FLGB - BACSU - GREMLIN Contacts

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FLGB - Flagellar basal body rod protein FlgB

UniProt:	P24500	Sequences: MSLFSGTIQNLENALSRADIKQKVITNNIANIDTPNYKAKKVSFQNLLDQESSRLEAIKTDYRHVDFSDTDSNYSIVASGDTSYQQNGNNVDVDKEMTELAQNQINYQALVERMNGKFNSLKTVLTGGK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	129 (121)
Sequences:	1683 (1294)
Seq/√Len:	117.7

ECOLI - FLGB
BACSU - FLGB

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_V	42_V	2.990	1.00
29_I	93_V	2.958	1.00
60_T	64_H	2.875	1.00
47_L	50_Q	2.789	1.00
57_A	67_F	2.736	1.00
116_G	120_S	2.700	1.00
47_L	51_E	2.648	1.00
43_S	46_N	2.619	1.00
18_A	103_N	2.611	1.00
8_I	118_F	2.556	1.00
37_Y	40_K	2.504	1.00
99_E	102_Q	2.493	1.00
102_Q	106_N	2.491	1.00
13_N	16_S	2.295	1.00
20_I	23_K	2.259	1.00
39_A	90_N	2.241	1.00
59_K	66_D	2.221	1.00
17_R	42_V	2.205	1.00
27_N	37_Y	2.033	1.00
59_K	65_V	2.006	1.00
121_L	125_L	1.938	1.00
24_V	76_I	1.827	1.00
25_I	100_L	1.788	1.00
21_K	41_K	1.781	1.00
11_L	110_L	1.723	1.00
119_N	122_K	1.618	1.00
22_Q	103_N	1.554	1.00
20_I	42_V	1.521	1.00
112_E	116_G	1.413	1.00
123_T	126_T	1.399	1.00
12_E	16_S	1.308	1.00
45_Q	49_D	1.308	1.00
25_I	41_K	1.299	1.00
107_Y	111_V	1.276	0.99
39_A	79_S	1.265	0.99
95_K	99_E	1.237	0.99
92_D	95_K	1.223	0.99
117_K	120_S	1.219	0.99
27_N	111_V	1.197	0.99
93_V	97_M	1.195	0.99
97_M	101_A	1.192	0.99
57_A	64_H	1.190	0.99
61_D	64_H	1.187	0.99
108_Q	111_V	1.175	0.99
25_I	103_N	1.171	0.99
40_K	78_A	1.162	0.99
33_D	83_S	1.157	0.99
122_K	126_T	1.141	0.99
111_V	115_N	1.115	0.99
15_L	19_D	1.094	0.98
7_T	12_E	1.091	0.98
94_D	97_M	1.055	0.98
43_S	77_V	1.025	0.98
17_R	24_V	1.014	0.97
27_N	40_K	0.997	0.97
23_K	26_T	0.975	0.97
9_Q	22_Q	0.971	0.97
113_R	120_S	0.953	0.96
22_Q	94_D	0.953	0.96
15_L	111_V	0.950	0.96
8_I	117_K	0.950	0.96
14_A	109_A	0.936	0.96
16_S	19_D	0.930	0.96
95_K	98_T	0.912	0.95
21_K	99_E	0.898	0.95
42_V	77_V	0.896	0.95
112_E	115_N	0.882	0.94
52_S	55_L	0.882	0.94
114_M	117_K	0.846	0.93
53_S	56_E	0.835	0.92
11_L	113_R	0.829	0.92
10_N	48_L	0.829	0.92
59_K	64_H	0.828	0.92
110_L	114_M	0.825	0.92
98_T	101_A	0.820	0.92
11_L	117_K	0.811	0.91
24_V	37_Y	0.800	0.91
86_Q	98_T	0.799	0.91
109_A	113_R	0.794	0.90
64_H	97_M	0.783	0.90
82_T	95_K	0.777	0.90
112_E	118_F	0.776	0.89
21_K	95_K	0.773	0.89
57_A	65_V	0.769	0.89
29_I	32_I	0.768	0.89
18_A	106_N	0.768	0.89
23_K	108_Q	0.765	0.89
12_E	93_V	0.760	0.88
14_A	106_N	0.751	0.88
108_Q	115_N	0.750	0.88
22_Q	100_L	0.743	0.87
44_F	48_L	0.742	0.87
