TAGA - BACSU - GREMLIN Contacts

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TAGA - Putative N-acetylmannosaminyltransferase

UniProt:	P27620	Sequences: MQTETIHNIPYVNSNLTSFIDYLEKHYIDQKIGAVISTVNPEIAFAAIKDRDYFDVLSSSNFILPDGIGVVMMSRLTNNRLQSRIAGYDVFKELLGVANKKKKRIFLYGAKKDVIKGVVSKISSEYPNIKIAGYSDGYVQDRTLVAKQIARANPDMVFVALGYPHQEKFIHNYRHLFPKAVSIGLGGSFDVFSGNVKRAPSWMIRLNLEWFYRLILNPWRWKRMLSIPKYALTVLKEEKNKKTFYPKPEKDHTKQI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	256 (232)
Sequences:	2520 (2073)
Seq/√Len:	136.1

ECOLI - WECG
BACSU - TAGA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
104_R	155_D	3.640	1.00
147_K	151_R	2.908	1.00
106_F	148_Q	2.869	1.00
104_R	130_K	2.857	1.00
112_K	136_D	2.761	1.00
106_F	133_G	2.687	1.00
117_G	195_N	2.514	1.00
112_K	116_K	2.411	1.00
135_S	148_Q	2.319	1.00
201_S	205_R	2.305	1.00
47_A	57_L	2.235	1.00
202_W	206_L	2.178	1.00
50_D	168_K	2.155	1.00
119_V	123_S	2.130	1.00
143_T	176_L	2.060	1.00
86_A	89_D	2.031	1.00
221_W	225_L	2.027	1.00
10_P	58_S	1.986	1.00
93_E	96_G	1.982	1.00
169_F	173_Y	1.974	1.00
170_I	184_G	1.963	1.00
157_V	179_K	1.938	1.00
150_A	178_P	1.888	1.00
187_G	191_V	1.872	1.00
16_L	93_E	1.853	1.00
115_I	134_Y	1.845	1.00
121_K	125_E	1.838	1.00
121_K	124_S	1.815	1.00
170_I	182_S	1.804	1.00
143_T	147_K	1.764	1.00
159_V	170_I	1.751	1.00
13_N	82_Q	1.733	1.00
99_N	128_N	1.721	1.00
117_G	120_S	1.721	1.00
142_R	169_F	1.694	1.00
146_A	150_A	1.689	1.00
95_L	122_I	1.673	1.00
147_K	150_A	1.647	1.00
214_L	224_M	1.614	1.00
142_R	172_N	1.614	1.00
54_F	58_S	1.610	1.00
43_I	163_Y	1.606	1.00
49_K	229_K	1.605	1.00
15_N	18_S	1.602	1.00
88_Y	188_S	1.587	1.00
23_L	181_V	1.582	1.00
24_E	101_K	1.581	1.00
17_T	93_E	1.576	1.00
104_R	132_A	1.558	1.00
91_F	158_F	1.555	1.00
111_K	114_V	1.542	1.00
19_F	62_F	1.460	1.00
107_L	122_I	1.452	1.00
48_I	233_T	1.443	1.00
52_D	168_K	1.429	1.00
45_F	226_S	1.427	1.00
56_V	168_K	1.425	1.00
111_K	138_Y	1.419	1.00
98_A	156_M	1.417	1.00
96_G	100_K	1.401	1.00
24_E	103_K	1.396	1.00
212_Y	216_L	1.395	1.00
24_E	97_V	1.392	1.00
21_D	97_V	1.385	1.00
55_D	59_S	1.384	1.00
41_P	69_G	1.382	1.00
111_K	195_N	1.375	1.00
115_I	119_V	1.369	1.00
103_K	155_D	1.356	1.00
224_M	227_I	1.346	1.00
35_V	170_I	1.342	1.00
88_Y	191_V	1.321	1.00
