DPPE - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

DPPE - Dipeptide-binding protein DppE

UniProt:	P26906	Sequences: MKRVKKLWGMGLALGLSFALMGCTANEQAGKEGSHDKAKTSGEKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPEPAMAEKWSVSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASSAFLGYFIEGGEAYNSGKGKKDDVKVTAKDDRTLEVTLEAPQKYFLSVVSNPAYFPVNEKVDKDNPKWFAESDTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAMVSDRNTDYQMFQSGELDTAYVPAELSDQLLDQDNVNIVDQAGLYFYRFNVNMEPFQNENIRKAFAMAVDQEEIVKYVTKNNEKPAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQLLEKGMKEENYNKLPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSSFLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFSLMHQAEELLINEAPIIPVYFYNQVHLQNEQVKGIVRHPVGYIDLKWADKN	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	543 (485)
Sequences:	23046 (17527)
Seq/√Len:	795.9

ECOLI - OPPA YGIS MPPA SAPA DDPA DPPA GSIB NIKA YEJA YBAE SGRR
BACSU - DPPE OPPA APPA YHJP
HALSA - Q9HMW4 Q9HMI3
SULSO - Q97VK5 Q97UG7 Q97VF7 Q97UH5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
224_T	235_E	4.186	1.00
169_K	175_E	3.228	1.00
110_E	172_R	3.128	1.00
167_T	175_E	3.114	1.00
314_N	377_K	3.054	1.00
370_K	373_Q	3.013	1.00
389_A	418_D	2.977	1.00
126_E	130_K	2.880	1.00
477_Q	481_Q	2.796	1.00
170_D	173_T	2.782	1.00
222_K	235_E	2.651	1.00
326_E	330_K	2.607	1.00
308_E	311_Q	2.593	1.00
389_A	420_K	2.583	1.00
485_E	490_T	2.572	1.00
321_M	370_K	2.560	1.00
94_K	107_T	2.531	1.00
45_V	250_K	2.527	1.00
391_T	422_A	2.515	1.00
126_E	168_A	2.496	1.00
373_Q	377_K	2.447	1.00
391_T	420_K	2.355	1.00
167_T	177_T	2.355	1.00
103_T	175_E	2.344	1.00
324_D	327_E	2.325	1.00
474_E	477_Q	2.315	1.00
105_T	175_E	2.287	1.00
199_E	203_K	2.280	1.00
319_F	411_L	2.266	1.00
82_G	86_E	2.263	1.00
96_S	107_T	2.252	1.00
313_E	317_K	2.203	1.00
118_D	200_K	2.200	1.00
233_T	250_K	2.168	1.00
481_Q	494_L	2.162	1.00
490_T	493_S	2.153	1.00
103_T	177_T	2.151	1.00
113_K	239_T	2.136	1.00
79_T	95_W	2.113	1.00
120_V	218_N	2.113	1.00
314_N	317_K	2.108	1.00
113_K	119_P	2.105	1.00
123_G	168_A	2.092	1.00
412_K	418_D	2.076	1.00
115_T	237_S	2.030	1.00
98_S	102_K	2.012	1.00
265_M	270_E	1.998	1.00
314_N	374_L	1.998	1.00
107_T	173_T	1.996	1.00
164_V	179_E	1.990	1.00
82_G	88_E	1.983	1.00
487_D	490_T	1.962	1.00
227_K	230_D	1.936	1.00
