SP0J - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SP0J - Stage 0 sporulation protein J

UniProt:	P26497	Sequences: MAKGLGKGINALFNQVDLSEETVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQPLIVRKSLKGYDIVAGERRFRAAKLAGLDTVPAIVRELSEALMREIALLENLQREDLSPLEEAQAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLLTLPENIQQLIAEGTLSMGHGRTLLGLKNKNKLEPLVQKVIAEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDAVLKERESYLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLDRILELLSERES	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	282 (252)
Sequences:	5114 (3733)
Seq/√Len:	235.1

BACSU - SP0J NOC

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
25_E	91_T	4.119	1.00
128_D	132_K	3.793	1.00
197_K	201_E	3.362	1.00
100_S	103_L	3.223	1.00
198_V	208_L	3.191	1.00
74_I	81_F	3.169	1.00
51_K	86_L	3.078	1.00
164_N	192_E	2.812	1.00
168_L	195_V	2.655	1.00
63_L	92_V	2.655	1.00
31_L	74_I	2.595	1.00
59_I	84_A	2.592	1.00
125_Q	166_Q	2.563	1.00
27_K	30_D	2.533	1.00
148_S	151_H	2.453	1.00
26_I	94_A	2.390	1.00
46_A	116_E	2.389	1.00
138_Q	153_A	2.331	1.00
48_A	86_L	2.325	1.00
26_I	65_V	2.319	1.00
48_A	52_E	2.234	1.00
167_Q	171_E	2.179	1.00
47_L	51_K	2.127	1.00
203_L	211_L	2.109	1.00
81_F	85_K	2.104	1.00
65_V	94_A	2.082	1.00
66_R	73_D	2.080	1.00
44_D	86_L	2.078	1.00
99_L	107_I	2.040	1.00
129_S	133_H	1.988	1.00
47_L	86_L	1.977	1.00
59_I	93_P	1.969	1.00
28_I	81_F	1.952	1.00
253_R	264_F	1.934	1.00
121_L	166_Q	1.917	1.00
187_N	190_K	1.913	1.00
52_E	55_L	1.898	1.00
63_L	74_I	1.890	1.00
140_Q	143_K	1.862	1.00
131_L	141_L	1.856	1.00
31_L	65_V	1.795	1.00
44_D	48_A	1.768	1.00
32_R	73_D	1.759	1.00
84_A	89_L	1.751	1.00
207_Q	210_Q	1.722	1.00
27_K	91_T	1.677	1.00
196_Q	200_A	1.656	1.00
169_I	179_G	1.600	1.00
76_A	111_E	1.568	1.00
84_A	87_A	1.561	1.00
197_K	211_L	1.561	1.00
66_R	101_E	1.553	1.00
150_P	153_A	1.541	1.00
125_Q	170_A	1.534	1.00
168_L	199_I	1.526	1.00
48_A	51_K	1.523	1.00
32_R	68_S	1.519	1.00
155_H	176_M	1.518	1.00
60_L	64_I	1.514	1.00
123_E	147_K	1.506	1.00
119_S	170_A	1.502	1.00
63_L	94_A	1.483	1.00
194_L	211_L	1.482	1.00
30_D	71_G	1.481	1.00
178_H	205_V	1.481	1.00
127_Y	145_L	1.465	1.00
38_P	108_A	1.434	1.00
34_N	104_M	1.430	1.00
230_K	238_E	1.421	1.00
139_E	143_K	1.418	1.00
68_S	73_D	1.409	1.00
78_E	82_R	1.400	1.00
163_E	166_Q	1.349	1.00
59_I	92_V	1.347	1.00
181_T	208_L	1.346	1.00
66_R	104_M	1.343	1.00
34_N	108_A	1.340	1.00
46_A	49_E	1.333	1.00
