F	238_L	0.871	0.94
327_S	359_R	0.871	0.94
321_L	325_Y	0.871	0.94
40_N	43_A	0.870	0.94
128_N	165_G	0.866	0.94
130_S	134_F	0.863	0.94
233_F	337_S	0.860	0.93
116_R	119_T	0.857	0.93
355_V	359_R	0.856	0.93
307_F	330_P	0.852	0.93
218_A	287_L	0.851	0.93
45_L	59_I	0.847	0.93
179_I	183_Q	0.845	0.93
334_C	339_S	0.842	0.93
217_Y	248_L	0.842	0.93
192_T	300_I	0.841	0.93
187_I	375_F	0.841	0.93
329_I	333_A	0.840	0.93
191_L	297_E	0.839	0.93
312_L	326_L	0.838	0.93
128_N	189_V	0.830	0.92
326_L	335_Y	0.828	0.92
41_A	61_Y	0.828	0.92
124_V	372_L	0.827	0.92
299_S	353_I	0.825	0.92
337_S	340_L	0.821	0.92
169_M	173_F	0.821	0.92
161_Y	164_V	0.820	0.92
315_Y	320_G	0.819	0.92
165_G	169_M	0.816	0.92
26_K	97_N	0.811	0.91
218_A	251_K	0.808	0.91
361_N	364_S	0.805	0.91
121_C	155_V	0.804	0.91
44_I	48_Y	0.799	0.91
135_G	138_D	0.798	0.91
239_I	243_K	0.791	0.90
131_L	295_P	0.790	0.90
204_S	283_A	0.789	0.90
125_W	162_L	0.785	0.90
220_T	292_S	0.784	0.90
206_T	279_D	0.779	0.90
220_T	293_S	0.777	0.89
186_K	363_Y	0.776	0.89
126_H	132_K	0.775	0.89
101_I	119_T	0.771	0.89
125_W	177_F	0.771	0.89
172_I	175_K	0.770	0.89
127_A	297_E	0.770	0.89
309_T	335_Y	0.769	0.89
243_K	246_Y	0.769	0.89
323_D	328_I	0.768	0.89
35_I	62_T	0.767	0.89
128_N	169_M	0.765	0.89
88_L	127_A	0.765	0.89
281_L	287_L	0.765	0.89
49_E	53_Y	0.762	0.89
347_P	350_Y	0.758	0.88
233_F	340_L	0.758	0.88
328_I	359_R	0.756	0.88
312_L	335_Y	0.756	0.88
20_F	24_W	0.747	0.88
42_K	276_A	0.745	0.87
313_K	316_Q	0.745	0.87
348_F	351_S	0.744	0.87
130_S	296_F	0.743	0.87
161_Y	183_Q	0.741	0.87
103_T	106_Y	0.741	0.87
211_R	247_V	0.739	0.87
200_K	283_A	0.738	0.87
348_F	353_I	0.734	0.87
239_I	267_D	0.733	0.87
336_D	340_L	0.733	0.87
173_F	184_L	0.731	0.86
215_I	248_L	0.730	0.86
111_S	254_P	0.730	0.86
22_L	25_V	0.730	0.86
88_L	91_A	0.728	0.86
40_N	191_L	0.727	0.86
195_Y	300_I	0.725	0.86
21_F	25_V	0.725	0.86
251_K	273_S	0.721	0.86
162_L	179_I	0.720	0.86
195_Y	301_L	0.719	0.86
25_V	28_E	0.718	0.85
104_D	124_V	0.716	0.85
161_Y	376_I	0.714	0.85
341_I	345_Q	0.712	0.85
19_A	23_Q	0.712	0.85
92_V	96_F	0.711	0.85
253_H	293_S	0.710	0.85
307_F	325_Y	0.706	0.84
168_E	172_I	0.703	0.84
330_P	356_F	0.698	0.84
148_D	152_F	0.695	0.84
34_L	41_A	0.691	0.83
350_Y	353_I	0.690	0.83
364_S	368_S	0.688	0.83
17_A	21_F	0.687	0.83
356_F	360_W	0.687	0.83
166_S	300_I	0.686	0.83
35_I	86_I	0.685	0.83
146_K	149_I	0.682	0.82
192_T	196_Y	0.682	0.82
43_A	194_P	0.680	0.82
127_A	293_S	0.678	0.82
41_A	45_L	0.677	0.82
45_L	49_E	0.675	0.82
193_D	371_N	0.671	0.81
242_L	341_I	0.671	0.81