76_E	90_A	1.935	1.00
470_W	505_E	1.926	1.00
45_V	252_K	1.923	1.00
307_M	439_Q	1.910	1.00
461_T	471_A	1.907	1.00
493_S	497_Q	1.870	1.00
97_V	104_Y	1.867	1.00
123_G	199_E	1.846	1.00
49_N	271_L	1.835	1.00
225_E	233_T	1.835	1.00
313_E	505_E	1.830	1.00
472_N	501_L	1.818	1.00
474_E	501_L	1.791	1.00
472_N	505_E	1.786	1.00
478_L	497_Q	1.786	1.00
165_K	177_T	1.786	1.00
235_E	250_K	1.785	1.00
112_A	120_V	1.778	1.00
461_T	476_D	1.767	1.00
322_A	415_L	1.757	1.00
303_F	509_I	1.750	1.00
222_K	238_D	1.748	1.00
475_Y	498_A	1.732	1.00
47_Y	252_K	1.731	1.00
225_E	231_S	1.729	1.00
93_E	110_E	1.727	1.00
129_W	176_V	1.719	1.00
408_Q	412_K	1.712	1.00
474_E	497_Q	1.711	1.00
473_K	477_Q	1.700	1.00
482_A	495_M	1.698	1.00
231_S	252_K	1.695	1.00
93_E	107_T	1.682	1.00
121_T	124_D	1.653	1.00
58_D	131_R	1.652	1.00
500_E	504_N	1.648	1.00
431_E	435_A	1.640	1.00
340_A	513_F	1.639	1.00
227_K	231_S	1.639	1.00
125_F	174_L	1.634	1.00
432_D	437_K	1.611	1.00
224_T	250_K	1.607	1.00
124_D	199_E	1.607	1.00
326_E	339_P	1.599	1.00
376_E	381_E	1.588	1.00
121_T	171_D	1.584	1.00
44_K	249_D	1.582	1.00
123_G	126_E	1.579	1.00
236_K	249_D	1.572	1.00
482_A	494_L	1.567	1.00
111_N	119_P	1.564	1.00
123_G	171_D	1.563	1.00
93_E	109_R	1.545	1.00
233_T	252_K	1.536	1.00
367_N	370_K	1.525	1.00
492_F	496_H	1.519	1.00
118_D	198_N	1.517	1.00
317_K	370_K	1.515	1.00
317_K	506_A	1.509	1.00
116_N	198_N	1.488	1.00
267_Q	283_Q	1.486	1.00
494_L	497_Q	1.480	1.00
497_Q	500_E	1.479	1.00
478_L	494_L	1.479	1.00
105_T	173_T	1.472	1.00
401_K	405_E	1.453	1.00
425_E	428_V	1.449	1.00
323_V	407_I	1.447	1.00
460_Q	480_K	1.429	1.00
372_K	382_E	1.427	1.00
282_D	285_L	1.423	1.00
485_E	494_L	1.422	1.00
306_N	469_G	1.413	1.00
256_V	265_M	1.411	1.00
313_E	504_N	1.406	1.00
369_S	372_K	1.405	1.00
98_S	103_T	1.405	1.00
303_F	440_F	1.400	1.00
493_S	496_H	1.394	1.00
122_A	168_A	1.392	1.00
79_T	106_F	1.377	1.00
471_A	476_D	1.368	1.00
310_F	390_I	1.362	1.00
221_F	248_L	1.360	1.00
224_T	233_T	1.360	1.00
410_K	414_S	1.355	1.00
501_L	505_E	1.349	1.00
198_N	201_V	1.348	1.00
372_K	376_E	1.341	1.00
76_E	241_W	1.341	1.00
320_A	506_A	1.328	1.00
394_Y	421_L	1.325	1.00
478_L	501_L	1.324	1.00
169_K	173_T	1.319	1.00
422_A	432_D	1.315	1.00
47_Y	254_A	1.310	1.00
490_T	494_L	1.309	1.00
319_F	417_V	1.306	1.00
481_Q	490_T	1.292	1.00
