SYY2 - BACSU - GREMLIN Contacts

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SYY2 - Tyrosine--tRNA ligase 2

UniProt:	P25151	Sequences: MMRTFEQLTASQQKEVERQLQLYMTGAHEVIPPEELKAKLVKSISTGTPLKIKLGLDPSAPDVHLGHTVVLNKLRQFQENGHIVQLLIGDFTGKIGDPTGKSAARKQLTDEEVQHNAKTYFEQFGKVLDPEKVELHYNSKWLKTLNLEDVIELAGKITVARLMERDDFEERIAMQKPISLHEFFYPLMQGYDSVVLESDIELGGTDQHFNVLMGRHFQERYNKEKQVVILMPLLEGLDGVEKMSKSKHNYIGINEHPNDMYGKTMSLPDSLMKKYIHLATDLELEEKKQLVKDLETGAVHPRDAKMLLARTIVRMYHGEKAAEAAEHSFKTVFQENSLPEDIPAVNWKGEKTIAMIDLLVKLKLLSSKSEARRMIQNGGVRIDGEKVTDVHAKAEIRENMIIQVGKRKFLKLQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	413 (390)
Sequences:	4225 (2352)
Seq/√Len:	119.1

ECOLI - SYY
BACSU - SYY2 SYY1
SULSO - SYW

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
319_E	323_E	4.133	1.00
195_V	199_D	3.903	1.00
314_R	319_E	3.423	1.00
357_D	368_K	3.400	1.00
310_R	326_E	3.265	1.00
146_N	149_D	3.174	1.00
83_I	134_E	3.142	1.00
381_R	403_Q	3.127	1.00
101_K	247_K	3.126	1.00
136_H	140_K	3.053	1.00
211_V	228_V	2.882	1.00
218_Q	226_Q	2.858	1.00
273_K	291_V	2.741	1.00
118_K	121_F	2.679	1.00
51_K	83_I	2.676	1.00
75_R	79_E	2.548	1.00
235_E	274_K	2.498	1.00
58_P	93_G	2.484	1.00
194_V	221_Y	2.445	1.00
318_G	321_A	2.431	1.00
321_A	324_A	2.430	1.00
197_E	224_E	2.285	1.00
354_A	357_D	2.278	1.00
43_S	47_G	2.229	1.00
23_Y	34_E	2.142	1.00
121_F	125_G	2.065	1.00
289_Q	293_D	2.061	1.00
381_R	386_K	2.059	1.00
169_E	173_A	2.045	1.00
378_G	386_K	2.039	1.00
109_T	112_E	2.018	1.00
273_K	277_H	2.015	1.00
314_R	322_A	2.013	1.00
365_L	371_A	2.005	1.00
194_V	198_S	2.002	1.00
114_Q	118_K	1.979	1.00
376_Q	390_V	1.947	1.00
198_S	222_N	1.932	1.00
286_E	289_Q	1.929	1.00
360_V	368_K	1.917	1.00
54_L	70_V	1.901	1.00
115_H	119_T	1.894	1.00
366_S	370_E	1.890	1.00
306_M	330_K	1.869	1.00
115_H	118_K	1.866	1.00
52_I	77_F	1.864	1.00
358_L	412_L	1.864	1.00
277_H	291_V	1.851	1.00
24_M	33_P	1.833	1.00
71_L	124_F	1.829	1.00
291_V	295_E	1.808	1.00
292_K	297_G	1.792	1.00
91_F	142_L	1.782	1.00
364_L	410_L	1.775	1.00
87_L	196_L	1.765	1.00
51_K	85_Q	1.748	1.00
110_D	114_Q	1.736	1.00
310_R	322_A	1.736	1.00
33_P	36_L	1.697	1.00
52_I	74_L	1.696	1.00
359_L	380_V	1.695	1.00
293_D	298_A	1.681	1.00
94_K	110_D	1.664	1.00
370_E	374_M	1.662	1.00
307_L	311_T	1.644	1.00
374_M	379_G	1.643	1.00
288_K	291_V	1.630	1.00
238_D	241_E	1.625	1.00
236_G	241_E	1.622	1.00
326_E	330_K	1.621	1.00
117_A	137_Y	1.619	1.00
24_M	284_L	1.616	1.00
284_L	288_K	1.612	1.00
