GREMLIN Database
COX1 - Cytochrome c oxidase subunit 1
UniProt: P24010 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 622 (509)
Sequences: 3822 (1212)
Seq/√Len: 53.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
436_Q464_S5.2821.00
266_V399_A4.8641.00
34_A113_F4.3341.00
405_W485_T4.1971.00
344_T418_G4.1861.00
35_G85_L3.9561.00
366_L381_V3.8771.00
38_F120_G3.8041.00
344_T415_E3.6311.00
259_A396_G3.5881.00
186_T189_R3.5331.00
262_I400_G3.5111.00
196_T285_I3.5041.00
271_A335_I3.3971.00
177_I198_F3.3481.00
199_V289_G3.2881.00
192_L275_L3.2851.00
94_V177_I3.1431.00
278_Y282_V3.1421.00
45_E69_V3.0871.00
424_L474_A3.0261.00
187_Y190_L2.8351.00
29_I92_A2.7691.00
335_I346_M2.7261.00
61_L69_V2.7001.00
387_Y430_H2.5611.00
178_I187_Y2.4941.00
139_S240_W2.4641.00
17_D26_K2.4231.00
135_A152_I2.4221.00
431_L467_G2.4001.00
267_I353_I2.3971.00
57_E450_T2.3751.00
302_T376_H2.3391.00
291_L320_I2.3241.00
351_S426_F2.3161.00
402_H421_S2.3151.00
270_F403_F2.2971.00
416_T420_I2.2761.00
348_Y421_S2.1871.00
414_H484_W2.1851.00
48_F61_L2.1491.00
269_V403_F2.1431.00
321_A364_V2.1411.00
75_T139_S2.1361.00
51_I469_F2.0981.00
415_E419_K2.0891.00
56_P458_E2.0741.00
335_I350_V2.0711.00
398_L478_L2.0691.00
428_G470_F2.0661.00
199_V286_V2.0441.00
64_Q68_E2.0061.00
424_L477_L2.0051.00
63_A449_Y1.9831.00
75_T155_F1.9691.00
466_I470_F1.9511.00
207_A293_F1.9391.00
417_M477_L1.9371.00
421_S478_L1.8990.99
159_L215_L1.8980.99
439_V460_G1.8820.99
81_A394_V1.8650.99
417_M480_V1.8530.99
431_L463_I1.8430.99
262_I266_V1.8370.99
458_E462_L1.8330.99
407_K509_S1.8290.99
417_M420_I1.7960.99
248_G251_E1.7950.99
153_D222_R1.7700.99
272_R341_K1.7610.99
365_M380_F1.7610.99
247_F251_E1.7310.99
264_S331_W1.7240.99
260_F324_T1.7120.99
48_F69_V1.7120.99
401_V478_L1.6830.99
411_K489_G1.6780.99
177_I190_L1.6750.99
178_I198_F1.6720.99
484_W488_K1.6640.99
221_D226_T1.6630.99
42_G76_T1.6610.99
113_F117_F1.6590.99
371_A375_F1.6460.99
40_L479_L1.6340.98
266_V400_G1.6320.98
256_I260_F1.6240.98
138_T244_F1.6170.98
49_I69_V1.6080.98
421_S425_F1.6000.98
270_F345_A1.5780.98
348_Y398_L1.5700.98
267_I335_I1.5660.98
174_L198_F1.5640.98
28_A88_A1.5610.98
34_A116_F1.5490.98
241_E377_D1.5450.98
340_V346_M1.5400.98
434_F438_F1.5370.98
185_M191_P1.5360.98
255_L389_I1.5330.98
93_V403_F1.5240.98
412_I492_V1.5210.97
484_W490_E1.5140.97
349_A399_A1.5120.97
15_L19_L1.5060.97
355_S430_H1.5000.97
34_A117_F1.4940.97
421_S475_V1.4840.97
207_A254_I1.4800.97
185_M190_L1.4780.97
177_I194_T1.4710.97
108_L168_I1.4610.97
54_A462_L1.4560.97
469_F473_A1.4530.97
281_M285_I1.4500.97
135_A144_S1.4490.97
217_L229_F1.4420.97
204_I208_F1.4380.96
262_I404_W1.4340.96
