RP54 - BACSU - GREMLIN Contacts

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RP54 - RNA polymerase sigma-54 factor

UniProt:	P24219	Sequences: MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYHKTNKNRMNAQEAGLQLSNPQKTLQDALKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEEDIEEAARRLSVSAKEAEAVLAKLQSLEPAGIGARSLQECILLQLQRLPNRNEQAEMLVSAHFDAFAQKKWKTLSVETGIPLHTIQDISDDIAALHPRPGLLFARPEQDVYIEPDIFITVKNGHIAAELNTRSFPEIDLHPQYRTLLSSGSCQDTVSYLSAKYQEWRWLSRALRQRKQTITRIINELITRQKDFFLKGRSAMKPLTLREVADCLSLHESTVSRAIKGKTIQTPYGLFEMKLFFSAKAEASGDGDASNYAVKTHLENLINQEDKTKPLSDQKLVDLLYEQHGIQISRRTVAKYRDQMNIPSSAARKRYK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	436 (424)
Sequences:	2280 (1603)
Seq/√Len:	77.8

ECOLI - RP54
BACSU - RP54

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
234_I	302_I	4.402	1.00
381_H	408_H	3.985	1.00
304_E	328_V	3.478	1.00
382_L	400_L	3.305	1.00
148_A	165_R	3.264	1.00
99_T	134_E	3.122	1.00
238_V	314_L	3.100	1.00
193_S	200_L	2.968	1.00
300_R	332_L	2.965	1.00
100_E	138_V	2.944	1.00
107_L	142_L	2.924	1.00
236_I	348_I	2.827	1.00
324_T	327_E	2.822	1.00
152_A	161_L	2.784	1.00
153_R	157_E	2.727	1.00
122_E	132_A	2.681	1.00
121_I	139_L	2.651	1.00
172_Q	198_I	2.647	1.00
104_F	142_L	2.641	1.00
97_T	100_E	2.441	1.00
112_D	118_E	2.428	1.00
176_L	206_I	2.360	1.00
214_H	219_L	2.345	1.00
164_Q	174_E	2.327	1.00
100_E	137_A	2.324	1.00
104_F	138_V	2.306	1.00
111_L	151_G	2.303	1.00
243_I	314_L	2.300	1.00
304_E	331_C	2.287	1.00
214_H	220_L	2.260	1.00
139_L	153_R	2.241	1.00
193_S	203_I	2.226	1.00
302_I	348_I	2.204	1.00
40_L	283_E	2.196	1.00
334_L	339_V	2.189	1.00
48_E	258_H	2.182	1.00
230_I	347_T	2.176	1.00
142_L	151_G	2.099	1.00
86_A	221_F	2.098	1.00
173_A	206_I	2.094	1.00
312_F	355_F	2.085	1.00
91_S	108_I	2.080	1.00
103_I	138_V	2.077	1.00
175_M	179_A	2.075	1.00
139_L	143_Q	2.060	1.00
398_Q	402_D	2.052	1.00
304_E	307_T	2.049	1.00
91_S	104_F	2.049	1.00
382_L	404_L	2.044	1.00
87_L	108_I	2.019	1.00
132_A	136_E	1.990	1.00
143_Q	153_R	1.971	1.00
103_I	135_A	1.965	1.00
199_P	202_T	1.945	1.00
148_A	161_L	1.924	1.00
403_L	406_E	1.922	1.00
355_F	359_L	1.920	1.00
100_E	134_E	1.916	1.00
308_R	323_L	1.915	1.00
310_K	314_L	1.908	1.00
180_H	196_T	1.883	1.00
111_L	142_L	1.872	1.00
160_L	174_E	1.867	1.00
385_L	403_L	1.859	1.00