165_I	195_V	1.331	1.00
162_P	192_E	1.328	1.00
236_E	240_Y	1.302	1.00
54_V	59_I	1.298	1.00
67_K	98_E	1.277	1.00
258_G	264_F	1.267	1.00
35_P	73_D	1.256	1.00
123_E	155_H	1.255	1.00
195_V	199_I	1.254	1.00
75_V	99_L	1.254	1.00
178_H	181_T	1.249	1.00
106_E	144_R	1.248	1.00
128_D	160_T	1.246	1.00
192_E	196_Q	1.236	1.00
43_D	46_A	1.231	1.00
127_Y	141_L	1.229	1.00
68_S	71_G	1.220	1.00
167_Q	170_A	1.199	1.00
57_H	106_E	1.170	1.00
142_A	152_I	1.169	1.00
32_R	71_G	1.169	1.00
190_K	193_P	1.149	1.00
233_V	236_E	1.141	1.00
252_K	261_E	1.139	1.00
185_L	194_L	1.129	1.00
57_H	103_L	1.123	1.00
28_I	84_A	1.117	1.00
194_L	215_L	1.117	1.00
51_K	87_A	1.117	1.00
141_L	152_I	1.114	1.00
164_N	196_Q	1.096	1.00
198_V	203_L	1.088	1.00
247_T	262_I	1.087	1.00
184_G	216_N	1.087	1.00
59_I	87_A	1.067	1.00
51_K	55_L	1.064	1.00
131_L	138_Q	1.056	1.00
254_Q	259_K	1.048	1.00
131_L	156_L	1.041	1.00
29_A	85_K	1.039	1.00
212_I	216_N	1.038	1.00
174_L	195_V	1.038	1.00
24_E	96_V	1.036	1.00
54_V	84_A	1.035	1.00
52_E	56_Q	1.030	1.00
176_M	180_R	1.027	1.00
235_K	239_S	1.026	1.00
259_K	263_E	1.026	1.00
40_K	125_Q	1.019	1.00
204_N	207_Q	0.996	1.00
168_L	173_T	0.991	1.00
208_L	211_L	0.983	1.00
208_L	212_I	0.983	1.00
210_Q	213_Q	0.982	1.00
137_T	140_Q	0.970	1.00
25_E	93_P	0.969	1.00
154_N	180_R	0.968	1.00
111_E	115_R	0.966	1.00
59_I	63_L	0.965	1.00
42_F	82_R	0.964	1.00
247_T	265_F	0.961	1.00
42_F	78_E	0.956	1.00
33_P	81_F	0.952	1.00
210_Q	214_Q	0.945	1.00
138_Q	149_R	0.939	1.00
127_Y	147_K	0.939	1.00
230_K	235_K	0.936	1.00
56_Q	144_R	0.936	1.00
203_L	208_L	0.935	1.00
250_N	261_E	0.905	1.00
31_L	92_V	0.904	1.00
239_S	243_N	0.903	1.00
34_N	73_D	0.903	1.00
151_H	155_H	0.900	1.00
84_A	92_V	0.900	1.00
252_K	259_K	0.890	0.99
28_I	85_K	0.890	0.99
168_L	174_L	0.888	0.99
181_T	205_V	0.887	0.99
109_L	126_A	0.886	0.99
241_L	245_F	0.884	0.99
166_Q	170_A	0.877	0.99
33_P	78_E	0.869	0.99
31_L	94_A	0.862	0.99
67_K	70_K	0.862	0.99
64_I	76_A	0.861	0.99
234_L	253_R	0.857	0.99
238_E	242_Q	0.846	0.99
163_E	167_Q	0.842	0.99
235_K	238_E	0.841	0.99
105_R	129_S	0.838	0.99
206_R	209_E	0.837	0.99
162_P	165_I	0.831	0.99
54_V	89_L	0.826	0.99
245_F	262_I	0.822	0.99
99_L	103_L	0.817	0.99
47_L	87_A	0.816	0.99
51_K	54_V	0.815	0.99
147_K	151_H	0.805	0.99
52_E	143_K	0.804	0.99
84_A	93_P	0.802	0.99
23_V	94_A	0.794	0.99
157_R	183_L	0.794	0.99
56_Q	143_K	0.792	0.99
27_K	90_D	0.792	0.99
194_L	208_L	0.786	0.99
60_L	107_I	0.784	0.99
64_I	95_I	0.774	0.99