170_G205_L1.4290.96
178_I202_A1.4280.96
210_P246_I1.4200.96
214_G240_W1.4120.96
402_H418_G1.4110.96
32_L88_A1.4050.96
181_R184_G1.4000.96
421_S474_A1.3990.96
351_S422_F1.3970.96
41_V76_T1.3830.96
141_A240_W1.3800.96
432_T468_A1.3730.95
383_A437_H1.3680.95
174_L205_L1.3660.95
97_Q194_T1.3640.95
268_P275_L1.3490.95
507_V515_N1.3480.95
266_V349_A1.3450.95
288_I327_K1.3420.95
87_F170_G1.3410.95
398_L421_S1.3260.94
480_V484_W1.3170.94
47_M468_A1.3130.94
51_I60_F1.3090.94
432_T471_M1.2980.94
489_G492_V1.2960.94
514_Y517_K1.2950.94
44_I48_F1.2790.93
220_L226_T1.2760.93
47_M472_A1.2740.93
47_M465_T1.2660.93
21_T26_K1.2630.93
23_D26_K1.2620.93
411_K485_T1.2580.93
424_L473_A1.2560.93
18_Y30_L1.2550.93
91_N172_N1.2440.92
281_M284_A1.2400.92
80_L162_S1.2390.92
199_V285_I1.2390.92
270_F346_M1.2370.92
416_T419_K1.2360.92
153_D223_L1.2330.92
94_V194_T1.2320.92
387_Y434_F1.2240.92
344_T419_K1.2200.91
425_F474_A1.2200.91
480_V483_I1.2170.91
266_V345_A1.2150.91
139_S155_F1.2110.91
32_L408_M1.2100.91
184_G189_R1.2090.91
348_Y402_H1.2080.91
94_V98_I1.2060.91
52_Q59_A1.2040.91
32_L85_L1.2030.91
396_G399_A1.2020.91
508_S511_P1.1970.91
93_V408_M1.1970.91
364_V367_A1.1930.91
459_T463_I1.1900.90
41_V45_E1.1890.90
282_V285_I1.1820.90
138_T376_H1.1810.90
508_S512_P1.1810.90
507_V511_P1.1770.90
86_L397_L1.1740.90
436_Q439_V1.1730.90
170_G201_S1.1720.90
347_L422_F1.1670.90
133_P155_F1.1660.90
72_M127_W1.1610.89
444_M461_N1.1590.89
21_T110_A1.1560.89
430_H434_F1.1560.89
263_F352_F1.1530.89
199_V202_A1.1490.89
335_I340_V1.1480.89
193_F197_T1.1460.89
317_T367_A1.1430.89
39_F46_A1.1410.88
139_S152_I1.1350.88
187_Y198_F1.1330.88
215_L219_M1.1260.88
135_A139_S1.1250.88
110_A114_W1.1210.88
476_I480_V1.1200.88
13_S17_D1.1190.88
123_L158_G1.1140.87
39_F81_A1.1100.87
65_A69_V1.1090.87
507_V516_F1.1070.87
347_L419_K1.1040.87
302_T373_Y1.0990.87
318_M367_A1.0980.86
391_G429_F1.0970.86
227_N230_N1.0960.86
15_L30_L1.0940.86
91_N109_N1.0900.86
141_A218_M1.0860.86
160_Q216_A1.0820.86
80_L120_G1.0820.86
192_L281_M1.0730.85
119_G158_G1.0630.85
379_Y444_M1.0600.85
144_S218_M1.0570.84
509_S512_P1.0560.84
141_A144_S1.0540.84
75_T240_W1.0510.84
264_S327_K1.0490.84
36_G40_L1.0490.84
52_Q57_E1.0470.84
220_L224_F1.0470.84
260_F331_W1.0450.84
29_I408_M1.0440.84
438_F460_G1.0430.84
90_M197_T1.0410.83
366_L375_F1.0340.83
428_G467_G1.0340.83
453_P456_G1.0310.83
406_P412_I1.0210.82
256_I392_G1.0190.82
82_A389_I1.0170.82
206_F293_F1.0160.82
421_S477_L1.0160.82
81_A85_L1.0120.82
66_Y70_M1.0080.81
421_S481_N1.0080.81
383_A436_Q1.0070.81
425_F471_M1.0070.81
317_T366_L1.0060.81
314_A369_A1.0030.81
18_Y26_K1.0010.81
188_M283_F0.9990.81
