COMGD - BACSU - GREMLIN Contacts

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COMGD - ComG operon protein 4

UniProt:	P25956	Sequences: MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLVIGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	143 (133)
Sequences:	237 (213)
Seq/√Len:	18.4

BACSU - COMGD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
116_G	133_L	4.217	1.00
53_D	88_R	3.553	1.00
57_T	68_T	3.242	0.99
113_P	131_V	3.239	0.99
54_I	70_I	2.918	0.99
131_V	138_V	2.674	0.98
55_M	59_Q	2.650	0.98
49_Q	88_R	2.570	0.97
130_T	139_N	2.387	0.95
10_G	13_L	2.325	0.95
132_Y	139_N	2.268	0.94
49_Q	53_D	2.187	0.93
11_F	14_L	2.133	0.92
24_S	28_V	2.116	0.91
11_F	17_L	2.045	0.90
53_D	79_L	2.032	0.90
79_L	88_R	2.028	0.90
12_T	15_E	1.885	0.86
50_L	129_I	1.852	0.85
61_A	94_L	1.726	0.80
57_T	70_I	1.681	0.78
61_A	136_G	1.658	0.77
42_A	81_I	1.612	0.75
90_Y	96_I	1.557	0.73
30_V	50_L	1.538	0.72
116_G	132_Y	1.527	0.71
15_E	19_V	1.502	0.70
61_A	132_Y	1.471	0.68
118_K	137_R	1.442	0.67
100_T	117_G	1.423	0.66
11_F	15_E	1.398	0.64
40_N	71_L	1.379	0.63
59_Q	102_K	1.362	0.62
50_L	140_V	1.345	0.61
10_G	15_E	1.332	0.60
21_S	24_S	1.329	0.60
124_H	127_Y	1.292	0.58
22_L	98_L	1.289	0.58
25_I	126_V	1.286	0.57
46_A	134_G	1.277	0.57
107_F	113_P	1.255	0.56
32_T	43_V	1.217	0.53
26_L	121_V	1.216	0.53
120_R	133_L	1.216	0.53
85_V	98_L	1.197	0.52
21_S	54_I	1.186	0.51
44_R	62_I	1.177	0.51
59_Q	116_G	1.175	0.51
88_R	100_T	1.172	0.50
133_L	136_G	1.117	0.47
56_L	60_T	1.101	0.46
58_Q	134_G	1.092	0.45
118_K	128_D	1.078	0.45
127_Y	139_N	1.078	0.45
10_G	53_D	1.072	0.44
22_L	82_G	1.032	0.42
77_Y	133_L	1.023	0.41
53_D	134_G	1.007	0.40
55_M	138_V	1.005	0.40
46_A	121_V	1.003	0.40
12_T	17_L	1.002	0.40
67_R	106_E	1.002	0.40
62_I	114_N	0.987	0.39
57_T	107_F	0.982	0.39
15_E	111_G	0.979	0.39
132_Y	136_G	0.979	0.39
16_S	112_H	0.976	0.38
79_L	86_I	0.970	0.38
79_L	117_G	0.963	0.38
112_H	132_Y	0.955	0.37
128_D	139_N	0.953	0.37
102_K	119_I	0.917	0.35
68_T	79_L	0.916	0.35
51_K	134_G	0.900	0.34
17_L	71_L	0.893	0.34
96_I	110_K	0.890	0.34
113_P	127_Y	0.880	0.33
121_V	140_V	0.874	0.33
46_A	94_L	0.859	0.32
127_Y	135_S	0.856	0.32
23_A	105_L	0.853	0.31
105_L	116_G	0.853	0.31
32_T	91_A	0.849	0.31
57_T	72_F	0.849	0.31
100_T	121_V	0.845	0.31
50_L	113_P	0.840	0.31
74_K	110_K	0.836	0.31
102_K	133_L	0.830	0.30
65_Q	110_K	0.826	0.30
23_A	108_N	0.817	0.30
51_K	105_L	0.813	0.29
132_Y	138_V	0.813	0.29
122_K	129_I	0.806	0.29
38_Y	113_P	0.802	0.29
19_V	69_K	0.802	0.29
14_L	18_L	0.800	0.29
37_A	131_V	0.798	0.29
14_L	119_I	0.798	0.29
105_L	138_V	0.783	0.28
10_G	58_Q	0.783	0.28
47_A	140_V	0.781	0.28
46_A	59_Q	0.779	0.28
93_G	140_V	0.773	0.27