271_L	274_K	1.608	1.00
29_E	208_H	1.605	1.00
392_A	398_E	1.604	1.00
142_L	145_L	1.596	1.00
241_E	247_K	1.594	1.00
358_L	394_A	1.582	1.00
70_V	231_M	1.580	1.00
157_I	213_M	1.573	1.00
310_R	323_E	1.561	1.00
369_S	373_R	1.557	1.00
112_E	115_H	1.555	1.00
129_D	132_K	1.554	1.00
139_S	143_K	1.554	1.00
190_G	213_M	1.545	1.00
108_L	112_E	1.528	1.00
289_Q	292_K	1.528	1.00
103_A	106_K	1.509	1.00
374_M	377_N	1.503	1.00
32_P	228_V	1.501	1.00
374_M	404_V	1.500	1.00
260_M	313_V	1.499	1.00
298_A	301_P	1.496	1.00
136_H	196_L	1.484	1.00
373_R	377_N	1.481	1.00
85_Q	136_H	1.479	1.00
365_L	374_M	1.474	1.00
54_L	202_L	1.473	1.00
283_E	286_E	1.467	1.00
44_I	50_L	1.461	1.00
292_K	295_E	1.459	1.00
355_M	387_V	1.455	1.00
268_P	271_L	1.451	1.00
85_Q	134_E	1.441	1.00
260_M	312_I	1.434	1.00
403_Q	409_F	1.427	1.00
108_L	116_N	1.418	1.00
156_K	220_R	1.401	1.00
56_L	71_L	1.397	1.00
56_L	70_V	1.388	1.00
323_E	327_H	1.385	1.00
90_D	137_Y	1.381	1.00
21_Q	24_M	1.376	1.00
261_Y	326_E	1.368	1.00
354_A	368_K	1.364	1.00
44_I	48_T	1.349	1.00
321_A	325_A	1.349	1.00
352_T	393_K	1.346	1.00
360_V	365_L	1.330	1.00
302_R	306_M	1.330	1.00
216_H	219_E	1.324	1.00
44_I	47_G	1.324	1.00
282_L	307_L	1.317	1.00
303_D	306_M	1.315	1.00
90_D	139_S	1.311	1.00
288_K	292_K	1.310	1.00
56_L	63_V	1.305	1.00
370_E	373_R	1.303	1.00
286_E	307_L	1.301	1.00
273_K	294_L	1.291	1.00
197_E	222_N	1.289	1.00
42_K	46_T	1.278	1.00
320_K	324_A	1.268	0.99
355_M	392_A	1.264	0.99
118_K	122_E	1.244	0.99
158_T	177_P	1.244	0.99
43_S	46_T	1.237	0.99
380_V	404_V	1.229	0.99
251_I	264_T	1.227	0.99
74_L	77_F	1.227	0.99
293_D	303_D	1.226	0.99
282_L	311_T	1.220	0.99
322_A	329_F	1.212	0.99
77_F	200_I	1.208	0.99
86_L	124_F	1.201	0.99
389_D	392_A	1.197	0.99
256_H	259_D	1.194	0.99
147_L	150_V	1.170	0.99
356_I	368_K	1.159	0.99
61_P	115_H	1.157	0.99
357_D	361_K	1.154	0.99
378_G	388_T	1.152	0.99
327_H	331_T	1.152	0.99
65_L	264_T	1.151	0.99
197_E	223_K	1.140	0.99
342_I	401_I	1.140	0.99
194_V	218_Q	1.136	0.99
147_L	188_M	1.135	0.99
382_I	400_M	1.135	0.99
395_E	398_E	1.125	0.99
306_M	326_E	1.123	0.99
236_G	249_N	1.122	0.99
260_M	264_T	1.121	0.99
353_I	358_L	1.102	0.99
161_R	164_E	1.100	0.99
327_H	330_K	1.099	0.99
282_L	286_E	1.096	0.99
362_L	410_L	1.088	0.98
323_E	326_E	1.086	0.98
165_R	212_L	1.082	0.98
142_L	188_M	1.081	0.98
285_E	288_K	1.077	0.98
122_E	254_N	1.076	0.98
311_T	314_R	1.073	0.98
166_D	170_E	1.073	0.98
353_I	361_K	1.069	0.98
355_M	375_I	1.065	0.98
142_L	191_Y	1.063	0.98
