GREMLIN Database
YSXB - Uncharacterized protein YsxB
UniProt: P26942 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 112 (102)
Sequences: 751 (615)
Seq/√Len: 60.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
19_M41_V3.7631.00
8_R88_E3.6261.00
47_A89_G3.5961.00
26_A30_Q3.5671.00
2_I37_V3.4301.00
43_G93_S3.3611.00
19_M37_V2.4601.00
40_V93_S2.4401.00
90_M94_L2.3401.00
6_I91_I2.2781.00
42_F46_N2.2101.00
39_A97_I2.0761.00
18_E68_Y2.0491.00
40_V43_G1.8431.00
17_F69_F1.6500.99
86_L89_G1.6250.99
7_R16_S1.6170.99
14_I87_I1.5730.99
25_F32_L1.5670.99
24_N28_H1.5570.99
17_F44_A1.5050.98
71_F87_I1.4910.98
44_A86_L1.4760.98
51_L85_L1.4140.97
84_Q88_E1.4080.97
57_L70_E1.3390.96
43_G47_A1.3300.96
2_I23_A1.2870.95
36_G39_A1.2390.94
17_F45_V1.2290.94
47_A51_L1.1820.93
47_A85_L1.1680.92
24_N30_Q1.1210.91
42_F67_F1.1090.90
27_E30_Q1.0980.90
21_G65_G1.0950.90
28_H64_G1.0770.89
52_A89_G1.0610.88
100_D104_N1.0590.88
17_F67_F1.0580.88
43_G46_N1.0390.87
42_F60_I1.0340.87
19_M105_L1.0280.86
89_G93_S1.0190.86
48_V69_F1.0140.86
91_I95_E1.0030.85
45_V67_F1.0010.85
2_I65_G0.9900.84
54_F83_A0.9890.84
25_F30_Q0.9840.84
42_F58_L0.9710.83
103_D108_T0.9480.82
54_F80_R0.9440.81
82_K85_L0.9260.80
95_E98_E0.9250.80
39_A93_S0.9070.79
4_A107_V0.8880.77
43_G89_G0.8860.77
25_F28_H0.8810.77
9_S13_G0.8810.77
99_R103_D0.8780.76
3_Q108_T0.8770.76
4_A19_M0.8770.76
51_L89_G0.8630.75
3_Q102_K0.8600.75
44_A90_M0.8580.75
18_E66_Y0.8510.74
39_A43_G0.8400.73
32_L35_A0.8280.72
9_S15_L0.8200.71
6_I14_I0.8190.71
27_E103_D0.8140.71
41_V67_F0.8090.70
45_V69_F0.7940.69
48_V89_G0.7840.68
2_I19_M0.7810.68
40_V97_I0.7680.66
82_K88_E0.7530.65
56_P69_F0.7430.64
59_D68_Y0.7410.64
58_L64_G0.7370.63
17_F90_M0.7370.63
53_G88_E0.7210.61
12_K39_A0.7150.61
95_E107_V0.7040.60
47_A93_S0.6970.59
44_A93_S0.6960.59
26_A64_G0.6840.57
81_Q85_L0.6820.57
48_V83_A0.6780.57
46_N51_L0.6750.56
71_F83_A0.6710.56
90_M107_V0.6700.56
96_T107_V0.6660.55
46_N86_L0.6630.55
50_V95_E0.6620.55
50_V96_T0.6560.54
52_A80_R0.6550.54
2_I21_G0.6510.54
43_G86_L0.6490.53
80_R83_A0.6440.53
5_T13_G0.6430.53
7_R105_L0.6430.53
40_V90_M0.6410.53
13_G80_R0.6400.52
87_I108_T0.6370.52
47_A52_A0.6340.52
42_F96_T0.6230.51
14_I88_E0.6210.50
38_T42_F0.6180.50
51_L92_V0.6180.50
6_I90_M0.6120.49
97_I105_L0.6100.49
94_L98_E0.6080.49
40_V94_L0.6060.49
32_L105_L0.6020.48
70_E73_E0.6020.48
8_R14_I0.6010.48
96_T99_R0.5980.48
59_D66_Y0.5960.47
36_G97_I0.5930.47
16_S70_E0.5920.47
8_R91_I0.5880.47
6_I17_F0.5880.47
47_A92_V0.5760.45
10_H75_L0.5740.45
75_L80_R0.5710.45
43_G96_T0.5690.44
16_S95_E0.5640.44
43_G85_L0.5640.44
66_Y84_Q0.5630.44
43_G52_A0.5610.44
24_N57_L0.5580.43
16_S68_Y0.5560.43
6_I44_A0.5500.42
98_E105_L0.5470.42
88_E91_I0.5420.41
64_G67_F0.5350.41
17_F66_Y0.5340.41
54_F72_P0.5340.41
85_L89_G0.5320.40
43_G92_V0.5270.40
3_Q105_L0.5250.40
14_I91_I0.5230.39
3_Q106_R0.5160.39
25_F101_Y0.5120.38
91_I94_L0.5120.38
85_L100_D0.5120.38
57_L72_P0.5090.38
23_A46_N0.5080.38
73_E95_E0.5040.37
48_V70_E0.5020.37
9_S50_V0.5000.37
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2idlA 2 1 100 0.12 Contact Map
2g0iA 2 0.9821 100 0.127 Contact Map
4peoA 2 0.8393 100 0.14 Contact Map
1s12A 2 0.8214 100 0.322 Contact Map
1j5kA 1 0.5625 17.3 0.927 Contact Map
4qgeA 2 0 10.8 0.933 Contact Map
3ifeA 2 0.9018 9.6 0.935 Contact Map
3k6qA 2 0.9286 9.2 0.935 Contact Map
3ramA 4 0.9375 8 0.937 Contact Map
3rzaA 2 0.9286 6.6 0.94 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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