GREMLIN Database
FLIF - Flagellar M-ring protein
UniProt: P23447 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 536 (502)
Sequences: 1963 (1533)
Seq/√Len: 68.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
265_K376_E7.5931.00
306_E343_K5.1111.00
74_V95_L4.6301.00
284_D354_R4.5551.00
50_M77_E4.2061.00
215_D219_T4.1241.00
299_V351_E4.0561.00
300_S349_N4.0541.00
272_A369_L3.9401.00
275_D367_R3.8051.00
91_Q94_S3.7661.00
273_D367_R3.7271.00
196_Y213_I3.7121.00
391_Q395_Q3.6991.00
450_L454_I3.3031.00
145_N152_N3.2231.00
303_K346_N3.1671.00
399_S403_R3.1451.00
151_K182_Q3.1281.00
151_K180_Q3.0721.00
301_A348_I3.0481.00
304_V345_S3.0181.00
116_G134_K2.9801.00
145_N153_S2.9791.00
299_V352_V2.9001.00
238_Q276_F2.7861.00
464_I468_I2.6871.00
390_R393_D2.6821.00
302_E347_K2.6591.00
280_N358_E2.6491.00
278_K360_A2.6091.00
395_Q399_S2.5071.00
20_S23_Q2.4881.00
287_E353_N2.4811.00
297_I352_V2.4601.00
134_K138_T2.3861.00
39_I43_V2.3581.00
403_R408_K2.3441.00
398_L418_D2.2981.00
68_E102_E2.2901.00
465_V469_M2.2261.00
389_E393_D2.2051.00
181_I187_L2.1861.00
172_A210_N2.1721.00
13_S17_K2.1601.00
254_Q258_G2.1411.00
68_E71_A2.1211.00
25_I29_S2.0981.00
277_T362_S2.0901.00
258_G264_D2.0871.00
371_I406_L2.0801.00
113_S142_N2.0711.00
408_K416_L2.0681.00
245_V274_I2.0631.00
174_S210_N2.0541.00
49_K89_E2.0391.00
305_S344_N2.0301.00
143_L178_V2.0221.00
111_D138_T2.0121.00
282_T356_H2.0021.00
32_A36_I1.9561.00
207_K210_N1.9101.00
378_P393_D1.9101.00
516_K520_D1.8741.00
113_S138_T1.8651.00
377_P386_L1.8571.00
150_I181_I1.8261.00
308_Y341_Y1.8041.00
70_D76_N1.8011.00
72_K95_L1.8011.00
173_A206_L1.7731.00
87_V95_L1.7531.00
283_E355_I1.7511.00
79_S86_S1.7511.00
257_L261_M1.7361.00
70_D94_S1.7311.00
403_R416_L1.7241.00
393_D396_K1.7221.00
298_A348_I1.6830.99
72_K98_Q1.6790.99
114_F134_K1.6710.99
258_G266_V1.6440.99
61_E64_Q1.6370.99
395_Q400_T1.6310.99
317_G320_G1.6220.99
299_V349_N1.6180.99
307_T342_E1.6160.99
283_E357_K1.6160.99
172_A207_K1.6130.99
105_P197_H1.6030.99
398_L402_V1.5810.99
298_A301_A1.5690.99
373_V402_V1.5510.99
241_I274_I1.5450.99
99_M105_P1.5380.99
67_E70_D1.5370.99
177_I199_V1.5360.99
242_K246_E1.5310.99
113_S134_K1.5260.99
79_S82_G1.5240.99
242_K274_I1.5180.99
286_V299_V1.5170.99
201_K212_V1.5130.99
254_Q266_V1.5080.99
43_V47_N1.4970.99
402_V405_S1.4960.99
116_G138_T1.4920.99
52_P84_V1.4910.99
68_E72_K1.4780.99
451_W455_V1.4780.99
247_K251_K1.4630.99
94_S98_Q1.4620.99
52_P55_K1.4580.99
418_D423_N1.4510.98
113_S116_G1.4480.98
75_P88_P1.4470.98
88_P95_L1.4420.98
196_Y222_D1.4370.98
282_T358_E1.4340.98