164_V	177_T	1.287	1.00
477_Q	480_K	1.286	1.00
168_A	171_D	1.285	1.00
113_K	237_S	1.284	1.00
46_L	273_T	1.274	1.00
180_A	484_N	1.274	1.00
76_E	218_N	1.269	1.00
126_E	166_V	1.268	1.00
329_V	339_P	1.267	1.00
47_Y	272_D	1.265	1.00
95_W	106_F	1.264	1.00
489_K	492_F	1.264	1.00
394_Y	423_N	1.247	1.00
116_N	200_K	1.244	1.00
242_D	245_T	1.242	1.00
80_R	90_A	1.241	1.00
291_N	522_E	1.239	1.00
307_M	311_Q	1.239	1.00
115_T	222_K	1.239	1.00
462_G	471_A	1.235	1.00
119_P	172_R	1.231	1.00
231_S	254_A	1.218	1.00
49_N	262_D	1.215	1.00
481_Q	485_E	1.208	1.00
64_N	67_S	1.207	1.00
374_L	377_K	1.205	1.00
107_T	172_R	1.204	1.00
327_E	410_K	1.204	1.00
120_V	196_P	1.204	1.00
474_E	478_L	1.197	1.00
406_A	410_K	1.196	1.00
130_K	134_D	1.191	1.00
234_M	253_W	1.190	1.00
265_M	271_L	1.190	1.00
436_L	469_G	1.175	1.00
315_I	378_G	1.174	1.00
392_L	419_V	1.174	1.00
368_E	372_K	1.173	1.00
98_S	105_T	1.170	1.00
176_V	185_F	1.165	1.00
89_P	95_W	1.160	1.00
272_D	523_Q	1.158	1.00
267_Q	287_Q	1.158	1.00
282_D	286_D	1.153	1.00
489_K	493_S	1.150	1.00
315_I	375_L	1.143	1.00
266_F	519_L	1.137	1.00
470_W	475_Y	1.136	1.00
501_L	504_N	1.136	1.00
115_T	239_T	1.135	1.00
23_C	26_N	1.135	1.00
346_P	513_F	1.133	1.00
390_I	419_V	1.133	1.00
426_W	430_L	1.132	1.00
289_N	522_E	1.131	1.00
109_R	112_A	1.128	1.00
329_V	337_E	1.127	1.00
302_R	441_S	1.125	1.00
112_A	218_N	1.123	1.00
373_Q	376_E	1.123	1.00
411_L	419_V	1.122	1.00
408_Q	421_L	1.122	1.00
98_S	101_N	1.117	1.00
166_V	174_L	1.117	1.00
80_R	88_E	1.116	1.00
119_P	171_D	1.115	1.00
313_E	506_A	1.114	1.00
451_D	491_R	1.112	1.00
96_S	105_T	1.111	1.00
291_N	520_Q	1.104	1.00
15_G	18_F	1.104	1.00
272_D	521_N	1.102	1.00
23_C	27_E	1.101	1.00
390_I	440_F	1.101	1.00
368_E	415_L	1.101	1.00
310_F	319_F	1.100	1.00
91_M	112_A	1.094	1.00
128_A	196_P	1.094	1.00
109_R	241_W	1.091	1.00
352_D	496_H	1.088	1.00
369_S	373_Q	1.083	1.00
338_K	515_N	1.081	1.00
333_T	512_Y	1.077	1.00
104_Y	185_F	1.076	1.00
130_K	133_L	1.073	1.00
16_L	19_A	1.073	1.00
478_L	498_A	1.070	1.00
480_K	484_N	1.069	1.00
478_L	481_Q	1.067	1.00
317_K	374_L	1.056	1.00
43_E	249_D	1.055	1.00
201_V	216_V	1.051	1.00
322_A	411_L	1.050	1.00
127_Y	199_E	1.048	1.00
408_Q	419_V	1.046	1.00
115_T	216_V	1.043	1.00
222_K	237_S	1.042	1.00
20_L	23_C	1.031	1.00
70_P	234_M	1.031	1.00