310_R	314_R	1.061	0.98
262_G	266_S	1.058	0.98
195_V	198_S	1.058	0.98
394_A	400_M	1.053	0.98
273_K	288_K	1.046	0.98
194_V	222_N	1.046	0.98
356_I	375_I	1.045	0.98
322_A	326_E	1.038	0.98
287_K	291_V	1.033	0.98
277_H	284_L	1.031	0.98
383_D	400_M	1.025	0.98
72_N	315_M	1.023	0.98
45_S	50_L	1.021	0.98
73_K	231_M	1.015	0.98
42_K	45_S	1.013	0.98
373_R	379_G	1.011	0.97
137_Y	140_K	1.007	0.97
257_P	317_H	1.001	0.97
71_L	127_V	1.001	0.97
33_P	37_K	0.999	0.97
20_L	42_K	0.995	0.97
320_K	323_E	0.987	0.97
404_V	408_K	0.986	0.97
306_M	310_R	0.984	0.97
345_V	410_L	0.983	0.97
85_Q	196_L	0.983	0.97
243_M	263_K	0.980	0.97
67_H	70_V	0.975	0.97
276_I	308_L	0.968	0.97
129_D	133_V	0.964	0.97
44_I	49_P	0.964	0.97
389_D	394_A	0.960	0.97
194_V	217_F	0.957	0.96
51_K	134_E	0.950	0.96
151_I	188_M	0.949	0.96
162_L	183_F	0.944	0.96
149_D	153_L	0.942	0.96
355_M	380_V	0.938	0.96
29_E	205_T	0.937	0.96
27_A	229_I	0.935	0.96
83_I	132_K	0.935	0.96
75_R	281_D	0.935	0.96
200_I	229_I	0.935	0.96
260_M	316_Y	0.930	0.96
331_T	335_E	0.929	0.96
125_G	133_V	0.921	0.96
150_V	187_L	0.920	0.96
147_L	184_F	0.918	0.96
87_L	136_H	0.918	0.96
387_V	392_A	0.915	0.95
258_N	328_S	0.914	0.95
255_E	321_A	0.912	0.95
72_N	281_D	0.912	0.95
366_S	408_K	0.910	0.95
23_Y	229_I	0.905	0.95
17_E	37_K	0.905	0.95
251_I	263_K	0.901	0.95
359_L	402_I	0.900	0.95
276_I	290_L	0.896	0.95
76_Q	80_N	0.895	0.95
54_L	67_H	0.894	0.95
365_L	370_E	0.891	0.95
170_E	174_M	0.888	0.95
24_M	288_K	0.888	0.95
293_D	297_G	0.884	0.95
118_K	125_G	0.882	0.94
356_I	390_V	0.880	0.94
198_S	221_Y	0.880	0.94
354_A	391_H	0.878	0.94
19_Q	23_Y	0.878	0.94
365_L	380_V	0.874	0.94
78_Q	133_V	0.874	0.94
277_H	287_K	0.870	0.94
324_A	327_H	0.870	0.94
303_D	307_L	0.867	0.94
99_T	178_I	0.867	0.94
265_M	302_R	0.861	0.94
328_S	331_T	0.860	0.94
114_Q	117_A	0.860	0.94
61_P	67_H	0.858	0.94
145_L	191_Y	0.857	0.94
382_I	394_A	0.855	0.94
50_L	82_H	0.855	0.94
211_V	230_L	0.854	0.93
280_T	311_T	0.851	0.93
110_D	143_K	0.851	0.93
383_D	398_E	0.849	0.93
36_L	227_V	0.848	0.93
301_P	305_K	0.845	0.93
310_R	319_E	0.843	0.93
74_L	86_L	0.839	0.93
299_V	302_R	0.839	0.93
71_L	128_L	0.836	0.93
307_L	310_R	0.835	0.93
262_G	333_F	0.834	0.93
122_E	125_G	0.834	0.93
158_T	179_S	0.832	0.93
52_I	200_I	0.832	0.93
321_A	329_F	0.828	0.92
266_S	407_R	0.826	0.92
121_F	135_L	0.824	0.92
328_S	332_V	0.822	0.92
236_G	248_H	0.817	0.92
101_K	246_S	0.817	0.92
22_L	76_Q	0.815	0.92
290_L	307_L	0.815	0.92