32_A39_I1.4270.98
288_P297_I1.4230.98
245_V272_A1.4050.98
111_D139_E1.3930.98
300_S351_E1.3720.98
114_F138_T1.3720.98
159_L173_A1.3670.98
454_I458_V1.3650.98
57_L65_I1.3610.98
306_E341_Y1.3410.97
281_R361_E1.3350.97
249_I406_L1.3290.97
301_A346_N1.3280.97
447_G451_W1.3200.97
66_K76_N1.3180.97
245_V249_I1.3120.97
326_V329_Y1.3040.97
21_K25_I1.3020.97
297_I353_N1.2980.97
447_G450_L1.2970.97
143_L156_M1.2960.97
245_V366_V1.2960.97
248_D252_H1.2920.97
320_G323_E1.2860.97
404_T415_N1.2830.97
51_A89_E1.2770.97
279_E361_E1.2740.97
58_S61_E1.2730.97
96_K154_K1.2580.96
130_M134_K1.2560.96
402_V416_L1.2530.96
77_E86_S1.2440.96
303_K348_I1.2370.96
289_V297_I1.2290.96
376_E423_N1.2240.96
467_I471_I1.2190.96
41_I45_A1.2180.95
40_I44_F1.2110.95
52_P86_S1.2100.95
460_I464_I1.2100.95
466_L470_L1.2100.95
454_I457_G1.2050.95
80_N84_V1.2050.95
321_T325_D1.2030.95
54_Y57_L1.2010.95
61_E107_T1.1980.95
389_E398_L1.1980.95
272_A366_V1.1940.95
285_I357_K1.1940.95
177_I211_I1.1930.95
67_E71_A1.1710.94
298_A350_Y1.1690.94
300_S347_K1.1650.94
319_A323_E1.1490.94
115_F135_A1.1470.94
70_D73_K1.1440.94
54_Y198_L1.1350.93
444_E447_G1.1350.93
521_K524_D1.1350.93
14_E17_K1.1330.93
131_V134_K1.1330.93
45_A48_S1.1280.93
249_I253_V1.1270.93
50_M88_P1.1240.93
152_N180_Q1.1190.93
386_L389_E1.1140.93
141_S153_S1.1120.93
240_G244_Q1.1060.93
284_D356_H1.1030.92
470_L475_R1.0970.92
109_S141_S1.0960.92
452_A470_L1.0950.92
279_E357_K1.0930.92
277_T361_E1.0920.92
448_I452_A1.0880.92
126_N131_V1.0840.92
16_W28_V1.0830.92
149_G182_Q1.0810.92
254_Q268_V1.0800.92
65_I85_I1.0750.91
280_N360_A1.0710.91
179_L211_I1.0690.91
21_K24_K1.0660.91
247_K250_Q1.0590.91
112_Y138_T1.0580.91
38_G42_S1.0570.91
147_M178_V1.0540.91
20_S24_K1.0530.91
111_D142_N1.0450.90
115_F130_M1.0440.90
493_I496_P1.0440.90
85_I95_L1.0440.90
211_I222_D1.0410.90
139_E154_K1.0410.90
517_M530_R1.0410.90
469_M473_K1.0390.90
290_D353_N1.0380.90
111_D114_F1.0370.90
111_D134_K1.0350.90
407_D412_Q1.0310.90
398_L405_S1.0310.90
136_T159_L1.0310.90
453_Y457_G1.0290.90
310_G339_G1.0210.89
135_A139_E1.0210.89
251_K255_S1.0130.89
26_L30_A1.0090.89
310_G317_G1.0070.89
287_E297_I1.0060.88
483_E488_V0.9970.88
187_L215_D0.9940.88
463_I466_L0.9940.88
279_E359_I0.9900.88
112_Y139_E0.9900.88
451_W454_I0.9890.88
39_I42_S0.9740.87
375_V418_D0.9730.87
132_K136_T0.9680.86
486_Y489_P0.9680.86
368_D412_Q0.9670.86
302_E345_S0.9620.86
322_G325_D0.9580.86
126_N130_M0.9570.86
36_I43_V0.9570.86
385_S388_T0.9540.86
402_V408_K0.9530.86
110_I114_F0.9510.85
138_T142_N0.9510.85
150_I332_D0.9470.85
253_V270_V0.9430.85