43_V	135_S	0.772	0.27
78_Q	87_E	0.772	0.27
46_A	91_A	0.771	0.27
68_T	132_Y	0.770	0.27
56_L	135_S	0.770	0.27
113_P	138_V	0.770	0.27
11_F	130_T	0.769	0.27
59_Q	100_T	0.767	0.27
118_K	129_I	0.767	0.27
20_L	80_V	0.765	0.27
21_S	86_I	0.763	0.27
21_S	34_L	0.761	0.27
45_Q	119_I	0.754	0.26
16_S	19_V	0.748	0.26
40_N	128_D	0.741	0.26
40_N	89_P	0.740	0.26
54_I	60_T	0.738	0.26
66_Q	80_V	0.736	0.26
90_Y	94_L	0.732	0.25
16_S	47_A	0.724	0.25
59_Q	133_L	0.723	0.25
44_R	75_K	0.716	0.25
45_Q	97_E	0.715	0.25
75_K	90_Y	0.710	0.24
63_S	73_H	0.709	0.24
18_L	65_Q	0.700	0.24
94_L	98_L	0.695	0.24
13_L	45_Q	0.692	0.24
70_I	123_G	0.691	0.23
111_G	136_G	0.690	0.23
15_E	20_L	0.689	0.23
100_T	116_G	0.689	0.23
23_A	136_G	0.687	0.23
48_S	116_G	0.686	0.23
61_A	68_T	0.686	0.23
30_V	113_P	0.685	0.23
28_V	32_T	0.681	0.23
60_T	64_R	0.680	0.23
38_Y	96_I	0.673	0.23
59_Q	132_Y	0.665	0.22
33_T	44_R	0.662	0.22
126_V	129_I	0.661	0.22
18_L	43_V	0.657	0.22
89_P	107_F	0.649	0.22
84_T	99_L	0.649	0.22
65_Q	112_H	0.643	0.21
107_F	132_Y	0.641	0.21
58_Q	132_Y	0.640	0.21
29_A	34_L	0.635	0.21
50_L	127_Y	0.625	0.21
7_E	14_L	0.610	0.20
46_A	58_Q	0.608	0.20
9_K	64_R	0.603	0.20
74_K	91_A	0.603	0.20
21_S	62_I	0.603	0.20
113_P	116_G	0.597	0.20
43_V	127_Y	0.596	0.20
53_D	116_G	0.594	0.19
84_T	107_F	0.593	0.19
110_K	115_A	0.587	0.19
16_S	35_P	0.585	0.19
60_T	129_I	0.576	0.19
7_E	11_F	0.573	0.19
91_A	94_L	0.572	0.19
16_S	102_K	0.570	0.19
94_L	107_F	0.565	0.18
29_A	124_H	0.564	0.18
37_A	105_L	0.559	0.18
34_L	125_A	0.558	0.18
81_I	117_G	0.556	0.18
107_F	111_G	0.554	0.18
52_N	116_G	0.552	0.18
119_I	133_L	0.551	0.18
16_S	33_T	0.548	0.18
70_I	96_I	0.546	0.18
45_Q	90_Y	0.546	0.18
13_L	22_L	0.544	0.18
77_Y	139_N	0.540	0.17
49_Q	126_V	0.539	0.17
47_A	112_H	0.537	0.17
33_T	51_K	0.537	0.17
17_L	88_R	0.536	0.17
62_I	116_G	0.536	0.17
82_G	133_L	0.524	0.17
74_K	107_F	0.524	0.17
33_T	126_V	0.519	0.17
61_A	114_N	0.519	0.17
91_A	128_D	0.519	0.17
14_L	28_V	0.517	0.17
31_F	44_R	0.517	0.17
52_N	55_M	0.514	0.16
28_V	104_R	0.508	0.16
42_A	70_I	0.508	0.16
64_R	107_F	0.508	0.16
16_S	130_T	0.505	0.16
108_N	128_D	0.503	0.16
70_I	91_A	0.500	0.16

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1oqwA	1	0.8601	97.8	0.805	Contact Map
4dq9A	2	0.7273	97.6	0.815	Contact Map
2m7gA	1	0.4266	97.3	0.825	Contact Map
4ipuA	1	0.7692	97.2	0.826	Contact Map
2hi2A	1	0.8741	96.8	0.837	Contact Map
3sokA	1	0.8392	96.7	0.84	Contact Map
2knqA	1	0.7762	91.3	0.878	Contact Map
3aqyA	1	0.4406	8.3	0.943	Contact Map
3ie4A	1	0.4476	8.2	0.943	Contact Map
3tzgA	1	0.4615	7	0.945	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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