116_Y	158_C	1.856	1.00
385_L	400_L	1.852	1.00
81_K	89_Q	1.837	1.00
120_D	123_E	1.799	1.00
209_D	212_A	1.796	1.00
161_L	164_Q	1.789	1.00
386_I	424_M	1.768	1.00
384_N	388_Q	1.766	1.00
192_L	203_I	1.762	1.00
183_A	188_K	1.759	1.00
15_L	22_A	1.735	1.00
125_A	135_A	1.732	1.00
239_K	242_H	1.714	1.00
198_I	206_I	1.713	1.00
238_V	243_I	1.686	1.00
325_L	358_K	1.685	1.00
114_N	118_E	1.675	1.00
270_C	273_T	1.674	1.00
245_A	306_I	1.671	1.00
107_L	151_G	1.670	1.00
332_L	339_V	1.655	1.00
100_E	141_K	1.651	1.00
399_K	403_L	1.640	1.00
183_A	192_L	1.635	1.00
325_L	343_I	1.629	1.00
383_E	387_N	1.614	1.00
136_E	153_R	1.610	1.00
163_L	177_V	1.610	1.00
88_K	105_N	1.605	1.00
121_I	135_A	1.586	1.00
180_H	183_A	1.577	0.99
124_A	135_A	1.576	0.99
313_F	350_T	1.572	0.99
91_S	145_L	1.563	0.99
94_M	145_L	1.559	0.99
172_Q	206_I	1.553	0.99
103_I	130_V	1.546	0.99
405_Y	411_Q	1.544	0.99
181_F	185_A	1.539	0.99
166_L	209_D	1.534	0.99
356_E	359_L	1.519	0.99
155_L	158_C	1.493	0.99
237_T	246_E	1.485	0.99
159_I	213_L	1.485	0.99
139_L	161_L	1.471	0.99
315_K	319_A	1.468	0.99
104_F	107_L	1.460	0.99
155_L	216_R	1.457	0.99
236_I	306_I	1.457	0.99
108_I	145_L	1.434	0.99
308_R	331_C	1.430	0.99
156_Q	160_L	1.422	0.99
313_F	351_P	1.414	0.99
41_S	49_R	1.387	0.99
350_T	353_G	1.380	0.99
87_L	150_I	1.373	0.99
177_V	181_F	1.366	0.99
163_L	213_L	1.365	0.99
312_F	360_F	1.360	0.98
235_F	349_Q	1.357	0.98
116_Y	155_L	1.356	0.98
143_Q	157_E	1.356	0.98
183_A	191_T	1.353	0.98
158_C	218_G	1.341	0.98
116_Y	216_R	1.336	0.98
13_P	19_L	1.333	0.98
180_H	195_E	1.320	0.98
156_Q	181_F	1.318	0.98
160_L	178_S	1.318	0.98
143_Q	161_L	1.316	0.98
13_P	16_T	1.312	0.98
323_L	327_E	1.312	0.98
362_S	374_S	1.308	0.98
318_S	384_N	1.308	0.98
363_A	375_N	1.306	0.98
355_F	360_F	1.303	0.98
348_I	351_P	1.303	0.98
20_R	24_T	1.295	0.98
308_R	327_E	1.283	0.98
395_L	400_L	1.283	0.98
401_V	405_Y	1.276	0.98
234_I	348_I	1.274	0.98
36_Y	40_L	1.267	0.98
156_Q	178_S	1.266	0.98
160_L	164_Q	1.265	0.98
121_I	136_E	1.258	0.97
121_I	132_A	1.242	0.97
300_R	334_L	1.239	0.97
305_L	323_L	1.237	0.97
152_A	158_C	1.233	0.97
257_L	284_W	1.227	0.97
163_L	209_D	1.224	0.97
247_L	299_T	1.224	0.97
306_I	313_F	1.208	0.97
163_L	173_A	1.206	0.97
83_L	221_F	1.198	0.97
86_A	146_E	1.193	0.97
204_Q	208_D	1.190	0.96
