GREMLIN Database
FLGC - Flagellar basal-body rod protein FlgC
UniProt: P24501 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 150 (132)
Sequences: 1948 (1320)
Seq/√Len: 114.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
92_L108_Q4.3011.00
144_K147_E3.6791.00
113_D116_K3.5671.00
90_F108_Q3.0501.00
92_L102_N2.7931.00
102_N108_Q2.7061.00
36_A44_V2.6371.00
54_Q81_S2.5191.00
47_R90_F2.3821.00
34_T100_D2.3351.00
17_Q20_R2.2811.00
28_L114_P2.2071.00
10_S134_A2.1701.00
23_V51_V2.1501.00
147_E150_K2.0981.00
95_D109_K2.0191.00
92_L104_E1.9511.00
16_A53_L1.8931.00
54_Q79_K1.8641.00
35_R100_D1.7781.00
19_V83_I1.7411.00
5_H8_N1.7401.00
21_M121_L1.7221.00
35_R43_W1.7211.00
133_T136_N1.7051.00
26_S49_K1.7041.00
6_S138_T1.6481.00
50_M120_D1.6221.00
45_P90_F1.6091.00
95_D98_D1.6051.00
94_Y106_Y1.5891.00
50_M84_T1.5841.00
118_M121_L1.4481.00
10_S13_A1.4441.00
92_L106_Y1.4081.00
47_R85_E1.4061.00
24_V121_L1.3971.00
10_S135_M1.3701.00
17_Q127_S1.3521.00
49_K85_E1.2700.99
126_R129_E1.2130.99
36_A43_W1.1920.99
44_V47_R1.1680.99
17_Q123_S1.1640.99
56_K79_K1.1610.99
93_V109_K1.1390.99
98_D103_A1.1130.98
136_N149_G1.1060.98
52_S84_T1.1050.98
48_R86_D1.1050.98
46_Y49_K1.0890.98
7_L135_M1.0770.98
37_K43_W1.0650.98
123_S127_S1.0610.98
88_S116_K1.0320.98
90_F112_V1.0290.97
140_G143_M1.0260.97
14_L21_M1.0060.97
125_T137_A1.0050.97
13_A28_L1.0030.97
44_V108_Q0.9940.97
28_L134_A0.9870.97
116_K120_D0.9840.97
28_L56_K0.9790.97
7_L142_L0.9770.97
12_S77_G0.9680.96
133_T139_K0.9600.96
3_A138_T0.9590.96
3_A6_S0.9520.96
14_L135_M0.9430.96
96_P101_A0.9290.95
18_R22_D0.9170.95
4_F142_L0.9140.95
129_E133_T0.9060.95
20_R123_S0.9030.95
137_A141_M0.8920.94
96_P99_P0.8880.94
91_N109_K0.8830.94
135_M138_T0.8780.94
129_E147_E0.8730.94
117_E141_M0.8710.94
114_P133_T0.8700.93
19_V51_V0.8630.93
136_N139_K0.8600.93
55_S76_N0.8550.93
70_G73_N0.8510.93
10_S14_L0.8360.92
142_L145_A0.8330.92
7_L148_I0.8300.92
135_M148_I0.8270.92
45_P110_P0.8070.91
132_V136_N0.8050.91
17_Q32_D0.7980.90
23_V26_S0.7930.90
23_V83_I0.7910.90
48_R117_E0.7880.90
136_N140_G0.7840.89
138_T142_L0.7820.89
6_S134_A0.7760.89
36_A42_E0.7760.89
36_A107_V0.7670.88
93_V119_V0.7670.88
115_L122_V0.7660.88
13_A131_N0.7650.88
11_A129_E0.7630.88
37_K42_E0.7630.88
14_L119_V0.7590.88
33_T55_S0.7550.88
19_V22_D0.7530.87
98_D101_A0.7420.87
94_Y99_P0.7170.85
53_L57_G0.7100.84
78_V101_A0.7100.84
10_S138_T0.7080.84
81_S84_T0.7040.84
128_Y145_A0.6990.83
128_Y142_L0.6970.83
3_A142_L0.6920.83
53_L78_V0.6910.82
118_M122_V0.6850.82
122_V138_T0.6850.82
22_D26_S0.6840.82
129_E140_G0.6820.82
94_Y101_A0.6780.81
45_P108_Q0.6740.81
12_S16_A0.6710.81
36_A45_P0.6690.80
143_M147_E0.6690.80
18_R35_R0.6680.80
6_S9_V0.6660.80
37_K44_V0.6650.80
143_M150_K0.6630.80
86_D111_N0.6560.79
26_S36_A0.6510.79
21_M114_P0.6410.78
17_Q124_S0.6390.77
89_D114_P0.6350.77
20_R120_D0.6280.76
9_V76_N0.6270.76
13_A17_Q0.6210.75
54_Q82_K0.6150.75
46_Y120_D0.6130.74
95_D107_V0.6050.73
136_N144_K0.6050.73
47_R87_D0.6040.73
13_A26_S0.5990.73
124_S130_A0.5920.72
145_A148_I0.5920.72
122_V126_R0.5900.72
99_P102_N0.5870.71
34_T109_K0.5850.71
76_N79_K0.5840.71
32_D110_P0.5800.70
30_N33_T0.5790.70
21_M141_M0.5680.69
101_A105_G0.5670.69
79_K103_A0.5670.69
13_A137_A0.5670.69
18_R100_D0.5660.68
140_G144_K0.5660.68
25_S138_T0.5640.68
52_S81_S0.5610.68
50_M116_K0.5570.67
133_T143_M0.5550.67
8_N28_L0.5540.67
54_Q78_V0.5510.66
35_R139_K0.5500.66
115_L119_V0.5450.66
57_G74_A0.5440.65
23_V75_G0.5440.65
7_L129_E0.5440.65
129_E144_K0.5370.64
145_A149_G0.5370.64
8_N129_E0.5370.64
71_S74_A0.5350.64
70_G76_N0.5350.64
102_N106_Y0.5330.64
3_A79_K0.5300.63
9_V137_A0.5260.63
80_V83_I0.5260.63
56_K71_S0.5250.63
15_T132_V0.5240.63
4_F135_M0.5200.62
125_T142_L0.5200.62
18_R129_E0.5180.62
96_P102_N0.5170.61
121_L125_T0.5170.61
14_L17_Q0.5160.61
15_T19_V0.5150.61
5_H37_K0.5120.61
5_H123_S0.5070.60
16_A78_V0.5070.60
32_D128_Y0.5050.60
44_V103_A0.5050.60
122_V125_T0.5050.60
10_S131_N0.5020.59
52_S94_Y0.5010.59
7_L138_T0.5000.59
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3a69A 3 0.7333 99.9 0.427 Contact Map
4ut1A 1 0.5733 99.4 0.654 Contact Map
1wlgA 2 0.6933 85.8 0.885 Contact Map
1oryB 2 0.2667 15.8 0.932 Contact Map
1ucuA 1 0.7133 14.8 0.933 Contact Map
2d4yA 1 0.6 4.6 0.947 Contact Map
2d4xA 1 0.34 2.6 0.953 Contact Map
7ceiB 1 0 2.4 0.954 Contact Map
2qt7A 3 0.3333 2.3 0.955 Contact Map
3k1iC 1 0.1667 2.1 0.955 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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