91_M	218_N	1.028	1.00
106_F	176_V	1.027	1.00
123_G	127_Y	1.026	1.00
368_E	414_S	1.025	1.00
481_Q	497_Q	1.018	1.00
317_K	321_M	1.017	1.00
125_F	196_P	1.008	1.00
462_G	476_D	1.007	1.00
407_I	411_L	1.006	1.00
100_D	103_T	1.005	1.00
46_L	248_L	1.004	1.00
380_K	383_N	1.001	1.00
370_K	374_L	0.995	1.00
327_E	331_Y	0.993	1.00
409_Q	414_S	0.991	1.00
394_Y	404_A	0.987	1.00
330_K	335_N	0.984	1.00
488_E	492_F	0.984	1.00
91_M	125_F	0.983	1.00
409_Q	412_K	0.982	1.00
428_V	432_D	0.969	1.00
424_M	432_D	0.967	1.00
104_Y	186_L	0.962	1.00
329_V	512_Y	0.959	1.00
93_E	172_R	0.958	1.00
236_K	246_V	0.957	1.00
200_K	204_D	0.957	1.00
264_Q	267_Q	0.956	1.00
105_T	169_K	0.954	1.00
92_A	106_F	0.948	1.00
46_L	524_V	0.946	1.00
280_L	283_Q	0.943	1.00
263_Y	267_Q	0.943	1.00
122_A	174_L	0.942	1.00
114_W	124_D	0.942	1.00
303_F	319_F	0.942	1.00
182_Q	188_V	0.942	1.00
261_T	265_M	0.940	1.00
475_Y	502_L	0.939	1.00
366_P	414_S	0.935	1.00
294_D	515_N	0.934	1.00
317_K	504_N	0.933	1.00
77_G	90_A	0.930	1.00
391_T	439_Q	0.927	1.00
404_A	421_L	0.924	1.00
320_A	325_Q	0.923	1.00
328_I	403_I	0.923	1.00
338_K	346_P	0.922	1.00
320_A	509_I	0.921	1.00
107_T	110_E	0.921	1.00
79_T	186_L	0.920	1.00
124_D	127_Y	0.919	1.00
393_T	432_D	0.918	1.00
104_Y	178_L	0.918	1.00
53_E	226_W	0.913	1.00
402_K	405_E	0.912	1.00
314_N	378_G	0.911	1.00
482_A	498_A	0.911	1.00
393_T	424_M	0.909	1.00
110_E	119_P	0.909	1.00
235_E	238_D	0.908	1.00
393_T	422_A	0.907	1.00
475_Y	501_L	0.905	1.00
178_L	185_F	0.904	1.00
481_Q	484_N	0.903	1.00
122_A	169_K	0.900	1.00
127_Y	202_D	0.888	1.00
42_G	247_K	0.887	1.00
470_W	507_P	0.887	1.00
271_L	274_A	0.887	1.00
79_T	87_P	0.887	1.00
496_H	500_E	0.887	1.00
475_Y	479_I	0.883	1.00
263_Y	284_L	0.882	1.00
74_I	234_M	0.880	1.00
321_M	364_I	0.878	1.00
147_F	182_Q	0.868	1.00
433_Q	441_S	0.868	1.00
453_I	483_K	0.867	1.00
312_N	378_G	0.866	1.00
116_N	216_V	0.863	1.00
302_R	468_T	0.861	1.00
324_D	410_K	0.859	1.00
226_W	232_I	0.855	1.00
107_T	170_D	0.851	1.00
79_T	92_A	0.850	1.00
352_D	500_E	0.847	1.00
479_I	498_A	0.847	1.00
333_T	337_E	0.845	1.00
401_K	423_N	0.845	1.00
76_E	240_Y	0.843	1.00
185_F	189_V	0.843	1.00
498_A	501_L	0.842	1.00
77_G	195_F	0.842	1.00
281_S	285_L	0.841	1.00
211_E	215_F	0.839	1.00
453_I	457_E	0.837	1.00
397_K	400_H	0.837	1.00
285_L	294_D	0.833	1.00