115_F178_V0.9430.85
400_T403_R0.9380.85
136_T157_I0.9380.85
157_I160_P0.9310.84
462_A466_L0.9290.84
461_A465_V0.9280.84
112_Y163_A0.9250.84
158_N176_S0.9230.84
22_L26_L0.9220.84
499_N502_E0.9190.83
260_M374_M0.9190.83
455_V459_L0.9180.83
490_Q495_L0.9180.83
375_V398_L0.9120.83
250_Q254_Q0.9110.83
139_E142_N0.9110.83
446_S457_G0.9080.83
468_I472_R0.9080.83
518_A525_F0.9010.82
65_I95_L0.9010.82
320_G327_T0.9000.82
449_P452_A0.8980.82
402_V407_D0.8980.82
60_E64_Q0.8950.82
449_P453_Y0.8920.82
322_G326_V0.8910.82
133_V157_I0.8910.82
150_I245_V0.8870.81
15_F18_N0.8860.81
188_D191_Q0.8850.81
176_S242_K0.8840.81
462_A465_V0.8840.81
484_Y488_V0.8830.81
158_N204_P0.8820.81
404_T417_S0.8800.81
95_L98_Q0.8780.81
396_K402_V0.8770.80
321_T324_E0.8750.80
491_E495_L0.8740.80
407_D423_N0.8740.80
95_L121_F0.8720.80
113_S139_E0.8720.80
273_D368_D0.8710.80
442_T445_S0.8710.80
197_H213_I0.8660.80
141_S145_N0.8630.79
287_E290_D0.8610.79
140_L144_I0.8610.79
53_L95_L0.8590.79
197_H201_K0.8590.79
158_N173_A0.8570.79
473_K476_A0.8560.79
111_D135_A0.8550.79
472_R476_A0.8520.79
211_I374_M0.8510.78
181_I215_D0.8500.78
124_T452_A0.8490.78
309_Q464_I0.8490.78
403_R406_L0.8480.78
112_Y132_K0.8480.78
191_Q202_S0.8470.78
159_L174_S0.8460.78
243_S247_K0.8430.78
187_L191_Q0.8380.77
261_M266_V0.8380.77
250_Q269_S0.8370.77
368_D409_D0.8350.77
524_D528_L0.8340.77
290_D296_G0.8330.77
234_S237_S0.8320.77
304_V343_K0.8300.77
93_D143_L0.8270.76
483_E486_Y0.8230.76
114_F131_V0.8230.76
133_V137_Q0.8180.76
386_L420_D0.8170.76
104_L197_H0.8140.75
194_G220_Y0.8140.75
92_V96_K0.8140.75
288_P353_N0.8110.75
54_Y369_L0.8080.75
412_Q418_D0.8070.75
112_Y142_N0.8070.75
122_G154_K0.8070.75
128_F137_Q0.8060.75
286_V352_V0.8050.74
70_D173_A0.8050.74
65_I133_V0.8040.74
466_L469_M0.8030.74
430_Q434_G0.8030.74
96_K407_D0.8000.74
369_L416_L0.8000.74
484_Y489_P0.7990.74
66_K70_D0.7940.73
290_D297_I0.7900.73
119_A127_E0.7890.73
289_V353_N0.7890.73
457_G464_I0.7880.73
492_P496_P0.7830.72
288_P351_E0.7830.72
87_V92_V0.7820.72
394_I399_S0.7800.72
272_A276_F0.7800.72
78_L82_G0.7800.72
128_F352_V0.7790.72
200_S208_E0.7780.72
246_E252_H0.7780.72
392_D396_K0.7770.72
137_Q156_M0.7770.72
310_G313_A0.7750.72
493_I497_D0.7720.71
54_Y100_A0.7720.71
286_V351_E0.7720.71
458_V492_P0.7690.71
485_E496_P0.7690.71
110_I115_F0.7680.71
15_F24_K0.7680.71
241_I245_V0.7680.71
36_I40_I0.7670.71
407_D414_Q0.7660.71
458_V473_K0.7650.71
289_V296_G0.7630.70
502_E505_T0.7610.70
370_G404_T0.7610.70
511_R515_E0.7610.70
234_S238_Q0.7610.70
41_I44_F0.7600.70
454_I461_A0.7580.70