131_S	134_E	1.186	0.96
307_T	331_C	1.182	0.96
198_I	203_I	1.170	0.96
158_C	216_R	1.153	0.96
399_K	402_D	1.152	0.96
161_L	165_R	1.147	0.96
303_N	307_T	1.142	0.96
107_L	135_A	1.136	0.95
114_N	216_R	1.135	0.95
384_N	408_H	1.117	0.95
181_F	184_F	1.112	0.95
413_S	416_T	1.104	0.95
311_D	321_K	1.097	0.94
96_L	141_K	1.096	0.94
41_S	47_I	1.096	0.94
204_Q	434_R	1.096	0.94
20_R	336_E	1.088	0.94
90_Q	147_P	1.088	0.94
238_V	241_G	1.085	0.94
379_K	423_Q	1.083	0.94
304_E	308_R	1.072	0.94
312_F	359_L	1.070	0.94
389_E	394_P	1.068	0.94
138_V	151_G	1.068	0.94
255_I	288_S	1.063	0.93
188_K	191_T	1.063	0.93
308_R	328_V	1.059	0.93
183_A	195_E	1.055	0.93
136_E	140_A	1.053	0.93
90_Q	145_L	1.051	0.93
348_I	357_M	1.051	0.93
214_H	218_G	1.049	0.93
326_R	336_E	1.048	0.93
23_I	286_W	1.041	0.93
386_I	426_I	1.040	0.93
37_I	41_S	1.036	0.93
84_Q	109_H	1.030	0.92
15_L	23_I	1.029	0.92
104_F	145_L	1.028	0.92
302_I	357_M	1.026	0.92
37_I	287_L	1.024	0.92
107_L	139_L	1.023	0.92
393_K	399_K	1.021	0.92
25_L	342_A	1.020	0.92
43_E	280_K	1.018	0.92
390_D	393_K	1.018	0.92
103_I	134_E	1.017	0.92
92_L	101_K	1.015	0.92
172_Q	196_T	1.010	0.92
243_I	313_F	1.010	0.92
173_A	176_L	0.997	0.91
180_H	192_L	0.991	0.91
82_T	85_D	0.988	0.91
201_H	204_Q	0.981	0.90
347_T	356_E	0.979	0.90
106_Y	124_A	0.978	0.90
239_K	244_A	0.977	0.90
173_A	209_D	0.976	0.90
158_C	214_H	0.970	0.90
83_L	218_G	0.962	0.90
356_E	360_F	0.958	0.89
125_A	132_A	0.955	0.89
404_L	417_V	0.953	0.89
189_W	203_I	0.947	0.89
301_I	325_L	0.944	0.89
391_K	434_R	0.943	0.89
169_R	174_E	0.936	0.88
84_Q	113_S	0.932	0.88
91_S	96_L	0.931	0.88
29_H	345_G	0.923	0.87
289_R	336_E	0.919	0.87
91_S	95_N	0.916	0.87
367_A	373_A	0.916	0.87
208_D	434_R	0.916	0.87
144_S	161_L	0.916	0.87
139_L	152_A	0.914	0.87
297_T	342_A	0.913	0.87
367_A	370_D	0.911	0.87
134_E	137_A	0.911	0.87
174_E	178_S	0.905	0.86
377_A	410_I	0.904	0.86
36_Y	287_L	0.900	0.86
104_F	151_G	0.899	0.86
378_V	404_L	0.896	0.86
300_R	303_N	0.895	0.86
257_L	262_R	0.894	0.86
257_L	288_S	0.893	0.86
125_A	130_V	0.889	0.85
311_D	319_A	0.889	0.85
91_S	101_K	0.888	0.85
402_D	405_Y	0.887	0.85
305_L	360_F	0.887	0.85
46_L	281_Y	0.886	0.85
192_L	195_E	0.885	0.85
87_L	145_L	0.885	0.85
173_A	210_I	0.878	0.85
200_L	204_Q	0.871	0.84
249_T	295_K	0.871	0.84
119_E	123_E	0.871	0.84