97_V	101_N	0.829	1.00
115_T	217_G	0.827	1.00
293_V	520_Q	0.822	1.00
130_K	166_V	0.820	1.00
371_A	415_L	0.817	1.00
325_Q	339_P	0.816	1.00
388_P	417_V	0.815	1.00
321_M	374_L	0.815	1.00
290_V	519_L	0.814	1.00
221_F	246_V	0.812	1.00
282_D	334_K	0.811	1.00
184_Y	451_D	0.810	1.00
287_Q	290_V	0.810	1.00
102_K	180_A	0.809	1.00
312_N	380_K	0.807	1.00
115_T	223_L	0.803	1.00
381_E	388_P	0.803	1.00
256_V	271_L	0.802	1.00
277_P	280_L	0.802	1.00
374_L	378_G	0.801	1.00
73_N	234_M	0.801	1.00
473_K	476_D	0.799	1.00
106_F	186_L	0.796	1.00
497_Q	501_L	0.796	1.00
126_E	174_L	0.795	1.00
74_I	223_L	0.794	1.00
102_K	177_T	0.791	1.00
266_F	274_A	0.787	1.00
284_L	290_V	0.786	1.00
301_Y	407_I	0.783	1.00
297_G	446_L	0.775	1.00
112_A	172_R	0.775	1.00
236_K	248_L	0.775	1.00
207_K	210_A	0.775	1.00
16_L	20_L	0.772	1.00
262_D	274_A	0.771	1.00
48_V	273_T	0.771	1.00
315_I	380_K	0.768	1.00
234_M	251_V	0.764	1.00
23_C	29_A	0.764	1.00
352_D	360_G	0.764	1.00
91_M	120_V	0.763	1.00
18_F	21_M	0.763	1.00
17_S	20_L	0.763	1.00
223_L	232_I	0.761	1.00
60_P	131_R	0.760	1.00
236_K	245_T	0.759	1.00
19_A	22_G	0.759	1.00
428_V	431_E	0.758	1.00
83_K	528_V	0.758	1.00
254_A	265_M	0.757	1.00
168_A	174_L	0.756	1.00
380_K	388_P	0.755	1.00
264_Q	268_S	0.754	1.00
53_E	255_M	0.753	1.00
457_E	483_K	0.752	1.00
96_S	99_K	0.752	1.00
289_N	521_N	0.750	1.00
111_N	172_R	0.746	1.00
323_V	328_I	0.746	1.00
75_M	217_G	0.745	1.00
238_D	249_D	0.744	1.00
102_K	164_V	0.743	1.00
163_D	166_V	0.743	1.00
99_K	105_T	0.742	1.00
134_D	137_K	0.739	1.00
324_D	366_P	0.738	1.00
318_A	375_L	0.737	1.00
405_E	408_Q	0.737	1.00
343_F	510_P	0.737	1.00
60_P	132_M	0.736	1.00
12_L	18_F	0.728	1.00
112_A	241_W	0.727	1.00
466_N	469_G	0.725	1.00
350_Q	492_F	0.725	1.00
62_G	71_L	0.724	1.00
90_A	241_W	0.724	1.00
301_Y	440_F	0.721	1.00
393_T	438_F	0.721	1.00
41_S	44_K	0.721	1.00
353_G	360_G	0.720	1.00
453_I	495_M	0.720	1.00
322_A	368_E	0.719	1.00
40_T	247_K	0.719	1.00
424_M	428_V	0.715	1.00
26_N	29_A	0.714	1.00
321_M	366_P	0.714	1.00
328_I	406_A	0.714	1.00
392_L	404_A	0.712	1.00
305_V	507_P	0.711	1.00
124_D	128_A	0.711	1.00
319_F	509_I	0.710	1.00
13_A	17_S	0.708	1.00
284_L	519_L	0.708	1.00
44_K	248_L	0.708	1.00
342_A	499_E	0.708	1.00
306_N	436_L	0.707	1.00
23_C	28_Q	0.705	1.00
448_D	454_S	0.703	1.00
46_L	251_V	0.703	1.00