467_I470_L0.7570.70
512_K516_K0.7570.70
115_F173_A0.7570.70
96_K156_M0.7560.70
254_Q267_V0.7560.70
126_N134_K0.7550.70
372_Q401_V0.7550.70
389_E402_V0.7540.70
55_K84_V0.7530.69
405_S423_N0.7520.69
465_V470_L0.7510.69
395_Q398_L0.7500.69
58_S105_P0.7470.69
203_V206_L0.7470.69
70_D243_S0.7460.69
395_Q411_T0.7420.68
66_K78_L0.7410.68
285_I353_N0.7410.68
131_V138_T0.7410.68
277_T365_K0.7400.68
181_I219_T0.7400.68
228_A264_D0.7400.68
398_L407_D0.7380.68
116_G139_E0.7350.68
457_G461_A0.7350.68
143_L154_K0.7340.68
114_F374_M0.7330.67
207_K306_E0.7320.67
287_E296_G0.7320.67
54_Y105_P0.7310.67
281_R355_I0.7300.67
377_P389_E0.7300.67
134_K139_E0.7300.67
508_S512_K0.7300.67
158_N318_T0.7280.67
125_D129_D0.7270.67
96_K143_L0.7240.66
115_F124_T0.7240.66
392_D395_Q0.7220.66
211_I371_I0.7200.66
289_V376_E0.7200.66
192_I213_I0.7190.66
398_L404_T0.7190.66
514_L518_A0.7180.66
243_S246_E0.7180.66
50_M75_P0.7160.66
452_A456_G0.7160.66
332_D455_V0.7160.66
32_A168_E0.7150.65
76_N132_K0.7130.65
65_I104_L0.7130.65
451_W459_L0.7090.65
414_Q423_N0.7080.65
136_T140_L0.7060.64
218_S221_Y0.7050.64
26_L29_S0.7050.64
526_A529_L0.7040.64
105_P201_K0.7030.64
195_L213_I0.7000.64
389_E394_I0.6980.64
393_D398_L0.6970.64
74_V85_I0.6950.63
457_G463_I0.6940.63
302_E349_N0.6920.63
163_A166_V0.6910.63
112_Y135_A0.6910.63
25_I28_V0.6900.63
490_Q497_D0.6890.63
179_L187_L0.6890.63
482_E486_Y0.6890.63
443_E454_I0.6880.62
97_V147_M0.6880.62
438_L442_T0.6860.62
139_E156_M0.6840.62
50_M86_S0.6820.62
61_E138_T0.6820.62
150_I220_Y0.6810.62
241_I272_A0.6780.61
140_L156_M0.6770.61
27_M31_L0.6760.61
134_K142_N0.6750.61
418_D422_N0.6750.61
491_E496_P0.6750.61
122_G369_L0.6750.61
129_D161_K0.6740.61
494_N497_D0.6730.61
259_T266_V0.6730.61
35_I429_V0.6720.61
19_R22_L0.6710.61
16_W24_K0.6700.60
409_D412_Q0.6700.60
42_S453_Y0.6680.60
61_E220_Y0.6670.60
116_G130_M0.6660.60
162_D166_V0.6650.60
125_D128_F0.6650.60
112_Y133_V0.6630.60
377_P420_D0.6630.60
32_A473_K0.6630.60
271_T372_Q0.6630.60
39_I424_K0.6620.60
29_S236_S0.6620.60
202_S525_F0.6600.59
319_A324_E0.6590.59
51_A92_V0.6590.59
158_N452_A0.6580.59
108_G370_G0.6570.59
77_E344_N0.6560.59
209_D416_L0.6540.59
364_Y518_A0.6530.58
491_E494_N0.6530.58
127_E131_V0.6530.58
233_D236_S0.6520.58
277_T457_G0.6510.58
223_K298_A0.6510.58
140_L202_S0.6510.58
234_S241_I0.6500.58
174_S206_L0.6470.58
375_V468_I0.6470.58
64_Q366_V0.6470.58
180_Q216_Q0.6460.58
434_G445_S0.6430.57
401_V405_S0.6430.57
412_Q423_N0.6420.57
314_A341_Y0.6410.57
320_G522_P0.6410.57
96_K423_N0.6410.57
301_A530_R0.6410.57
112_Y134_K0.6410.57