130_S	165_G	0.670	0.81
49_E	52_Q	0.670	0.81
296_F	323_D	0.669	0.81
126_H	292_S	0.669	0.81
349_N	352_K	0.668	0.81
122_I	372_L	0.666	0.81
132_K	292_S	0.666	0.81
203_I	206_T	0.665	0.81
130_S	297_E	0.664	0.81
45_L	61_Y	0.664	0.81
373_L	377_E	0.663	0.81
151_R	155_V	0.662	0.80
51_G	54_S	0.659	0.80
338_E	341_I	0.656	0.80
163_T	190_P	0.655	0.80
316_Q	320_G	0.653	0.80
245_E	345_Q	0.653	0.80
106_Y	155_V	0.650	0.79
115_K	121_C	0.648	0.79
183_Q	375_F	0.648	0.79
126_H	189_V	0.648	0.79
91_A	112_V	0.645	0.79
252_L	260_I	0.644	0.79
202_K	205_D	0.643	0.79
184_L	318_K	0.641	0.78
241_Q	341_I	0.640	0.78
220_T	291_Y	0.640	0.78
245_E	268_Y	0.639	0.78
21_F	89_I	0.639	0.78
214_I	284_A	0.639	0.78
291_Y	315_Y	0.638	0.78
31_V	34_L	0.638	0.78
97_N	116_R	0.632	0.77
168_E	323_D	0.628	0.77
174_K	184_L	0.628	0.77
105_N	138_D	0.627	0.77
131_L	322_V	0.627	0.77
332_R	350_Y	0.627	0.77
175_K	322_V	0.625	0.77
128_N	166_S	0.624	0.76
45_L	77_A	0.622	0.76
26_K	116_R	0.621	0.76
170_A	174_K	0.621	0.76
237_Q	342_N	0.620	0.76
164_V	169_M	0.620	0.76
149_I	152_F	0.619	0.76
27_P	97_N	0.617	0.76
130_S	176_S	0.616	0.76
69_A	73_P	0.615	0.75
123_Q	159_Y	0.614	0.75
307_F	329_I	0.611	0.75
32_T	35_I	0.611	0.75
33_L	91_A	0.610	0.75
139_I	149_I	0.609	0.75
106_Y	123_Q	0.606	0.74
369_S	373_L	0.606	0.74
251_K	271_D	0.605	0.74
58_N	62_T	0.601	0.74
34_L	45_L	0.600	0.74
106_Y	156_Y	0.600	0.74
238_L	268_Y	0.599	0.74
193_D	369_S	0.599	0.74
37_F	45_L	0.599	0.74
237_Q	240_H	0.598	0.73
134_F	176_S	0.598	0.73
106_Y	121_C	0.597	0.73
132_K	291_Y	0.597	0.73
351_S	354_K	0.597	0.73
44_I	372_L	0.597	0.73
235_E	337_S	0.596	0.73
238_L	341_I	0.595	0.73
252_L	299_S	0.594	0.73
30_K	54_S	0.594	0.73
189_V	192_T	0.592	0.73
249_F	280_L	0.592	0.73
128_N	131_L	0.589	0.72
124_V	127_A	0.588	0.72
36_S	104_D	0.583	0.72
24_W	117_K	0.583	0.72
312_L	321_L	0.583	0.72
139_I	150_K	0.582	0.71
187_I	371_N	0.582	0.71
212_K	244_E	0.581	0.71
122_I	161_Y	0.581	0.71
15_L	18_I	0.580	0.71
72_F	79_L	0.580	0.71
272_V	280_L	0.579	0.71
42_K	61_Y	0.577	0.71
272_V	275_Y	0.577	0.71
131_L	307_F	0.576	0.71
69_A	79_L	0.575	0.70
237_Q	337_S	0.574	0.70
18_I	21_F	0.573	0.70
105_N	221_F	0.572	0.70
218_A	366_G	0.572	0.70
287_L	305_I	0.571	0.70
130_S	295_P	0.571	0.70
156_Y	159_Y	0.568	0.70
285_D	303_K	0.567	0.69
40_N	126_H	0.567	0.69
267_D	270_K	0.566	0.69
147_T	150_K	0.565	0.69
58_N	63_Q	0.565	0.69
59_I	63_Q	0.565	0.69
71_S	74_N	0.565	0.69
106_Y	127_A	0.564	0.69
14_F	17_A	0.564	0.69
40_N	293_S	0.564	0.69
101_I	107_F	0.564	0.69
28_E	98_S	0.564	0.69
40_N	127_A	0.564	0.69