97_V	101_K	1.321	1.00
119_V	134_Y	1.320	1.00
37_S	60_S	1.307	1.00
117_G	121_K	1.300	1.00
68_I	71_V	1.300	1.00
29_D	101_K	1.294	1.00
198_R	209_E	1.288	1.00
214_L	221_W	1.287	1.00
38_T	43_I	1.284	1.00
91_F	188_S	1.268	1.00
73_M	230_Y	1.234	1.00
84_R	204_I	1.226	1.00
91_F	185_L	1.212	1.00
141_D	144_L	1.201	1.00
5_T	8_N	1.196	1.00
98_A	105_I	1.182	0.99
150_A	176_L	1.182	0.99
208_L	211_F	1.180	0.99
43_I	53_Y	1.177	0.99
106_F	149_I	1.176	0.99
217_N	220_R	1.168	0.99
38_T	64_L	1.167	0.99
73_M	234_V	1.164	0.99
157_V	182_S	1.162	0.99
107_L	189_F	1.149	0.99
33_G	174_R	1.142	0.99
142_R	146_A	1.141	0.99
25_K	30_Q	1.138	0.99
99_N	129_I	1.130	0.99
33_G	182_S	1.128	0.99
102_K	130_K	1.126	0.99
108_Y	139_V	1.125	0.99
91_F	192_F	1.122	0.99
197_K	212_Y	1.118	0.99
203_M	208_L	1.111	0.99
5_T	10_P	1.101	0.99
86_A	198_R	1.088	0.99
89_D	198_R	1.085	0.99
157_V	173_Y	1.081	0.99
22_Y	25_K	1.080	0.99
59_S	171_H	1.079	0.99
214_L	225_L	1.078	0.99
28_I	103_K	1.076	0.99
77_T	237_E	1.073	0.99
105_I	158_F	1.070	0.99
160_A	189_F	1.064	0.99
107_L	118_V	1.062	0.99
42_E	224_M	1.061	0.99
34_A	61_N	1.060	0.99
94_L	156_M	1.045	0.99
158_F	189_F	1.044	0.99
118_V	189_F	1.039	0.99
116_K	120_S	1.035	0.99
106_F	135_S	1.032	0.99
227_I	231_A	1.031	0.99
39_V	70_V	1.013	0.98
198_R	204_I	1.007	0.98
42_E	187_G	1.005	0.98
51_R	55_D	1.003	0.98
173_Y	176_L	1.002	0.98
33_G	180_A	1.001	0.98
199_A	204_I	0.998	0.98
45_F	233_T	0.997	0.98
113_D	116_K	0.989	0.98
92_K	125_E	0.976	0.98
41_P	68_I	0.965	0.98
19_F	64_L	0.961	0.98
14_S	19_F	0.954	0.98
43_I	57_L	0.954	0.98
23_L	36_I	0.953	0.98
120_S	124_S	0.953	0.98
200_P	212_Y	0.943	0.97
111_K	115_I	0.938	0.97
201_S	204_I	0.933	0.97
142_R	173_Y	0.930	0.97
21_D	25_K	0.928	0.97
95_L	105_I	0.924	0.97
95_L	158_F	0.918	0.97
11_Y	39_V	0.912	0.97
145_V	148_Q	0.910	0.97
88_Y	92_K	0.900	0.97
232_L	236_K	0.899	0.97
199_A	209_E	0.896	0.97
135_S	138_Y	0.894	0.96
42_E	46_A	0.890	0.96
71_V	84_R	0.890	0.96
39_V	43_I	0.888	0.96
41_P	226_S	0.886	0.96
185_L	189_F	0.871	0.96
136_D	139_V	0.869	0.96
203_M	206_L	0.867	0.96
104_R	153_N	0.867	0.96
197_K	216_L	0.861	0.96
148_Q	152_A	0.859	0.96
42_E	226_S	0.858	0.96
157_V	180_A	0.858	0.96
57_L	63_I	0.849	0.95
98_A	103_K	0.846	0.95
132_A	152_A	0.844	0.95