25_A	28_Q	0.699	1.00
323_V	411_L	0.698	1.00
128_A	197_V	0.698	1.00
460_Q	479_I	0.698	1.00
394_Y	401_K	0.696	1.00
412_K	417_V	0.696	1.00
127_Y	203_K	0.695	1.00
200_K	203_K	0.694	1.00
53_E	228_H	0.694	1.00
95_W	186_L	0.693	1.00
405_E	421_L	0.692	1.00
375_L	380_K	0.691	1.00
27_E	30_G	0.690	1.00
412_K	419_V	0.689	1.00
122_A	126_E	0.684	1.00
78_L	92_A	0.684	1.00
405_E	409_Q	0.682	1.00
520_Q	527_I	0.682	1.00
222_K	239_T	0.681	1.00
108_I	120_V	0.680	1.00
362_D	365_K	0.679	1.00
476_D	480_K	0.678	1.00
299_Y	400_H	0.678	1.00
319_F	390_I	0.678	1.00
398_P	402_K	0.677	1.00
73_N	251_V	0.675	1.00
74_I	217_G	0.675	1.00
49_N	256_V	0.673	1.00
392_L	442_Q	0.672	1.00
411_L	440_F	0.669	1.00
183_K	491_R	0.668	1.00
382_E	388_P	0.667	1.00
235_E	249_D	0.667	1.00
11_G	14_L	0.666	1.00
24_T	27_E	0.663	1.00
521_N	524_V	0.663	1.00
106_F	189_V	0.663	1.00
375_L	415_L	0.660	1.00
70_P	232_I	0.659	1.00
19_A	23_C	0.656	1.00
256_V	262_D	0.656	1.00
258_D	261_T	0.655	1.00
480_K	483_K	0.655	1.00
328_I	407_I	0.654	1.00
491_R	495_M	0.654	1.00
168_A	175_E	0.653	1.00
383_N	388_P	0.653	1.00
259_R	262_D	0.652	1.00
55_T	64_N	0.651	1.00
452_P	455_F	0.651	1.00
309_P	388_P	0.650	1.00
451_D	454_S	0.646	1.00
349_T	488_E	0.645	1.00
75_M	215_F	0.645	1.00
121_T	172_R	0.645	1.00
322_A	366_P	0.645	1.00
429_F	441_S	0.644	1.00
126_E	167_T	0.644	1.00
129_W	189_V	0.644	1.00
320_A	364_I	0.643	1.00
12_L	15_G	0.643	1.00
326_E	329_V	0.643	1.00
470_W	501_L	0.643	1.00
166_V	176_V	0.642	1.00
223_L	226_W	0.642	1.00
201_V	205_N	0.641	1.00
106_F	174_L	0.640	1.00
321_M	365_K	0.640	1.00
205_N	214_T	0.639	1.00
288_D	522_E	0.639	1.00
411_L	417_V	0.637	1.00
312_N	315_I	0.637	1.00
102_K	181_P	0.634	1.00
232_I	255_M	0.634	1.00
319_F	440_F	0.634	1.00
130_K	165_K	0.632	1.00
133_L	179_E	0.632	1.00
81_L	87_P	0.630	1.00
398_P	401_K	0.629	1.00
336_N	517_V	0.629	1.00
424_M	429_F	0.629	1.00
375_L	417_V	0.627	1.00
307_M	310_F	0.624	1.00
74_I	215_F	0.622	1.00
147_F	180_A	0.621	1.00
14_L	17_S	0.621	1.00
395_S	400_H	0.621	1.00
21_M	24_T	0.620	1.00
198_N	216_V	0.620	1.00
81_L	190_S	0.619	1.00
310_F	315_I	0.618	1.00
273_T	524_V	0.618	1.00
114_W	120_V	0.617	1.00
147_F	179_E	0.617	1.00
122_A	172_R	0.617	1.00
375_L	378_G	0.615	1.00
213_D	228_H	0.615	1.00
97_V	186_L	0.614	1.00
488_E	491_R	0.613	1.00
