YLXG - BACSU - GREMLIN Contacts

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YLXG - FlaA locus uncharacterized protein YlxG

UniProt:	P23455	Sequences: MTSISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQMMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDDGTEISPANVMSVGQSSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	140 (126)
Sequences:	1992 (1539)
Seq/√Len:	137.1

ECOLI - FLGD
BACSU - YLXG

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
47_D	50_E	4.359	1.00
25_G	28_E	3.558	1.00
41_D	44_N	3.254	1.00
128_S	131_N	2.981	1.00
24_L	28_E	2.705	1.00
64_M	67_L	2.612	1.00
94_W	127_I	2.519	1.00
67_L	71_M	2.386	1.00
92_V	107_V	2.258	1.00
60_S	64_M	2.203	1.00
53_S	57_T	2.149	1.00
26_K	62_E	2.084	1.00
27_D	31_K	2.048	1.00
44_N	47_D	1.858	1.00
109_S	120_V	1.855	1.00
57_T	60_S	1.794	1.00
63_Q	68_N	1.746	1.00
75_V	78_Q	1.741	1.00
37_V	51_F	1.704	1.00
50_E	53_S	1.693	1.00
91_E	106_T	1.628	1.00
94_W	103_K	1.603	1.00
105_G	121_L	1.601	1.00
111_K	126_E	1.599	1.00
61_L	64_M	1.585	1.00
26_K	66_N	1.559	1.00
85_V	135_V	1.483	1.00
93_S	102_D	1.470	1.00
93_S	134_S	1.444	1.00
84_Y	129_P	1.427	1.00
81_F	112_H	1.420	1.00
30_L	34_M	1.420	1.00
119_L	132_V	1.415	1.00
53_S	58_F	1.398	1.00
113_F	116_N	1.379	1.00
53_S	56_A	1.371	1.00
112_H	117_Y	1.366	1.00
52_I	58_F	1.278	1.00
56_A	61_L	1.250	1.00
83_T	87_W	1.246	1.00
59_S	62_E	1.240	1.00
48_D	51_F	1.236	1.00
91_E	104_T	1.201	1.00
71_M	74_F	1.201	1.00
51_F	58_F	1.184	1.00
43_L	51_F	1.180	0.99
44_N	48_D	1.172	0.99
32_I	84_Y	1.167	0.99
46_I	49_K	1.153	0.99
10_L	13_K	1.153	0.99
10_L	14_T	1.140	0.99
93_S	104_T	1.139	0.99
120_V	126_E	1.134	0.99
13_K	17_V	1.123	0.99
87_W	119_L	1.121	0.99
28_E	31_K	1.106	0.99
62_E	66_N	1.101	0.99
67_L	70_T	1.099	0.99
118_Y	128_S	1.096	0.99
118_Y	126_E	1.077	0.99
33_L	52_I	1.068	0.99
60_S	67_L	1.068	0.99
35_T	38_Q	1.029	0.99
69_T	72_T	1.024	0.99
121_L	124_G	1.013	0.98
11_P	14_T	1.004	0.98
48_D	55_M	0.990	0.98
34_M	38_Q	0.987	0.98
107_V	119_L	0.972	0.98
92_V	121_L	0.962	0.98
35_T	39_N	0.957	0.98
27_D	69_T	0.947	0.98
15_N	18_S	0.939	0.97
22_S	25_G	0.927	0.97
52_I	55_M	0.921	0.97
81_F	85_V	0.915	0.97
26_K	63_Q	0.901	0.97
119_L	129_P	0.890	0.96
60_S	63_Q	0.872	0.96
64_M	71_M	0.871	0.96
26_K	65_M	0.864	0.96
25_G	58_F	0.855	0.96
37_V	49_K	0.850	0.95
12_E	15_N	0.838	0.95
65_M	69_T	0.830	0.95
74_F	79_D	0.820	0.94
40_Q	45_P	0.819	0.94
105_G	122_D	0.806	0.94
81_F	84_Y	0.803	0.94
106_T	122_D	0.801	0.94
82_T	85_V	0.781	0.93
111_K	120_V	0.774	0.93
43_L	48_D	0.756	0.92
121_L	126_E	0.753	0.92
74_F	78_Q	0.752	0.91