134_K412_Q0.6390.57
133_V161_K0.6370.57
376_E425_I0.6360.56
265_K377_P0.6360.56
159_L204_P0.6350.56
194_G214_M0.6350.56
281_R357_K0.6340.56
137_Q265_K0.6300.56
157_I174_S0.6300.56
111_D116_G0.6260.55
415_N458_V0.6250.55
148_D217_N0.6230.55
492_P503_N0.6220.55
448_I459_L0.6220.55
492_P495_L0.6220.55
498_I501_E0.6220.55
112_Y120_G0.6210.55
159_L180_Q0.6210.55
133_V158_N0.6200.55
93_D341_Y0.6190.54
347_K351_E0.6180.54
201_K518_A0.6180.54
165_F413_N0.6170.54
277_T359_I0.6170.54
75_P91_Q0.6160.54
416_L520_D0.6150.54
62_A97_V0.6150.54
396_K400_T0.6150.54
134_K414_Q0.6150.54
375_V492_P0.6140.54
320_G324_E0.6140.54
126_N136_T0.6140.54
472_R475_R0.6120.54
247_K369_L0.6120.54
383_T387_S0.6110.54
385_S393_D0.6110.54
110_I113_S0.6110.54
256_L283_E0.6080.53
89_E181_I0.6080.53
299_V347_K0.6070.53
487_E491_E0.6050.53
87_V94_S0.6050.53
391_Q450_L0.6050.53
434_G437_N0.6040.53
122_G528_L0.6010.52
290_D298_A0.6000.52
192_I214_M0.5980.52
451_W465_V0.5980.52
150_I325_D0.5980.52
130_M135_A0.5970.52
115_F127_E0.5970.52
383_T386_L0.5970.52
143_L264_D0.5960.52
183_P533_L0.5960.52
449_P457_G0.5960.52
399_S416_L0.5950.52
262_G265_K0.5950.52
250_Q270_V0.5940.51
23_Q528_L0.5920.51
246_E406_L0.5920.51
128_F269_S0.5900.51
103_G112_Y0.5880.51
112_Y137_Q0.5880.51
283_E353_N0.5870.51
186_T190_S0.5860.51
30_A179_L0.5850.50
486_Y494_N0.5850.50
19_R23_Q0.5820.50
203_V356_H0.5820.50
508_S515_E0.5820.50
23_Q160_P0.5810.50
79_S84_V0.5810.50
91_Q210_N0.5810.50
501_E504_E0.5810.50
39_I46_S0.5790.50
321_T327_T0.5790.50
488_V492_P0.5790.50
192_I508_S0.5790.50
267_V532_W0.5780.50
100_A143_L0.5780.50
307_T340_N0.5780.50
201_K204_P0.5780.50
156_M369_L0.5770.49
524_D529_L0.5770.49
361_E365_K0.5740.49
96_K139_E0.5740.49
19_R27_M0.5730.49
246_E275_D0.5720.49
288_P350_Y0.5710.49
97_V104_L0.5710.49
160_P173_A0.5700.49
109_S151_K0.5700.49
378_P387_S0.5700.49
371_I509_V0.5700.49
115_F269_S0.5690.48
469_M475_R0.5690.48
521_K528_L0.5680.48
258_G263_Q0.5680.48
123_L127_E0.5680.48
213_I251_K0.5680.48
410_E416_L0.5670.48
499_N503_N0.5670.48
319_A326_V0.5670.48
453_Y464_I0.5670.48
320_G326_V0.5660.48
11_K15_F0.5660.48
125_D192_I0.5660.48
457_G470_L0.5660.48
61_E111_D0.5650.48
115_F128_F0.5630.48
148_D182_Q0.5620.48
158_N174_S0.5600.47
259_T268_V0.5590.47
200_S324_E0.5590.47
469_M472_R0.5590.47
111_D156_M0.5590.47
53_L69_L0.5580.47
213_I222_D0.5580.47
206_L210_N0.5580.47
179_L289_V0.5560.47
158_N165_F0.5550.47
79_S502_E0.5550.47
196_Y276_F0.5550.47
243_S248_D0.5540.47
42_S45_A0.5530.47
465_V468_I0.5530.47
156_M202_S0.5520.46
256_L265_K0.5510.46
124_T521_K0.5510.46