30_V	230_L	0.813	0.92
24_M	30_V	0.813	0.92
290_L	294_L	0.806	0.91
261_Y	306_M	0.798	0.91
280_T	312_I	0.795	0.91
276_I	307_L	0.794	0.91
382_I	402_I	0.793	0.91
21_Q	76_Q	0.792	0.91
360_V	371_A	0.791	0.91
330_K	334_Q	0.790	0.91
76_Q	79_E	0.789	0.90
27_A	76_Q	0.787	0.90
259_D	262_G	0.787	0.90
151_I	184_F	0.786	0.90
148_E	152_E	0.785	0.90
73_K	202_L	0.784	0.90
377_N	404_V	0.783	0.90
49_P	82_H	0.781	0.90
69_V	234_L	0.777	0.90
272_M	300_H	0.777	0.90
60_A	67_H	0.776	0.90
194_V	226_Q	0.775	0.90
61_P	119_T	0.774	0.90
262_G	329_F	0.772	0.90
233_L	241_E	0.770	0.89
356_I	372_R	0.769	0.89
124_F	135_L	0.766	0.89
161_R	165_R	0.765	0.89
27_A	278_L	0.765	0.89
17_E	20_L	0.764	0.89
334_Q	337_S	0.763	0.89
401_I	411_K	0.763	0.89
252_G	255_E	0.762	0.89
291_V	294_L	0.761	0.89
277_H	288_K	0.757	0.89
363_K	366_S	0.755	0.88
50_L	200_I	0.755	0.88
384_G	403_Q	0.753	0.88
336_N	339_P	0.753	0.88
378_G	381_R	0.752	0.88
99_T	103_A	0.750	0.88
31_I	34_E	0.749	0.88
261_Y	265_M	0.748	0.88
293_D	307_L	0.748	0.88
271_L	275_Y	0.747	0.88
237_L	270_S	0.745	0.88
56_L	86_L	0.745	0.88
42_K	224_E	0.745	0.88
264_T	279_A	0.744	0.88
35_E	43_S	0.743	0.88
28_H	31_I	0.742	0.88
58_P	117_A	0.742	0.88
154_A	191_Y	0.741	0.88
396_I	399_N	0.741	0.88
67_H	246_S	0.739	0.87
163_M	172_I	0.737	0.87
354_A	375_I	0.735	0.87
261_Y	310_R	0.733	0.87
375_I	390_V	0.732	0.87
197_E	218_Q	0.730	0.87
142_L	147_L	0.727	0.87
17_E	46_T	0.727	0.87
106_K	112_E	0.724	0.86
234_L	279_A	0.723	0.86
326_E	329_F	0.723	0.86
349_G	396_I	0.721	0.86
107_Q	181_H	0.718	0.86
157_I	187_L	0.714	0.86
372_R	390_V	0.714	0.86
302_R	305_K	0.712	0.85
352_T	395_E	0.705	0.85
281_D	311_T	0.701	0.84
369_S	372_R	0.700	0.84
69_V	278_L	0.699	0.84
100_G	167_D	0.699	0.84
149_D	152_E	0.698	0.84
168_F	186_P	0.698	0.84
56_L	60_A	0.697	0.84
54_L	63_V	0.693	0.84
260_M	317_H	0.692	0.84
368_K	372_R	0.692	0.84
355_M	359_L	0.690	0.84
241_E	246_S	0.688	0.83
292_K	298_A	0.688	0.83
27_A	30_V	0.687	0.83
49_P	83_I	0.686	0.83
374_M	380_V	0.686	0.83
351_K	396_I	0.685	0.83
56_L	67_H	0.682	0.83
306_M	334_Q	0.682	0.83
314_R	320_K	0.680	0.83
67_H	71_L	0.680	0.83
385_E	392_A	0.679	0.83
161_R	216_H	0.675	0.82
99_T	167_D	0.674	0.82
46_T	49_P	0.672	0.82
266_S	333_F	0.671	0.82
65_L	312_I	0.671	0.82
358_L	400_M	0.667	0.81
127_V	260_M	0.667	0.81
357_D	360_V	0.665	0.81
25_T	284_L	0.663	0.81
375_I	380_V	0.663	0.81
213_M	216_H	0.659	0.81
261_Y	329_F	0.659	0.81
267_L	275_Y	0.659	0.81
191_Y	195_V	0.659	0.81
75_R	78_Q	0.658	0.81