168_L	196_Q	0.770	0.98
151_H	176_M	0.767	0.98
176_M	181_T	0.766	0.98
205_V	209_E	0.762	0.98
26_I	30_D	0.756	0.98
230_K	234_L	0.755	0.98
177_G	206_R	0.753	0.98
50_L	79_R	0.750	0.98
174_L	179_G	0.748	0.98
253_R	256_K	0.746	0.98
232_A	236_E	0.740	0.98
62_P	95_I	0.737	0.98
55_L	87_A	0.737	0.98
63_L	81_F	0.736	0.98
212_I	215_L	0.735	0.98
233_V	237_R	0.730	0.98
169_I	174_L	0.720	0.98
120_P	158_L	0.718	0.98
178_H	182_L	0.717	0.98
149_R	153_A	0.715	0.98
26_I	31_L	0.714	0.97
211_L	214_Q	0.711	0.97
131_L	153_A	0.707	0.97
73_D	104_M	0.705	0.97
231_D	235_K	0.704	0.97
110_L	114_Q	0.704	0.97
147_K	152_I	0.703	0.97
24_E	72_Y	0.703	0.97
60_L	110_L	0.702	0.97
248_T	263_E	0.701	0.97
39_R	111_E	0.698	0.97
102_A	133_H	0.696	0.97
253_R	257_K	0.696	0.97
53_S	110_L	0.695	0.97
261_E	265_F	0.693	0.97
158_L	166_Q	0.692	0.97
99_L	104_M	0.688	0.97
257_K	263_E	0.686	0.97
136_L	144_R	0.686	0.97
175_S	178_H	0.681	0.97
162_P	187_N	0.680	0.97
51_K	83_A	0.676	0.97
28_I	92_V	0.675	0.96
226_K	229_V	0.673	0.96
112_N	115_R	0.671	0.96
185_L	190_K	0.668	0.96
253_R	265_F	0.661	0.96
138_Q	142_A	0.660	0.96
186_K	216_N	0.658	0.96
24_E	67_K	0.657	0.96
59_I	89_L	0.655	0.96
211_L	215_L	0.654	0.96
190_K	215_L	0.650	0.96
55_L	89_L	0.649	0.96
246_G	249_V	0.647	0.96
57_H	107_I	0.645	0.95
249_V	262_I	0.642	0.95
168_L	171_E	0.640	0.95
134_L	141_L	0.640	0.95
149_R	177_G	0.635	0.95
41_H	170_A	0.626	0.95
180_R	183_L	0.625	0.95
165_I	192_E	0.624	0.95
203_L	207_Q	0.621	0.94
105_R	134_L	0.621	0.94
121_L	159_L	0.620	0.94
248_T	265_F	0.619	0.94
21_E	97_R	0.619	0.94
231_D	234_L	0.618	0.94
174_L	198_V	0.618	0.94
37_Q	118_L	0.616	0.94
185_L	212_I	0.615	0.94
47_L	116_E	0.614	0.94
59_I	107_I	0.611	0.94
154_N	157_R	0.609	0.94
45_E	48_A	0.606	0.94
37_Q	78_E	0.606	0.94
239_S	265_F	0.604	0.94
102_A	106_E	0.602	0.93
235_K	243_N	0.600	0.93
76_A	107_I	0.599	0.93
248_T	251_I	0.598	0.93
241_L	249_V	0.597	0.93
127_Y	155_H	0.595	0.93
238_E	251_I	0.594	0.93
61_Q	111_E	0.593	0.93
32_R	35_P	0.590	0.93
123_E	127_Y	0.589	0.93
189_N	193_P	0.588	0.93
250_N	263_E	0.587	0.93
139_E	149_R	0.587	0.93
65_V	74_I	0.585	0.93
36_Y	101_E	0.581	0.92
127_Y	151_H	0.581	0.92
138_Q	141_L	0.581	0.92
33_P	74_I	0.581	0.92
109_L	130_L	0.580	0.92
36_Y	104_M	0.579	0.92
37_Q	42_F	0.578	0.92
103_L	106_E	0.577	0.92
45_E	49_E	0.574	0.92
60_L	76_A	0.573	0.92
124_A	159_L	0.571	0.92
254_Q	257_K	0.570	0.92
49_E	52_E	0.569	0.91
118_L	122_E	0.568	0.91
37_Q	108_A	0.567	0.91