48_F60_F0.9980.81
466_I469_F0.9940.80
345_A403_F0.9910.80
76_T124_N0.9860.80
321_A327_K0.9860.80
472_A476_I0.9840.80
327_K331_W0.9830.80
342_Y350_V0.9790.79
42_G78_I0.9770.79
166_T204_I0.9700.79
139_S144_S0.9660.79
182_A519_L0.9660.79
181_R189_R0.9660.79
200_A254_I0.9610.78
92_A408_M0.9600.78
83_M248_G0.9600.78
256_I393_V0.9580.78
64_Q134_D0.9570.78
445_P448_V0.9570.78
86_L259_A0.9540.78
39_F42_G0.9510.77
41_V124_N0.9500.77
183_P519_L0.9470.77
263_F349_A0.9450.77
495_D500_G0.9400.77
112_G168_I0.9370.76
389_I393_V0.9360.76
125_L154_F0.9360.76
345_A413_L0.9340.76
163_G212_T0.9310.76
111_L115_L0.9310.76
192_L445_P0.9300.76
420_I477_L0.9280.76
85_L397_L0.9250.75
260_F325_G0.9190.75
270_F497_W0.9160.75
511_P516_F0.9150.75
55_K58_N0.9150.75
462_L466_I0.9150.75
88_A409_F0.9140.75
49_I74_G0.9120.74
82_A255_L0.9100.74
405_W413_L0.9080.74
411_K486_S0.9020.74
174_L202_A0.8950.73
217_L228_F0.8950.73
127_W130_G0.8930.73
87_F204_I0.8920.73
173_F197_T0.8910.73
483_I487_V0.8910.73
418_G481_N0.8880.72
16_W20_T0.8860.72
191_P194_T0.8850.72
398_L425_F0.8850.72
126_S133_P0.8830.72
173_F177_I0.8830.72
435_I460_G0.8820.72
351_S395_F0.8810.72
98_I194_T0.8800.72
272_R498_H0.8790.72
324_T327_K0.8780.72
182_A185_M0.8780.72
270_F343_T0.8780.72
53_L379_Y0.8760.71
89_L262_I0.8760.71
251_E255_L0.8750.71
343_T419_K0.8690.71
24_H96_L0.8690.71
94_V197_T0.8660.71
160_Q215_L0.8630.70
36_G479_L0.8600.70
260_F284_A0.8580.70
91_N102_D0.8490.69
196_T257_L0.8450.69
425_F475_V0.8440.69
387_Y437_H0.8430.68
342_Y346_M0.8430.68
79_F247_F0.8430.68
415_E418_G0.8410.68
361_V391_G0.8370.68
448_V461_N0.8330.68
263_F267_I0.8330.68
203_L317_T0.8320.67
34_A38_F0.8310.67
413_L489_G0.8280.67
464_S467_G0.8250.67
30_L113_F0.8210.66
344_T347_L0.8190.66
105_F175_A0.8150.66
424_L470_F0.8120.66
26_K30_L0.8120.66
310_N373_Y0.8120.66
83_M204_I0.8110.65
43_G475_V0.8090.65
354_P358_L0.8080.65
208_F251_E0.8060.65
427_I470_F0.8040.65
379_Y461_N0.8040.65
401_V482_V0.8030.65
260_F327_K0.7990.64
53_L461_N0.7980.64
52_Q450_T0.7980.64
160_Q219_M0.7950.64
413_L418_G0.7940.64
87_F92_A0.7930.64
347_L423_V0.7930.64
227_N233_L0.7920.64
190_L194_T0.7920.64
83_M247_F0.7890.63
327_K330_N0.7860.63
119_G162_S0.7860.63
266_V396_G0.7860.63
345_A399_A0.7850.63
196_T275_L0.7830.63
292_G377_D0.7830.63
412_I485_T0.7820.63
189_R522_V0.7810.62
477_L480_V0.7800.62
242_H300_M0.7790.62
365_M371_A0.7780.62
99_G503_L0.7770.62
352_F388_V0.7760.62
181_R185_M0.7720.62
34_A120_G0.7700.61
162_S165_G0.7700.61
214_G244_F0.7670.61
398_L402_H0.7600.60
335_I338_G0.7560.60
134_D147_S0.7560.60
477_L481_N0.7550.60
78_I255_L0.7530.60
284_A287_L0.7490.59
14_M17_D0.7480.59