101_K	170_E	0.656	0.80
122_E	126_K	0.654	0.80
94_K	113_V	0.654	0.80
27_A	72_N	0.653	0.80
102_S	106_K	0.652	0.80
290_L	293_D	0.652	0.80
236_G	263_K	0.651	0.80
34_E	37_K	0.651	0.80
70_V	202_L	0.648	0.80
285_E	289_Q	0.648	0.80
365_L	402_I	0.646	0.79
294_L	298_A	0.646	0.79
238_D	268_P	0.645	0.79
166_D	169_E	0.644	0.79
86_L	128_L	0.643	0.79
293_D	300_H	0.643	0.79
68_T	315_M	0.641	0.79
246_S	249_N	0.638	0.78
354_A	393_K	0.634	0.78
300_H	303_D	0.633	0.78
52_I	202_L	0.631	0.78
208_H	230_L	0.629	0.78
159_V	178_I	0.629	0.78
107_Q	152_E	0.629	0.78
335_E	338_L	0.627	0.77
272_M	304_A	0.627	0.77
345_V	362_L	0.627	0.77
125_G	135_L	0.627	0.77
123_Q	254_N	0.626	0.77
145_L	154_A	0.625	0.77
212_L	215_R	0.623	0.77
158_T	161_R	0.622	0.77
159_V	183_F	0.622	0.77
366_S	369_S	0.622	0.77
267_L	271_L	0.621	0.77
126_K	255_E	0.620	0.77
34_E	42_K	0.619	0.76
280_T	307_L	0.619	0.76
20_L	24_M	0.619	0.76
152_E	156_K	0.617	0.76
364_L	404_V	0.616	0.76
275_Y	279_A	0.613	0.76
388_T	392_A	0.612	0.76
67_H	119_T	0.611	0.75
58_P	64_H	0.611	0.75
299_V	303_D	0.609	0.75
113_V	116_N	0.609	0.75
341_D	345_V	0.607	0.75
369_S	376_Q	0.606	0.75
272_M	291_V	0.605	0.75
237_L	267_L	0.605	0.75
167_D	186_P	0.605	0.75
294_L	305_K	0.604	0.75
247_K	250_Y	0.604	0.75
103_A	247_K	0.602	0.74
45_S	48_T	0.602	0.74
150_V	154_A	0.601	0.74
109_T	113_V	0.601	0.74
262_G	407_R	0.601	0.74
359_L	371_A	0.600	0.74
65_L	263_K	0.599	0.74
94_K	143_K	0.599	0.74
84_V	132_K	0.598	0.74
108_L	113_V	0.598	0.74
60_A	248_H	0.597	0.74
93_G	113_V	0.597	0.74
70_V	99_T	0.596	0.74
67_H	275_Y	0.596	0.74
49_P	132_K	0.595	0.74
18_R	21_Q	0.595	0.74
325_A	329_F	0.595	0.74
65_L	260_M	0.595	0.74
191_Y	221_Y	0.594	0.73
329_F	407_R	0.593	0.73
157_I	190_G	0.592	0.73
75_R	124_F	0.592	0.73
342_I	409_F	0.587	0.73
56_L	157_I	0.585	0.72
264_T	313_V	0.582	0.72
331_T	334_Q	0.582	0.72
180_L	184_F	0.579	0.72
389_D	393_K	0.577	0.71
65_L	278_L	0.577	0.71
72_N	76_Q	0.577	0.71
139_S	142_L	0.577	0.71
385_E	388_T	0.576	0.71
215_R	226_Q	0.576	0.71
290_L	304_A	0.575	0.71
100_G	247_K	0.574	0.71
374_M	408_K	0.574	0.71
164_E	251_I	0.573	0.71
236_G	275_Y	0.573	0.71
233_L	247_K	0.572	0.71
65_L	279_A	0.568	0.70
65_L	127_V	0.566	0.70
317_H	321_A	0.566	0.70
237_L	268_P	0.566	0.70
276_I	287_K	0.565	0.70
20_L	23_Y	0.565	0.70
76_Q	281_D	0.565	0.70
67_H	75_R	0.564	0.70
209_F	212_L	0.562	0.69
341_D	344_A	0.561	0.69
126_K	254_N	0.559	0.69
162_L	168_F	0.558	0.69
393_K	408_K	0.558	0.69
158_T	174_M	0.557	0.69