234_I	357_M	0.870	0.84
39_E	43_E	0.869	0.84
286_W	293_Q	0.864	0.84
390_D	394_P	0.863	0.84
203_I	207_S	0.855	0.83
107_L	124_A	0.854	0.83
130_V	135_A	0.854	0.83
45_P	276_Y	0.851	0.83
395_L	403_L	0.850	0.83
116_Y	261_Y	0.850	0.83
380_T	383_E	0.849	0.83
83_L	86_A	0.846	0.82
330_D	333_S	0.845	0.82
381_H	384_N	0.843	0.82
298_I	342_A	0.841	0.82
184_F	189_W	0.841	0.82
41_S	255_I	0.837	0.82
306_I	348_I	0.837	0.82
141_K	144_S	0.837	0.82
349_Q	354_L	0.837	0.82
40_L	287_L	0.836	0.82
144_S	165_R	0.835	0.82
186_Q	431_A	0.834	0.82
167_P	170_N	0.825	0.81
304_E	332_L	0.817	0.80
108_I	142_L	0.814	0.80
104_F	108_I	0.813	0.80
189_W	207_S	0.811	0.80
16_T	23_I	0.810	0.80
386_I	389_E	0.807	0.79
281_Y	285_R	0.807	0.79
235_F	248_N	0.805	0.79
245_A	302_I	0.805	0.79
117_L	124_A	0.804	0.79
86_A	89_Q	0.804	0.79
257_L	281_Y	0.803	0.79
144_S	164_Q	0.802	0.79
389_E	432_R	0.802	0.79
47_I	255_I	0.801	0.79
47_I	284_W	0.801	0.79
325_L	337_S	0.799	0.79
153_R	161_L	0.797	0.79
160_L	177_V	0.795	0.78
48_E	256_D	0.793	0.78
243_I	351_P	0.792	0.78
116_Y	215_P	0.791	0.78
393_K	430_A	0.789	0.78
41_S	52_T	0.789	0.78
142_L	161_L	0.788	0.78
138_V	141_K	0.785	0.78
255_I	291_L	0.782	0.77
23_I	28_Y	0.781	0.77
365_A	378_V	0.772	0.76
110_S	119_E	0.771	0.76
156_Q	182_D	0.770	0.76
383_E	424_M	0.770	0.76
248_N	253_P	0.768	0.76
296_Q	300_R	0.768	0.76
367_A	378_V	0.768	0.76
324_T	363_A	0.766	0.76
37_I	291_L	0.765	0.76
13_P	23_I	0.765	0.76
299_T	303_N	0.763	0.75
100_E	103_I	0.762	0.75
18_E	25_L	0.762	0.75
301_I	356_E	0.759	0.75
84_Q	88_K	0.756	0.75
385_L	395_L	0.754	0.75
428_S	431_A	0.752	0.74
90_Q	146_E	0.752	0.74
71_E	76_L	0.749	0.74
182_D	186_Q	0.748	0.74
103_I	128_L	0.746	0.74
192_L	196_T	0.744	0.74
16_T	20_R	0.744	0.74
72_A	75_Q	0.742	0.73
387_N	391_K	0.741	0.73
396_S	399_K	0.737	0.73
106_Y	127_R	0.734	0.73
234_I	298_I	0.734	0.73
21_Q	286_W	0.733	0.73
313_F	352_Y	0.732	0.72
38_D	42_L	0.732	0.72
28_Y	36_Y	0.732	0.72
81_K	86_A	0.731	0.72
271_Q	274_V	0.731	0.72
166_L	169_R	0.727	0.72
343_I	361_F	0.726	0.72
176_L	210_I	0.726	0.72
403_L	408_H	0.726	0.72
187_K	211_A	0.725	0.72
323_L	363_A	0.722	0.71
234_I	245_A	0.722	0.71
242_H	310_K	0.722	0.71
18_E	422_D	0.721	0.71
402_D	406_E	0.719	0.71
96_L	138_V	0.716	0.71
19_L	23_I	0.713	0.70
170_N	209_D	0.711	0.70
343_I	358_K	0.708	0.70