280_S284_A0.7460.59
156_V219_M0.7460.59
160_Q212_T0.7410.58
290_F294_M0.7400.58
22_V110_A0.7400.58
414_H480_V0.7390.58
24_H28_A0.7380.58
164_L168_I0.7380.58
163_G327_K0.7370.58
83_M251_E0.7360.58
82_A393_V0.7350.58
274_R279_S0.7350.58
412_I489_G0.7340.58
61_L65_A0.7330.58
494_A508_S0.7330.58
297_V305_L0.7310.57
361_V364_V0.7290.57
238_V303_T0.7290.57
301_F369_A0.7290.57
43_G472_A0.7280.57
59_A450_T0.7280.57
405_W409_F0.7280.57
357_V361_V0.7270.57
248_G255_L0.7260.57
83_M112_G0.7260.57
40_L44_I0.7260.57
495_D498_H0.7230.57
242_H437_H0.7220.56
370_A389_I0.7220.56
93_V97_Q0.7210.56
116_F165_G0.7210.56
247_F255_L0.7200.56
122_F154_F0.7160.56
412_I493_G0.7160.56
405_W411_K0.7110.55
428_G474_A0.7100.55
331_W352_F0.7090.55
405_W486_S0.7090.55
169_A214_G0.7060.55
103_V116_F0.7050.55
427_I431_L0.7030.54
238_V377_D0.7010.54
90_M173_F0.7010.54
62_S65_A0.7000.54
85_L398_L0.7000.54
60_F65_A0.6980.54
43_G47_M0.6980.54
33_V37_F0.6960.54
86_L393_V0.6950.54
268_P274_R0.6950.54
493_G509_S0.6920.53
321_A329_F0.6920.53
492_V509_S0.6920.53
18_Y25_K0.6890.53
219_M223_L0.6890.53
370_A375_F0.6870.53
199_V282_V0.6860.53
306_G310_N0.6860.53
202_A287_L0.6840.52
255_L393_V0.6820.52
156_V240_W0.6800.52
267_I349_A0.6790.52
263_F396_G0.6770.52
393_V397_L0.6760.52
479_L483_I0.6750.51
414_H485_T0.6740.51
281_M330_N0.6740.51
382_V441_L0.6740.51
40_L348_Y0.6730.51
486_S489_G0.6730.51
112_G169_A0.6720.51
133_P240_W0.6710.51
46_A391_G0.6700.51
463_I467_G0.6690.51
275_L278_Y0.6680.51
170_G207_A0.6670.51
249_H298_H0.6660.51
43_G46_A0.6650.50
267_I271_A0.6650.50
427_I476_I0.6650.50
276_F327_K0.6620.50
37_F121_I0.6610.50
398_L475_V0.6600.50
414_H417_M0.6590.50
24_H104_S0.6580.50
82_A394_V0.6580.50
87_F90_M0.6570.50
221_D227_N0.6560.49
402_H481_N0.6550.49
86_L111_L0.6550.49
72_M133_P0.6540.49
352_F392_G0.6530.49
314_A368_A0.6500.49
256_I388_V0.6500.49
346_M349_A0.6500.49
259_A263_F0.6500.49
425_F483_I0.6470.49
147_S150_H0.6460.48
81_A197_T0.6460.48
381_V385_F0.6460.48
507_V512_P0.6450.48
71_T75_T0.6450.48
76_T120_G0.6440.48
300_M377_D0.6440.48
409_F412_I0.6430.48
318_M331_W0.6430.48
112_G173_F0.6410.48
51_I465_T0.6410.48
348_Y420_I0.6400.48
281_M326_I0.6400.48
208_F282_V0.6380.48
286_V476_I0.6370.47
302_T395_F0.6370.47
359_G388_V0.6370.47
465_T469_F0.6370.47
188_M278_Y0.6360.47
242_H377_D0.6360.47
328_I388_V0.6360.47
329_F351_S0.6340.47
203_L255_L0.6330.47
72_M155_F0.6320.47
256_I327_K0.6320.47
159_L211_L0.6310.47
256_I331_W0.6300.47
181_R220_L0.6290.47
236_N239_I0.6290.47
190_L198_F0.6290.47
481_N485_T0.6290.47
81_A349_A0.6280.46
75_T123_L0.6280.46
189_R515_N0.6270.46
58_N63_A0.6250.46
103_V169_A0.6240.46
303_T377_D0.6240.46