248_T	264_F	0.566	0.91
177_G	205_V	0.566	0.91
157_R	180_R	0.565	0.91
198_V	211_L	0.565	0.91
28_I	90_D	0.565	0.91
76_A	112_N	0.564	0.91
158_L	180_R	0.562	0.91
47_L	54_V	0.561	0.91
142_A	149_R	0.558	0.91
33_P	82_R	0.557	0.91
30_D	69_L	0.557	0.91
173_T	199_I	0.557	0.91
39_R	115_R	0.556	0.91
15_Q	18_L	0.555	0.90
50_L	83_A	0.554	0.90
127_Y	175_S	0.552	0.90
66_R	75_V	0.552	0.90
36_Y	73_D	0.551	0.90
157_R	184_G	0.550	0.90
194_L	203_L	0.549	0.90
42_F	79_R	0.547	0.90
103_L	107_I	0.546	0.90
24_E	95_I	0.546	0.90
237_R	251_I	0.546	0.90
181_T	212_I	0.545	0.90
121_L	170_A	0.544	0.90
127_Y	131_L	0.543	0.89
237_R	243_N	0.543	0.89
30_D	70_K	0.542	0.89
29_A	90_D	0.542	0.89
239_S	242_Q	0.537	0.89
237_R	240_Y	0.536	0.89
194_L	197_K	0.536	0.89
240_Y	244_Y	0.536	0.89
219_V	223_T	0.535	0.89
17_D	20_E	0.535	0.89
238_E	246_G	0.534	0.89
228_P	232_A	0.532	0.89
154_N	178_H	0.532	0.89
236_E	242_Q	0.530	0.88
205_V	208_L	0.530	0.88
74_I	78_E	0.529	0.88
61_Q	76_A	0.529	0.88
77_G	80_R	0.528	0.88
193_P	197_K	0.528	0.88
104_M	110_L	0.528	0.88
245_F	251_I	0.527	0.88
79_R	116_E	0.527	0.88
202_Q	207_Q	0.526	0.88
162_P	188_K	0.525	0.88
218_N	228_P	0.523	0.88
137_T	142_A	0.523	0.88
158_L	161_L	0.522	0.88
178_H	208_L	0.521	0.87
180_R	209_E	0.520	0.87
180_R	184_G	0.519	0.87
50_L	54_V	0.519	0.87
161_L	179_G	0.518	0.87
177_G	209_E	0.518	0.87
64_I	107_I	0.518	0.87
128_D	166_Q	0.517	0.87
214_Q	221_R	0.516	0.87
25_E	94_A	0.516	0.87
234_L	251_I	0.515	0.87
242_Q	248_T	0.515	0.87
153_A	157_R	0.515	0.87
119_S	122_E	0.514	0.87
20_E	23_V	0.514	0.87
141_L	151_H	0.513	0.87
188_K	192_E	0.512	0.87
243_N	248_T	0.511	0.86
14_N	265_F	0.511	0.86
162_P	190_K	0.509	0.86
229_V	232_A	0.508	0.86
139_E	204_N	0.508	0.86
22_T	25_E	0.507	0.86
121_L	125_Q	0.506	0.86
109_L	118_L	0.506	0.86
46_A	79_R	0.504	0.86
76_A	115_R	0.504	0.86
31_L	81_F	0.504	0.86
145_L	151_H	0.503	0.86
46_A	122_E	0.501	0.85
189_N	192_E	0.500	0.85
236_E	245_F	0.500	0.85

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4umkA	2	0.6844	100	0.237	Contact Map
1vz0A	3	0.6809	100	0.257	Contact Map
1r71A	2	0.3936	99.9	0.603	Contact Map
1vk1A	1	0.6418	99.9	0.64	Contact Map
1xw3A	1	0.3617	99.8	0.647	Contact Map
1yzsA	1	0.3723	99.8	0.647	Contact Map
3mkyB	2	0.3865	99.8	0.658	Contact Map
1zx4A	2	0.5745	98.7	0.816	Contact Map
2hwjA	5	0.6348	97.2	0.873	Contact Map
3vwbA	1	0.4007	92.9	0.906	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0086 seconds.