359_L	376_Y	0.708	0.70
202_T	205_D	0.708	0.70
37_I	349_Q	0.708	0.70
28_Y	284_W	0.707	0.70
94_M	141_K	0.706	0.70
292_R	295_K	0.706	0.70
15_L	431_A	0.704	0.69
22_A	286_W	0.702	0.69
72_A	77_S	0.702	0.69
50_K	256_D	0.702	0.69
22_A	25_L	0.701	0.69
172_Q	175_M	0.701	0.69
138_V	142_L	0.701	0.69
116_Y	153_R	0.699	0.69
13_P	20_R	0.698	0.69
317_R	359_L	0.698	0.69
73_G	77_S	0.696	0.69
19_L	28_Y	0.696	0.69
284_W	288_S	0.695	0.69
176_L	203_I	0.695	0.69
323_L	362_S	0.693	0.68
20_R	349_Q	0.692	0.68
317_R	352_Y	0.691	0.68
155_L	400_L	0.691	0.68
7_Q	281_Y	0.689	0.68
142_L	145_L	0.685	0.67
222_A	226_Q	0.683	0.67
136_E	139_L	0.683	0.67
412_I	417_V	0.682	0.67
200_L	203_I	0.681	0.67
46_L	261_Y	0.680	0.67
106_Y	128_L	0.678	0.67
179_A	205_D	0.676	0.66
418_A	428_S	0.676	0.66
328_V	342_A	0.670	0.66
37_I	43_E	0.667	0.65
169_R	209_D	0.667	0.65
84_Q	111_L	0.667	0.65
326_R	330_D	0.666	0.65
264_L	378_V	0.665	0.65
184_F	187_K	0.665	0.65
312_F	317_R	0.663	0.65
315_K	321_K	0.662	0.65
338_T	341_R	0.661	0.65
222_A	400_L	0.657	0.64
416_T	419_K	0.657	0.64
32_E	36_Y	0.656	0.64
362_S	376_Y	0.655	0.64
173_A	177_V	0.655	0.64
135_A	139_L	0.653	0.64
128_L	135_A	0.648	0.63
401_V	412_I	0.647	0.63
418_A	422_D	0.645	0.63
235_F	251_S	0.644	0.63
139_L	142_L	0.644	0.63
218_G	360_F	0.640	0.62
120_D	153_R	0.640	0.62
9_Q	350_T	0.637	0.62
327_E	330_D	0.636	0.62
158_C	161_L	0.636	0.62
292_R	296_Q	0.636	0.62
427_P	431_A	0.636	0.62
298_I	356_E	0.635	0.62
116_Y	218_G	0.634	0.61
163_L	170_N	0.633	0.61
345_G	356_E	0.632	0.61
313_F	359_L	0.632	0.61
68_N	71_E	0.632	0.61
206_I	210_I	0.632	0.61
9_Q	36_Y	0.632	0.61
94_M	339_V	0.631	0.61
311_D	315_K	0.631	0.61
429_S	434_R	0.631	0.61
34_A	38_D	0.630	0.61
388_Q	395_L	0.629	0.61
35_E	39_E	0.629	0.61
189_W	334_L	0.629	0.61
25_L	344_K	0.629	0.61
328_V	361_F	0.629	0.61
286_W	290_A	0.628	0.61
364_K	372_D	0.626	0.60
184_F	210_I	0.626	0.60
301_I	305_L	0.625	0.60
210_I	328_V	0.624	0.60
293_Q	298_I	0.624	0.60
368_S	405_Y	0.623	0.60
281_Y	284_W	0.622	0.60
189_W	200_L	0.621	0.60
158_C	215_P	0.621	0.60
69_A	386_I	0.620	0.60
417_V	422_D	0.620	0.60
365_A	380_T	0.619	0.60
25_L	247_L	0.618	0.59
308_R	321_K	0.617	0.59
118_E	154_S	0.616	0.59
117_L	152_A	0.616	0.59
378_V	412_I	0.615	0.59
208_D	211_A	0.613	0.59
290_A	298_I	0.612	0.59