59_P	197_V	0.611	1.00
114_W	196_P	0.611	1.00
242_D	246_V	0.611	1.00
305_V	468_T	0.608	1.00
101_N	105_T	0.608	1.00
494_L	498_A	0.604	1.00
75_M	218_N	0.603	1.00
230_D	254_A	0.603	1.00
221_F	236_K	0.601	1.00
127_Y	131_R	0.601	1.00
315_I	388_P	0.600	1.00
68_W	192_P	0.600	1.00
114_W	217_G	0.599	1.00
237_S	240_Y	0.597	1.00
135_P	138_G	0.597	1.00
411_L	415_L	0.597	1.00
395_S	429_F	0.596	1.00
269_G	521_N	0.596	1.00
303_F	310_F	0.595	1.00
306_N	311_Q	0.594	1.00
372_K	415_L	0.592	1.00
486_A	490_T	0.592	1.00
122_A	170_D	0.591	1.00
108_I	172_R	0.590	1.00
13_A	16_L	0.589	1.00
348_F	351_P	0.588	1.00
15_G	19_A	0.587	1.00
363_L	503_I	0.587	1.00
403_I	512_Y	0.586	1.00
396_T	401_K	0.586	1.00
507_P	510_P	0.586	1.00
266_F	521_N	0.584	1.00
263_Y	280_L	0.584	1.00
285_L	336_N	0.583	1.00
44_K	247_K	0.581	1.00
50_N	253_W	0.581	1.00
120_V	172_R	0.581	1.00
281_S	292_I	0.580	1.00
300_F	508_I	0.579	1.00
114_W	218_N	0.578	1.00
266_F	290_V	0.578	1.00
301_Y	511_V	0.578	1.00
276_V	519_L	0.578	1.00
376_E	380_K	0.577	1.00
78_L	125_F	0.576	1.00
87_P	186_L	0.576	1.00
376_E	382_E	0.576	1.00
426_W	443_S	0.576	1.00
361_G	503_I	0.575	1.00
336_N	515_N	0.574	1.00
323_V	509_I	0.574	1.00
307_M	437_K	0.572	1.00
329_V	333_T	0.571	1.00
273_T	520_Q	0.571	1.00
403_I	407_I	0.570	1.00
14_L	18_F	0.570	1.00
407_I	419_V	0.569	1.00
130_K	199_E	0.569	1.00
55_T	67_S	0.568	1.00
475_Y	478_L	0.567	1.00
380_K	417_V	0.567	1.00
89_P	94_K	0.565	1.00
121_T	199_E	0.564	1.00
260_N	264_Q	0.564	1.00
298_L	340_A	0.564	1.00
62_G	67_S	0.563	1.00
248_L	524_V	0.563	1.00
299_Y	403_I	0.563	1.00
118_D	124_D	0.562	1.00
360_G	496_H	0.557	1.00
11_G	15_G	0.557	1.00
12_L	16_L	0.557	1.00
254_A	270_E	0.555	1.00
506_A	509_I	0.554	1.00
120_V	128_A	0.553	1.00
114_W	200_K	0.553	1.00
366_P	410_K	0.553	1.00
266_F	271_L	0.552	1.00
118_D	199_E	0.552	1.00
332_V	406_A	0.551	1.00
461_T	480_K	0.551	1.00
352_D	499_E	0.551	1.00
321_M	367_N	0.549	1.00
57_F	232_I	0.548	1.00
323_V	511_V	0.548	1.00
76_E	242_D	0.547	1.00
40_T	44_K	0.546	1.00
312_N	379_M	0.545	1.00
321_M	371_A	0.544	1.00
143_F	146_Y	0.543	1.00
499_E	503_I	0.542	1.00
326_E	365_K	0.542	1.00
57_F	226_W	0.542	1.00
327_E	406_A	0.541	1.00
301_Y	392_L	0.540	1.00
45_V	233_T	0.540	1.00
349_T	352_D	0.540	1.00
459_F	508_I	0.540	1.00
47_Y	271_L	0.540	1.00
180_A	480_K	0.539	1.00