68_T	279_A	0.557	0.69
156_K	181_H	0.556	0.68
312_I	316_Y	0.556	0.68
114_Q	137_Y	0.556	0.68
101_K	106_K	0.555	0.68
293_D	299_V	0.554	0.68
234_L	278_L	0.552	0.68
180_L	187_L	0.552	0.68
65_L	236_G	0.552	0.68
69_V	73_K	0.550	0.68
284_L	287_K	0.546	0.67
377_N	380_V	0.544	0.67
186_P	190_G	0.544	0.67
400_M	412_L	0.543	0.67
396_I	412_L	0.542	0.67
104_A	181_H	0.542	0.67
262_G	265_M	0.540	0.66
202_L	231_M	0.538	0.66
385_E	398_E	0.537	0.66
382_I	392_A	0.537	0.66
368_K	379_G	0.535	0.66
302_R	333_F	0.535	0.66
113_V	117_A	0.534	0.65
78_Q	129_D	0.534	0.65
43_S	49_P	0.534	0.65
360_V	363_K	0.534	0.65
397_R	400_M	0.534	0.65
31_I	37_K	0.532	0.65
219_E	225_K	0.532	0.65
30_V	229_I	0.531	0.65
162_L	180_L	0.531	0.65
216_H	220_R	0.530	0.65
276_I	304_A	0.529	0.65
352_T	396_I	0.529	0.65
358_L	402_I	0.527	0.64
234_L	263_K	0.527	0.64
246_S	260_M	0.527	0.64
94_K	108_L	0.527	0.64
233_L	254_N	0.526	0.64
67_H	120_Y	0.526	0.64
106_K	247_K	0.525	0.64
379_G	384_G	0.524	0.64
366_S	374_M	0.522	0.64
67_H	231_M	0.521	0.64
384_G	401_I	0.521	0.64
162_L	186_P	0.520	0.63
31_I	228_V	0.519	0.63
144_T	149_D	0.519	0.63
125_G	128_L	0.517	0.63
51_K	197_E	0.517	0.63
167_D	170_E	0.515	0.63
89_G	96_G	0.515	0.63
159_V	162_L	0.514	0.62
345_V	355_M	0.514	0.62
169_E	219_E	0.514	0.62
276_I	280_T	0.513	0.62
372_R	376_Q	0.512	0.62
119_T	122_E	0.512	0.62
104_A	156_K	0.512	0.62
32_P	215_R	0.511	0.62
273_K	287_K	0.511	0.62
360_V	369_S	0.511	0.62
390_V	394_A	0.510	0.62
243_M	305_K	0.510	0.62
89_G	92_T	0.509	0.62
371_A	375_I	0.508	0.62
54_L	86_L	0.508	0.62
64_H	93_G	0.508	0.62
158_T	186_P	0.507	0.61
376_Q	391_H	0.506	0.61
344_A	348_K	0.506	0.61
359_L	364_L	0.506	0.61
280_T	315_M	0.504	0.61
103_A	176_K	0.503	0.61
23_Y	28_H	0.503	0.61
354_A	394_A	0.503	0.61
392_A	396_I	0.502	0.61
393_K	397_R	0.502	0.61
394_A	397_R	0.502	0.61
71_L	86_L	0.502	0.61
84_V	133_V	0.501	0.61
190_G	217_F	0.501	0.61
121_F	130_P	0.500	0.60
357_D	391_H	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2janA	2	0.9395	100	0.196	Contact Map
2ts1A	2	0.7385	100	0.2	Contact Map
1jilA	2	0.753	100	0.201	Contact Map
4oudA	2	0.9177	100	0.202	Contact Map
1h3fA	2	0.9031	100	0.218	Contact Map
1y42X	2	0.77	100	0.335	Contact Map
2pidA	2	0.7264	100	0.374	Contact Map
2yxnA	2	0.7482	100	0.386	Contact Map
3p0jA	1	0.9298	100	0.45	Contact Map
3vgjA	2	0.7845	100	0.474	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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