426_I	432_R	0.611	0.59
72_A	76_L	0.611	0.59
176_L	193_S	0.610	0.58
143_Q	218_G	0.610	0.58
159_I	177_V	0.609	0.58
343_I	357_M	0.608	0.58
312_F	356_E	0.607	0.58
156_Q	177_V	0.607	0.58
174_E	177_V	0.607	0.58
273_T	276_Y	0.606	0.58
28_Y	396_S	0.606	0.58
29_H	298_I	0.606	0.58
260_Q	264_L	0.606	0.58
175_M	180_H	0.603	0.58
336_E	418_A	0.603	0.58
400_L	403_L	0.603	0.58
97_T	138_V	0.602	0.57
199_P	203_I	0.601	0.57
394_P	432_R	0.600	0.57
153_R	158_C	0.600	0.57
274_V	278_S	0.599	0.57
250_R	292_R	0.598	0.57
22_A	210_I	0.598	0.57
230_I	270_C	0.598	0.57
127_R	424_M	0.598	0.57
289_R	335_H	0.597	0.57
26_L	335_H	0.597	0.57
245_A	299_T	0.597	0.57
170_N	177_V	0.596	0.57
418_A	426_I	0.595	0.57
22_A	335_H	0.594	0.56
91_S	138_V	0.594	0.56
344_K	358_K	0.593	0.56
328_V	332_L	0.592	0.56
302_I	306_I	0.591	0.56
19_L	22_A	0.589	0.56
418_A	430_A	0.588	0.56
272_D	275_S	0.588	0.56
206_I	256_D	0.588	0.56
14_Q	17_Q	0.587	0.56
39_E	369_G	0.587	0.56
243_I	306_I	0.583	0.55
333_S	386_I	0.583	0.55
20_R	289_R	0.582	0.55
168_N	209_D	0.580	0.55
19_L	27_G	0.579	0.55
325_L	340_S	0.577	0.54
154_S	179_A	0.576	0.54
301_I	342_A	0.575	0.54
301_I	328_V	0.574	0.54
47_I	288_S	0.573	0.54
106_Y	110_S	0.572	0.54
98_N	140_A	0.572	0.54
208_D	212_A	0.571	0.54
354_L	428_S	0.571	0.54
22_A	396_S	0.570	0.53
75_Q	78_N	0.569	0.53
137_A	140_A	0.565	0.53
20_R	37_I	0.565	0.53
120_D	131_S	0.565	0.53
119_E	127_R	0.564	0.53
123_E	127_R	0.564	0.53
430_A	433_K	0.564	0.53
140_A	143_Q	0.563	0.53
286_W	334_L	0.562	0.52
15_L	429_S	0.561	0.52
27_G	163_L	0.560	0.52
173_A	181_F	0.560	0.52
289_R	328_V	0.559	0.52
243_I	352_Y	0.558	0.52
184_F	423_Q	0.557	0.52
276_Y	280_K	0.555	0.52
66_R	69_A	0.554	0.51
139_L	151_G	0.553	0.51
307_T	310_K	0.553	0.51
316_G	319_A	0.552	0.51
98_N	101_K	0.552	0.51
267_S	277_L	0.551	0.51
169_R	173_A	0.549	0.51
346_K	420_Y	0.548	0.51
375_N	382_L	0.548	0.51
317_R	380_T	0.547	0.50
18_E	24_T	0.546	0.50
297_T	332_L	0.546	0.50
265_L	273_T	0.546	0.50
98_N	102_K	0.546	0.50
263_T	267_S	0.545	0.50
51_E	58_S	0.544	0.50
101_K	417_V	0.542	0.50
240_N	266_S	0.541	0.50
318_S	380_T	0.541	0.50
35_E	38_D	0.541	0.50
184_F	352_Y	0.539	0.49
20_R	335_H	0.539	0.49
192_L	198_I	0.539	0.49
233_D	248_N	0.539	0.49
40_L	47_I	0.538	0.49
37_I	49_R	0.538	0.49
5_L	374_S	0.537	0.49
178_S	205_D	0.537	0.49