114_W	121_T	0.538	1.00
482_A	491_R	0.538	1.00
328_I	511_V	0.537	1.00
119_P	124_D	0.537	1.00
431_E	434_K	0.536	1.00
10_M	13_A	0.536	1.00
80_R	242_D	0.535	1.00
370_K	377_K	0.534	1.00
273_T	518_H	0.534	1.00
406_A	409_Q	0.534	1.00
56_S	212_S	0.532	1.00
478_L	482_A	0.532	1.00
43_E	247_K	0.532	1.00
368_E	375_L	0.531	1.00
472_N	475_Y	0.531	1.00
283_Q	286_D	0.530	1.00
101_N	486_A	0.530	1.00
367_N	373_Q	0.529	1.00
288_D	291_N	0.529	1.00
116_N	201_V	0.528	1.00
215_F	223_L	0.528	1.00
260_N	280_L	0.528	1.00
223_L	234_M	0.526	1.00
120_V	125_F	0.525	1.00
485_E	491_R	0.524	1.00
485_E	488_E	0.524	1.00
64_N	426_W	0.524	1.00
99_K	103_T	0.523	1.00
12_L	19_A	0.523	1.00
445_F	448_D	0.523	1.00
349_T	492_F	0.522	1.00
291_N	525_K	0.522	1.00
468_T	508_I	0.522	1.00
303_F	320_A	0.522	1.00
317_K	364_I	0.521	1.00
315_I	319_F	0.521	1.00
518_H	527_I	0.521	1.00
163_D	179_E	0.521	1.00
129_W	166_V	0.520	1.00
299_Y	514_Y	0.520	1.00
281_S	517_V	0.519	1.00
410_K	415_L	0.519	1.00
294_D	336_N	0.518	1.00
396_T	423_N	0.517	1.00
95_W	107_T	0.516	1.00
306_N	471_A	0.516	1.00
22_G	25_A	0.515	1.00
221_F	250_K	0.515	1.00
108_I	112_A	0.514	1.00
71_L	74_I	0.513	1.00
40_T	43_E	0.513	1.00
243_K	246_V	0.512	1.00
426_W	429_F	0.512	1.00
142_A	145_G	0.511	1.00
122_A	171_D	0.511	1.00
432_D	435_A	0.511	1.00
197_V	202_D	0.510	1.00
226_W	255_M	0.509	1.00
163_D	176_V	0.509	1.00
103_T	167_T	0.509	1.00
419_V	440_F	0.509	1.00
21_M	25_A	0.508	1.00
93_E	108_I	0.507	1.00
299_Y	512_Y	0.507	1.00
70_P	253_W	0.506	1.00
50_N	54_P	0.505	1.00
43_E	250_K	0.505	1.00
309_P	439_Q	0.504	1.00
265_M	268_S	0.504	1.00
18_F	23_C	0.504	1.00
127_Y	200_K	0.503	1.00
24_T	28_Q	0.503	1.00
496_H	499_E	0.503	1.00
448_D	455_F	0.503	1.00
378_G	383_N	0.502	1.00
430_L	433_Q	0.502	1.00
73_N	253_W	0.502	1.00
130_K	168_A	0.501	1.00
77_G	218_N	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4fajA	1	0.9098	100	0.141	Contact Map
4gl8A	1	0.9042	100	0.166	Contact Map
4qflA	1	0.8913	100	0.169	Contact Map
3zs6A	1	0.919	100	0.171	Contact Map
4tozA	1	0.9319	100	0.175	Contact Map
1jetA	1	0.9337	100	0.182	Contact Map
1xocA	2	0.884	100	0.186	Contact Map
4wedA	1	0.8471	100	0.198	Contact Map
3drfA	1	0.9006	100	0.2	Contact Map
2wolA	1	0.9337	100	0.204	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0141 seconds.