202_A289_G0.6230.46
312_I316_A0.6230.46
135_A147_S0.6230.46
397_L401_V0.6230.46
225_G489_G0.6220.46
52_Q146_H0.6210.46
48_F427_I0.6210.46
389_I392_G0.6210.46
362_T366_L0.6200.46
40_L476_I0.6190.46
204_I251_E0.6180.45
36_G482_V0.6170.45
409_F485_T0.6170.45
165_G236_N0.6150.45
14_M19_L0.6140.45
253_Y258_P0.6130.45
210_P214_G0.6120.45
406_P492_V0.6110.45
121_I125_L0.6110.45
13_S16_W0.6110.45
59_A449_Y0.6090.44
109_N176_T0.6090.44
167_L212_T0.6050.44
410_G511_P0.6050.44
42_G74_G0.6040.44
51_I205_L0.6040.44
344_T348_Y0.6020.44
236_N447_R0.6020.44
47_M469_F0.6020.44
46_A70_M0.6020.44
489_G496_P0.6020.44
267_I434_F0.6000.44
269_V497_W0.5990.43
271_A340_V0.5990.43
387_Y392_G0.5990.43
99_G182_A0.5970.43
372_D381_V0.5970.43
40_L475_V0.5970.43
165_G274_R0.5970.43
407_K497_W0.5970.43
453_P458_E0.5960.43
78_I82_A0.5960.43
270_F515_N0.5950.43
234_G304_G0.5950.43
45_E124_N0.5950.43
173_F201_S0.5940.43
293_F357_V0.5940.43
49_I255_L0.5940.43
264_S321_A0.5930.43
74_G78_I0.5930.43
25_K407_K0.5930.43
288_I331_W0.5930.43
99_G184_G0.5890.42
146_H149_G0.5880.42
46_A390_I0.5880.42
171_I175_A0.5860.42
338_G496_P0.5860.42
431_L435_I0.5860.42
27_I470_F0.5830.42
102_D109_N0.5830.42
357_V378_T0.5830.42
472_A492_V0.5830.42
431_L470_F0.5820.42
107_F236_N0.5820.42
121_I468_A0.5820.42
163_G172_N0.5810.42
276_F288_I0.5810.42
328_I353_I0.5790.41
30_L34_A0.5790.41
24_H297_V0.5780.41
201_S474_A0.5770.41
40_L472_A0.5760.41
256_I389_I0.5760.41
484_W487_V0.5750.41
260_F264_S0.5750.41
245_W248_G0.5750.41
184_G415_E0.5730.41
451_F457_L0.5730.41
278_Y497_W0.5720.41
224_F339_N0.5720.41
341_K498_H0.5710.41
78_I83_M0.5710.41
107_F111_L0.5700.40
202_A286_V0.5700.40
157_L161_I0.5700.40
31_Y91_N0.5700.40
86_L262_I0.5690.40
204_I248_G0.5680.40
25_K96_L0.5680.40
127_W155_F0.5680.40
207_A240_W0.5680.40
182_A189_R0.5670.40
181_R505_W0.5670.40
108_L112_G0.5670.40
37_F41_V0.5670.40
144_S240_W0.5670.40
49_I465_T0.5660.40
75_T135_A0.5660.40
268_P370_A0.5660.40
18_Y21_T0.5650.40
348_Y422_F0.5640.40
183_P278_Y0.5640.40
291_L323_P0.5630.40
353_I434_F0.5630.40
158_G162_S0.5620.40
208_F248_G0.5600.39
34_A267_I0.5590.39
103_V173_F0.5580.39
413_L483_I0.5580.39
208_F247_F0.5580.39
355_S426_F0.5580.39
254_I356_F0.5570.39
494_A507_V0.5560.39
383_A435_I0.5560.39
129_L465_T0.5560.39
167_L229_F0.5540.39
173_F317_T0.5540.39
67_N84_P0.5540.39
422_F426_F0.5520.39
166_T237_T0.5520.39
239_I447_R0.5520.39
406_P485_T0.5520.39
86_L217_L0.5520.39
189_R400_G0.5500.38
118_F161_I0.5490.38
211_L301_F0.5490.38
92_A116_F0.5490.38
378_T457_L0.5480.38
74_G385_F0.5470.38
166_T285_I0.5460.38
135_A141_A0.5460.38
48_F232_E0.5450.38
317_T385_F0.5450.38