23_I	324_T	0.536	0.49
89_Q	93_D	0.535	0.49
46_L	259_P	0.535	0.49
29_H	258_H	0.535	0.49
237_T	244_A	0.534	0.49
135_A	138_V	0.534	0.49
46_L	210_I	0.533	0.49
140_A	164_Q	0.533	0.49
146_E	151_G	0.532	0.49
88_K	109_H	0.531	0.48
323_L	360_F	0.531	0.48
130_V	134_E	0.531	0.48
15_L	19_L	0.531	0.48
22_A	26_L	0.530	0.48
185_A	216_R	0.528	0.48
399_K	433_K	0.528	0.48
176_L	388_Q	0.527	0.48
189_W	211_A	0.527	0.48
255_I	422_D	0.527	0.48
191_T	195_E	0.527	0.48
27_G	286_W	0.525	0.48
141_K	151_G	0.525	0.48
121_I	221_F	0.525	0.48
163_L	166_L	0.524	0.48
107_L	121_I	0.523	0.47
56_P	65_N	0.522	0.47
295_K	413_S	0.520	0.47
6_Q	9_Q	0.520	0.47
415_R	419_K	0.519	0.47
341_R	415_R	0.519	0.47
399_K	406_E	0.519	0.47
17_Q	41_S	0.518	0.47
303_N	331_C	0.518	0.47
300_R	357_M	0.518	0.47
116_Y	346_K	0.518	0.47
381_H	410_I	0.518	0.47
343_I	365_A	0.517	0.47
53_D	400_L	0.517	0.47
243_I	310_K	0.517	0.47
305_L	328_V	0.517	0.47
193_S	199_P	0.516	0.47
375_N	379_K	0.516	0.47
27_G	253_P	0.516	0.47
16_T	22_A	0.515	0.46
385_L	396_S	0.515	0.46
111_L	365_A	0.515	0.46
120_D	154_S	0.514	0.46
108_I	424_M	0.513	0.46
156_Q	406_E	0.513	0.46
26_L	33_L	0.513	0.46
4_K	349_Q	0.512	0.46
188_K	412_I	0.512	0.46
95_N	141_K	0.512	0.46
359_L	362_S	0.511	0.46
43_E	283_E	0.511	0.46
24_T	36_Y	0.510	0.46
348_I	355_F	0.509	0.46
397_D	421_R	0.509	0.46
178_S	201_H	0.509	0.46
265_L	379_K	0.508	0.46
207_S	211_A	0.508	0.46
109_H	284_W	0.507	0.45
111_L	372_D	0.506	0.45
280_K	320_M	0.506	0.45
397_D	415_R	0.504	0.45
158_C	185_A	0.504	0.45
243_I	413_S	0.503	0.45
176_L	369_G	0.503	0.45
28_Y	47_I	0.502	0.45
414_R	419_K	0.502	0.45
297_T	346_K	0.502	0.45
333_S	399_K	0.501	0.45
29_H	433_K	0.501	0.45
12_K	289_R	0.500	0.45
69_A	422_D	0.500	0.45
338_T	415_R	0.500	0.45

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2k9mA	1	0.2982	100	0.745	Contact Map
2ahqA	1	0.1537	99.9	0.802	Contact Map
2k9lA	1	0.1743	99.6	0.878	Contact Map
1k78A	1	0.2729	96.4	0.949	Contact Map
1jyeA	2	0.0665	96.3	0.949	Contact Map
1zs4A	4	0.1835	96.2	0.95	Contact Map
3dbiA	2	0.0688	96.1	0.95	Contact Map
1qpzA	2	0.2271	95.9	0.951	Contact Map
1uxcA	1	0.1009	95.9	0.951	Contact Map
1pdnC	1	0.2706	95.8	0.951	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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