64_L	90_V	0.839	0.95
68_I	207_N	0.838	0.95
41_P	224_M	0.837	0.95
46_A	50_D	0.833	0.95
19_F	23_L	0.832	0.95
107_L	119_V	0.814	0.94
68_I	72_M	0.813	0.94
46_A	163_Y	0.812	0.94
110_A	115_I	0.810	0.94
16_L	20_I	0.805	0.94
196_V	217_N	0.805	0.94
52_D	172_N	0.804	0.94
36_I	181_V	0.801	0.94
47_A	53_Y	0.799	0.94
14_S	22_Y	0.792	0.93
61_N	174_R	0.792	0.93
36_I	183_I	0.791	0.93
41_P	227_I	0.787	0.93
51_R	54_F	0.786	0.93
35_V	174_R	0.783	0.93
137_G	187_G	0.780	0.93
148_Q	151_R	0.778	0.93
199_A	212_Y	0.777	0.93
35_V	60_S	0.775	0.92
91_F	95_L	0.770	0.92
233_T	236_K	0.765	0.92
89_D	209_E	0.761	0.92
157_V	169_F	0.756	0.92
114_V	193_S	0.755	0.91
38_T	163_Y	0.754	0.91
7_H	237_E	0.753	0.91
162_G	166_Q	0.751	0.91
135_S	139_V	0.743	0.91
97_V	103_K	0.734	0.90
177_F	182_S	0.732	0.90
39_V	63_I	0.730	0.90
158_F	185_L	0.728	0.90
12_V	22_Y	0.725	0.90
108_Y	149_I	0.724	0.90
15_N	82_Q	0.723	0.90
108_Y	135_S	0.722	0.90
190_D	195_N	0.722	0.90
155_D	180_A	0.721	0.90
231_A	235_L	0.718	0.89
15_N	83_S	0.717	0.89
88_Y	187_G	0.716	0.89
76_L	235_L	0.715	0.89
16_L	19_F	0.712	0.89
228_P	232_L	0.706	0.89
20_I	97_V	0.705	0.88
168_K	171_H	0.705	0.88
42_E	227_I	0.704	0.88
19_F	85_I	0.703	0.88
65_P	71_V	0.700	0.88
36_I	64_L	0.699	0.88
187_G	224_M	0.699	0.88
117_G	193_S	0.697	0.88
225_L	228_P	0.694	0.88
19_F	90_V	0.693	0.88
133_G	152_A	0.693	0.88
86_A	204_I	0.688	0.87
89_D	204_I	0.684	0.87
19_F	36_I	0.682	0.87
174_R	182_S	0.680	0.87
116_K	119_V	0.674	0.86
211_F	215_I	0.670	0.86
74_S	79_N	0.670	0.86
97_V	100_K	0.666	0.85
150_A	177_F	0.664	0.85
108_Y	157_V	0.663	0.85
46_A	226_S	0.663	0.85
78_N	82_Q	0.662	0.85
8_N	54_F	0.662	0.85
71_V	74_S	0.658	0.85
20_I	24_E	0.656	0.85
146_A	176_L	0.654	0.84
95_L	99_N	0.654	0.84
45_F	229_K	0.651	0.84
103_K	156_M	0.648	0.84
144_L	148_Q	0.647	0.84
74_S	81_L	0.646	0.84
191_V	199_A	0.645	0.84
219_W	224_M	0.642	0.83
137_G	191_V	0.640	0.83
79_N	82_Q	0.639	0.83
72_M	75_R	0.636	0.83
69_G	137_G	0.634	0.83
104_R	152_A	0.631	0.82
160_A	185_L	0.630	0.82
191_V	196_V	0.629	0.82
135_S	145_V	0.627	0.82
123_S	128_N	0.626	0.82
41_P	234_V	0.625	0.82
53_Y	57_L	0.625	0.82
69_G	72_M	0.624	0.82
87_G	185_L	0.622	0.81
37_S	57_L	0.620	0.81
92_K	96_G	0.620	0.81
16_L	90_V	0.619	0.81
146_A	173_Y	0.614	0.81