105_G	123_D	0.748	0.91
28_E	33_L	0.744	0.91
25_G	56_A	0.738	0.91
25_G	51_F	0.736	0.91
84_Y	117_Y	0.728	0.90
24_L	52_I	0.723	0.90
84_Y	110_V	0.722	0.90
32_I	45_P	0.721	0.90
108_S	120_V	0.719	0.90
67_L	74_F	0.718	0.90
39_N	44_N	0.713	0.89
28_E	55_M	0.711	0.89
31_K	38_Q	0.711	0.89
85_V	88_M	0.711	0.89
14_T	17_V	0.711	0.89
26_K	64_M	0.709	0.89
116_N	130_A	0.709	0.89
99_S	102_D	0.705	0.89
11_P	15_N	0.705	0.89
17_V	72_T	0.697	0.88
36_Q	56_A	0.696	0.88
26_K	58_F	0.694	0.88
47_D	51_F	0.681	0.87
48_D	52_I	0.681	0.87
18_S	21_N	0.678	0.87
127_I	132_V	0.677	0.87
87_W	129_P	0.671	0.86
49_K	52_I	0.665	0.86
102_D	133_M	0.661	0.85
108_S	118_Y	0.659	0.85
81_F	88_M	0.659	0.85
16_T	21_N	0.658	0.85
14_T	19_T	0.658	0.85
26_K	55_M	0.656	0.85
25_G	65_M	0.649	0.84
19_T	22_S	0.649	0.84
52_I	60_S	0.648	0.84
63_Q	66_N	0.641	0.83
98_K	101_T	0.639	0.83
75_V	79_D	0.638	0.83
13_K	16_T	0.635	0.83
32_I	52_I	0.633	0.83
116_N	128_S	0.631	0.83
51_F	59_S	0.630	0.82
108_S	122_D	0.627	0.82
19_T	23_S	0.626	0.82
34_M	55_M	0.621	0.82
35_T	46_I	0.617	0.81
26_K	34_M	0.614	0.81
10_L	17_V	0.614	0.81
50_E	57_T	0.614	0.81
87_W	92_V	0.613	0.81
55_M	59_S	0.609	0.80
82_T	129_P	0.608	0.80
49_K	53_S	0.608	0.80
26_K	46_I	0.606	0.80
58_F	63_Q	0.598	0.79
53_S	102_D	0.598	0.79
73_Q	77_N	0.591	0.78
27_D	34_M	0.591	0.78
58_F	70_T	0.584	0.77
127_I	133_M	0.577	0.77
103_K	125_T	0.576	0.76
36_Q	45_P	0.574	0.76
37_V	109_S	0.574	0.76
36_Q	57_T	0.573	0.76
110_V	119_L	0.573	0.76
51_F	55_M	0.565	0.75
70_T	75_V	0.558	0.74
87_W	132_V	0.557	0.74
81_F	111_K	0.548	0.73
51_F	63_Q	0.543	0.72
51_F	61_L	0.542	0.72
56_A	59_S	0.540	0.72
22_S	26_K	0.540	0.72
82_T	88_M	0.537	0.71
66_N	72_T	0.537	0.71
30_L	51_F	0.536	0.71
69_T	73_Q	0.527	0.70
16_T	19_T	0.526	0.70
32_I	48_D	0.526	0.70
107_V	135_V	0.523	0.69
52_I	97_G	0.518	0.69
66_N	69_T	0.518	0.69
22_S	28_E	0.515	0.68
85_V	90_K	0.514	0.68
95_T	99_S	0.513	0.68
56_A	60_S	0.506	0.67
111_K	117_Y	0.506	0.67
30_L	63_Q	0.506	0.67
33_L	55_M	0.505	0.67
109_S	134_S	0.504	0.67
71_M	75_V	0.502	0.66
17_V	20_N	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3c12A	2	0.4143	96.8	0.824	Contact Map
3osvA	2	0.6357	94.8	0.85	Contact Map
4a53A	1	0.4429	27.2	0.921	Contact Map
2vc8A	1	0.4	23	0.924	Contact Map
3htrA	2	0.45	11.1	0.934	Contact Map
1vt0M	4	0.4357	10.4	0.935	Contact Map
2vxeA	1	0.3786	9.8	0.936	Contact Map
2wacA	1	0.7357	9.4	0.937	Contact Map
2g3rA	2	0.3786	8.5	0.938	Contact Map
1pm3A	2	0.3929	7.6	0.939	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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