243_K	267_D	0.563	0.69
252_L	256_I	0.563	0.69
60_L	91_A	0.562	0.69
177_F	189_V	0.562	0.69
357_S	364_S	0.562	0.69
200_K	282_M	0.561	0.69
107_F	112_V	0.561	0.69
320_G	323_D	0.560	0.68
195_Y	278_F	0.558	0.68
125_W	134_F	0.557	0.68
122_I	377_E	0.557	0.68
31_V	35_I	0.556	0.68
188_G	371_N	0.556	0.68
22_L	116_R	0.555	0.68
103_T	123_Q	0.554	0.68
32_T	100_V	0.554	0.68
314_L	318_K	0.552	0.67
165_G	295_P	0.550	0.67
14_F	19_A	0.550	0.67
165_G	173_F	0.549	0.67
43_A	278_F	0.548	0.67
26_K	29_S	0.547	0.67
155_V	252_L	0.547	0.67
101_I	115_K	0.547	0.67
127_A	130_S	0.546	0.67
365_D	368_S	0.546	0.67
40_N	104_D	0.544	0.66
110_T	121_C	0.544	0.66
304_P	366_G	0.544	0.66
18_I	22_L	0.543	0.66
101_I	113_L	0.540	0.66
221_F	255_A	0.539	0.66
76_D	80_L	0.538	0.65
280_L	284_A	0.537	0.65
27_P	99_K	0.537	0.65
315_Y	319_R	0.536	0.65
153_Q	157_S	0.535	0.65
264_Y	267_D	0.535	0.65
302_N	358_D	0.534	0.65
125_W	176_S	0.533	0.65
326_L	333_A	0.531	0.64
96_F	123_Q	0.531	0.64
353_I	356_F	0.531	0.64
261_D	265_S	0.530	0.64
100_V	122_I	0.528	0.64
47_E	52_Q	0.528	0.64
22_L	27_P	0.526	0.64
316_Q	321_L	0.525	0.64
238_L	248_L	0.524	0.63
192_T	295_P	0.524	0.63
172_I	322_V	0.523	0.63
157_S	182_N	0.523	0.63
193_D	330_P	0.522	0.63
214_I	283_A	0.521	0.63
106_Y	134_F	0.521	0.63
21_F	97_N	0.521	0.63
289_T	307_F	0.521	0.63
354_K	357_S	0.519	0.63
44_I	47_E	0.519	0.63
204_S	210_Q	0.518	0.63
209_I	247_V	0.518	0.63
303_K	353_I	0.517	0.62
156_Y	179_I	0.515	0.62
20_F	25_V	0.514	0.62
131_L	321_L	0.514	0.62
134_F	173_F	0.514	0.62
115_K	119_T	0.513	0.62
205_D	349_N	0.512	0.62
102_I	373_L	0.510	0.61
58_N	61_Y	0.508	0.61
131_L	137_E	0.508	0.61
305_I	331_G	0.507	0.61
202_K	346_T	0.507	0.61
15_L	19_A	0.506	0.61
296_F	299_S	0.505	0.61
130_S	322_V	0.504	0.60
33_L	94_L	0.504	0.60
95_M	98_S	0.504	0.60
121_C	254_P	0.502	0.60
218_A	278_F	0.502	0.60
135_G	155_V	0.501	0.60
37_F	43_A	0.501	0.60
193_D	331_G	0.501	0.60
295_P	305_I	0.501	0.60
340_L	343_E	0.500	0.60
319_R	322_V	0.500	0.60
146_K	150_K	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l7iA	4	0.9711	100	0.285	Contact Map
1vgvA	2	0.8714	99.3	0.835	Contact Map
4nesA	2	0.8425	99.3	0.836	Contact Map
3dzcA	2	0.8766	99.2	0.847	Contact Map
3ot5A	2	0.8766	99.1	0.851	Contact Map
4hwgA	5	0.8478	99.1	0.851	Contact Map
4fkzA	2	0.8714	99.1	0.853	Contact Map
1v4vA	2	0.8714	99	0.859	Contact Map
3froA	3	0.8898	98.7	0.872	Contact Map
3c48A	2	0.8898	98.7	0.875	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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