230_Y	234_V	0.611	0.80
96_G	125_E	0.609	0.80
188_S	191_V	0.609	0.80
110_A	190_D	0.607	0.80
108_Y	145_V	0.605	0.80
87_G	184_G	0.604	0.79
52_D	55_D	0.599	0.79
157_V	177_F	0.597	0.79
217_N	224_M	0.590	0.78
33_G	178_P	0.587	0.78
25_K	175_H	0.587	0.78
190_D	220_R	0.586	0.77
74_S	78_N	0.586	0.77
106_F	145_V	0.584	0.77
99_N	122_I	0.583	0.77
6_I	73_M	0.583	0.77
71_V	75_R	0.582	0.77
110_A	114_V	0.580	0.77
88_Y	137_G	0.578	0.76
177_F	180_A	0.578	0.76
147_K	176_L	0.577	0.76
72_M	207_N	0.577	0.76
40_N	43_I	0.577	0.76
102_K	128_N	0.576	0.76
66_D	213_R	0.576	0.76
116_K	134_Y	0.574	0.76
44_A	70_V	0.573	0.76
235_L	238_E	0.572	0.76
71_V	83_S	0.571	0.76
96_G	99_N	0.569	0.75
38_T	86_A	0.569	0.75
30_Q	34_A	0.569	0.75
214_L	222_K	0.567	0.75
169_F	214_L	0.566	0.75
55_D	58_S	0.564	0.75
99_N	126_Y	0.564	0.75
114_V	190_D	0.561	0.74
144_L	147_K	0.559	0.74
38_T	42_E	0.557	0.74
139_V	145_V	0.555	0.74
120_S	123_S	0.552	0.73
115_I	118_V	0.551	0.73
24_E	29_D	0.551	0.73
161_L	169_F	0.546	0.72
113_D	119_V	0.546	0.72
113_D	134_Y	0.544	0.72
45_F	48_I	0.544	0.72
202_W	205_R	0.542	0.72
69_G	73_M	0.541	0.72
122_I	129_I	0.536	0.71
99_N	127_P	0.531	0.70
53_Y	56_V	0.530	0.70
69_G	136_D	0.528	0.70
72_M	76_L	0.526	0.70
52_D	56_V	0.526	0.70
87_G	198_R	0.526	0.70
6_I	70_V	0.524	0.69
229_K	233_T	0.524	0.69
138_Y	165_H	0.523	0.69
102_K	129_I	0.523	0.69
71_V	86_A	0.523	0.69
9_I	44_A	0.522	0.69
169_F	177_F	0.520	0.69
157_V	170_I	0.517	0.68
231_A	234_V	0.516	0.68
206_L	215_I	0.516	0.68
37_S	63_I	0.514	0.68
55_D	120_S	0.514	0.68
28_I	180_A	0.513	0.68
122_I	192_F	0.511	0.67
10_P	63_I	0.510	0.67
40_N	66_D	0.505	0.66
48_I	237_E	0.505	0.66
68_I	84_R	0.503	0.66
51_R	124_S	0.502	0.66
35_V	182_S	0.500	0.66
211_F	214_L	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4jgiA	2	0.75	85.4	0.934	Contact Map
1y80A	1	0.4492	78	0.939	Contact Map
2zayA	1	0.4609	69.6	0.943	Contact Map
3cnbA	1	0.4688	68.6	0.944	Contact Map
4r3uC	1	0.4844	63.5	0.946	Contact Map
3g40A	2	0.6367	62.4	0.946	Contact Map
2qv0A	2	0.4688	55.1	0.948	Contact Map
1jbeA	1	0.4688	52.9	0.949	Contact Map
4le1A	2	0.5	51.3	0.949	Contact Map
3cu5A	2	0.5	49.2	0.95	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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