82_T	90_N	0.731	0.86
47_L	75_S	0.729	0.86
58_I	105_I	0.727	0.86
81_D	92_D	0.721	0.86
65_V	69_D	0.721	0.86
118_F	125_L	0.719	0.86
41_K	46_N	0.702	0.84
41_K	111_V	0.698	0.84
104_Q	108_Q	0.696	0.84
17_R	90_N	0.692	0.83
50_Q	53_S	0.691	0.83
84_Y	92_D	0.690	0.83
87_N	104_Q	0.680	0.82
18_A	27_N	0.673	0.82
108_Q	122_K	0.672	0.82
8_I	35_P	0.669	0.81
94_D	105_I	0.669	0.81
62_Y	70_T	0.666	0.81
26_T	113_R	0.666	0.81
97_M	100_L	0.665	0.81
17_R	21_K	0.663	0.81
53_S	63_R	0.662	0.81
113_R	117_K	0.658	0.80
20_I	74_Y	0.655	0.80
39_A	96_E	0.653	0.80
46_N	70_T	0.651	0.79
9_Q	12_E	0.649	0.79
53_S	71_D	0.649	0.79
60_T	65_V	0.646	0.79
53_S	66_D	0.645	0.79
10_N	93_V	0.645	0.79
52_S	56_E	0.643	0.79
109_A	116_G	0.642	0.78
115_N	119_N	0.641	0.78
52_S	73_N	0.636	0.78
84_Y	95_K	0.635	0.78
56_E	66_D	0.633	0.78
14_A	17_R	0.632	0.77
118_F	121_L	0.630	0.77
32_I	69_D	0.628	0.77
86_Q	126_T	0.625	0.77
41_K	79_S	0.620	0.76
46_N	49_D	0.619	0.76
41_K	77_V	0.618	0.76
82_T	92_D	0.615	0.75
29_I	102_Q	0.613	0.75
40_K	79_S	0.600	0.74
54_R	71_D	0.598	0.73
56_E	70_T	0.597	0.73
12_E	33_D	0.594	0.73
119_N	123_T	0.590	0.72
45_Q	59_K	0.589	0.72
24_V	40_K	0.587	0.72
18_A	92_D	0.584	0.72
108_Q	112_E	0.583	0.72
73_N	80_G	0.582	0.71
70_T	73_N	0.582	0.71
56_E	69_D	0.581	0.71
98_T	120_S	0.575	0.71
79_S	90_N	0.575	0.71
54_R	62_Y	0.573	0.70
13_N	105_I	0.570	0.70
13_N	45_Q	0.569	0.70
108_Q	116_G	0.566	0.69
23_K	125_L	0.565	0.69
66_D	70_T	0.565	0.69
13_N	77_V	0.560	0.69
62_Y	66_D	0.556	0.68
8_I	12_E	0.553	0.68
43_S	47_L	0.552	0.67
113_R	116_G	0.552	0.67
63_R	69_D	0.551	0.67
42_V	71_D	0.547	0.67
38_K	118_F	0.543	0.66
103_N	112_E	0.539	0.66
45_Q	106_N	0.538	0.65
46_N	50_Q	0.536	0.65
114_M	118_F	0.533	0.65
25_I	81_D	0.533	0.65
30_A	81_D	0.527	0.64
101_A	104_Q	0.525	0.64
97_M	113_R	0.525	0.64
49_D	56_E	0.524	0.63
92_D	96_E	0.524	0.63
78_A	81_D	0.523	0.63
75_S	79_S	0.518	0.63
87_N	90_N	0.512	0.62
116_G	119_N	0.508	0.61
58_I	87_N	0.503	0.60
16_S	118_F	0.500	0.60

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3a69A	3	0.4806	98.7	0.753	Contact Map
4ut1A	1	0.2171	98.2	0.785	Contact Map
4ea3A	2	0.2868	9.4	0.94	Contact Map
3tr9A	3	0.8062	4.8	0.948	Contact Map
3kx6A	4	0.8605	4.4	0.949	Contact Map
1oryB	2	0.3101	4.1	0.95	Contact Map
2d4yA	1	0.6357	4	0.95	Contact Map
2y5sA	2	0.7829	3.9	0.95	Contact Map
4d2jA	4	0.8605	3.8	0.951	Contact Map
3buxB	1	0.6589	3.7	0.951	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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