207_A427_I0.5450.38
497_W509_S0.5440.38
322_I354_P0.5440.38
62_S474_A0.5440.38
213_V237_T0.5430.38
177_I254_I0.5420.38
411_K492_V0.5420.38
411_K491_Y0.5420.38
83_M166_T0.5410.38
27_I109_N0.5410.38
121_I124_N0.5410.38
322_I326_I0.5410.38
280_S376_H0.5410.38
302_T466_I0.5390.37
29_I55_K0.5380.37
86_L254_I0.5380.37
271_A346_M0.5380.37
262_I399_A0.5370.37
171_I376_H0.5370.37
50_R53_L0.5360.37
21_T30_L0.5350.37
216_A219_M0.5350.37
80_L119_G0.5350.37
79_F255_L0.5350.37
292_G393_V0.5340.37
196_T294_M0.5340.37
414_H420_I0.5320.37
296_W313_F0.5320.37
419_K423_V0.5300.36
40_L60_F0.5300.36
407_K507_V0.5300.36
127_W240_W0.5290.36
49_I82_A0.5290.36
188_M275_L0.5280.36
157_L216_A0.5280.36
67_N379_Y0.5270.36
367_A383_A0.5270.36
39_F43_G0.5270.36
256_I292_G0.5270.36
98_I190_L0.5270.36
360_G446_R0.5260.36
338_G418_G0.5260.36
417_M479_L0.5250.36
199_V247_F0.5240.36
45_E127_W0.5240.36
412_I496_P0.5240.36
355_S362_T0.5230.36
208_F212_T0.5230.36
221_D320_I0.5230.36
162_S208_F0.5220.36
109_N172_N0.5220.36
379_Y465_T0.5220.36
201_S254_I0.5220.36
103_V320_I0.5220.36
287_L511_P0.5220.36
276_F330_N0.5210.36
237_T241_E0.5210.36
304_G356_F0.5200.35
37_F479_L0.5200.35
175_A343_T0.5190.35
469_F472_A0.5190.35
342_Y400_G0.5180.35
55_K462_L0.5180.35
298_H360_G0.5170.35
506_T517_K0.5170.35
38_F349_A0.5170.35
190_L278_Y0.5170.35
383_A429_F0.5170.35
184_G418_G0.5160.35
294_M317_T0.5160.35
162_S166_T0.5150.35
83_M208_F0.5150.35
172_N327_K0.5130.35
135_A457_L0.5130.35
95_P106_P0.5130.35
113_F116_F0.5120.35
322_I449_Y0.5120.35
269_V515_N0.5120.35
79_F388_V0.5110.35
64_Q151_G0.5110.35
91_N163_G0.5110.35
357_V392_G0.5110.35
66_Y71_T0.5080.34
356_F392_G0.5080.34
452_L456_G0.5080.34
460_G463_I0.5070.34
199_V291_L0.5070.34
89_L471_M0.5070.34
196_T280_S0.5060.34
362_T437_H0.5060.34
100_A506_T0.5060.34
362_T385_F0.5060.34
67_N430_H0.5050.34
21_T24_H0.5050.34
81_A401_V0.5050.34
394_V408_M0.5040.34
415_E420_I0.5040.34
35_G198_F0.5030.34
38_F42_G0.5030.34
325_G364_V0.5020.34
389_I394_V0.5020.34
13_S19_L0.5020.34
260_F288_I0.5020.34
165_G215_L0.5000.34
388_V392_G0.5000.34
278_Y418_G0.5000.34
74_G87_F0.5000.34
80_L88_A0.5000.34
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1fftA 1 0.7926 100 0.158 Contact Map
2yevA 1 0.963 100 0.229 Contact Map
2gsmA 1 0.8023 100 0.278 Contact Map
1v54A 1 0.8199 100 0.296 Contact Map
3s8fA 1 0.8344 100 0.412 Contact Map
3ayfA 2 0.7492 100 0.443 Contact Map
3mk7A 1 0.709 100 0.469 Contact Map
3wfdB 1 0.6768 100 0.482 Contact Map
1m56C 2 0.1206 96.4 0.97 Contact Map
1qleC 1 0.1206 96.2 0.971 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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