509_V514_L0.5490.46
18_N34_I0.5490.46
482_E485_E0.5490.46
477_Q482_E0.5490.46
130_M136_T0.5490.46
391_Q399_S0.5470.46
385_S418_D0.5470.46
112_Y130_M0.5470.46
485_E488_V0.5470.46
28_V32_A0.5460.46
222_D225_D0.5460.46
309_Q340_N0.5460.46
187_L192_I0.5440.46
66_K95_L0.5430.45
133_V236_S0.5430.45
488_V491_E0.5420.45
216_Q266_V0.5410.45
149_G191_Q0.5390.45
405_S417_S0.5390.45
388_T420_D0.5390.45
367_R451_W0.5370.45
413_N421_I0.5370.45
446_S450_L0.5360.45
523_E533_L0.5350.44
113_S156_M0.5350.44
107_T112_Y0.5350.44
128_F286_V0.5340.44
132_K139_E0.5340.44
389_E420_D0.5340.44
332_D335_N0.5340.44
481_F490_Q0.5330.44
275_D362_S0.5330.44
56_D70_D0.5330.44
518_A527_K0.5320.44
326_V470_L0.5310.44
414_Q418_D0.5310.44
143_L146_E0.5310.44
30_A506_A0.5300.44
259_T371_I0.5290.44
137_Q256_L0.5290.44
425_I428_S0.5290.44
519_K523_E0.5280.44
91_Q95_L0.5280.44
176_S198_L0.5280.44
490_Q498_I0.5260.43
111_D407_D0.5250.43
64_Q229_G0.5250.43
280_N526_A0.5250.43
302_E372_Q0.5240.43
181_I350_Y0.5240.43
320_G528_L0.5230.43
251_K254_Q0.5220.43
478_E482_E0.5220.43
44_F452_A0.5220.43
237_S249_I0.5210.43
177_I501_E0.5210.43
112_Y202_S0.5190.43
74_V153_S0.5180.42
443_E447_G0.5180.42
334_E338_S0.5180.42
483_E487_E0.5160.42
264_D343_K0.5160.42
438_L447_G0.5160.42
41_I456_G0.5150.42
113_S154_K0.5150.42
78_L255_S0.5140.42
97_V213_I0.5140.42
190_S194_G0.5140.42
124_T528_L0.5140.42
53_L65_I0.5130.42
105_P212_V0.5130.42
455_V462_A0.5130.42
108_G131_V0.5130.42
57_L105_P0.5120.42
472_R477_Q0.5120.42
164_V192_I0.5120.42
182_Q240_G0.5110.42
353_N517_M0.5110.42
78_L97_V0.5110.42
192_I216_Q0.5110.42
202_S272_A0.5110.42
244_Q248_D0.5090.41
137_Q201_K0.5090.41
287_E355_I0.5080.41
39_I479_D0.5080.41
143_L407_D0.5080.41
189_Q193_N0.5080.41
24_K120_G0.5080.41
67_E275_D0.5070.41
320_G329_Y0.5070.41
55_K92_V0.5070.41
222_D296_G0.5070.41
327_T507_E0.5070.41
97_V212_V0.5060.41
484_Y487_E0.5060.41
501_E505_T0.5060.41
389_E407_D0.5050.41
81_G93_D0.5050.41
484_Y494_N0.5050.41
522_P526_A0.5050.41
142_N156_M0.5050.41
442_T446_S0.5050.41
111_D412_Q0.5050.41
321_T326_V0.5040.41
206_L420_D0.5040.41
160_P169_E0.5040.41
146_E269_S0.5030.41
229_G244_Q0.5030.41
465_V520_D0.5030.41
459_L534_A0.5030.41
328_N482_E0.5030.41
241_I374_M0.5030.41
188_D367_R0.5020.41
450_L458_V0.5020.41
121_F350_Y0.5010.40
319_A322_G0.5010.40
143_L266_V0.5010.40
368_D414_Q0.5000.40
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3j6da 3 0.2705 100 0.632 Contact Map
2y9jY 3 0.3078 100 0.642 Contact Map
1yj7A 3 0.2817 100 0.648 Contact Map
4oycA 1 0.1679 100 0.765 Contact Map
4w4mA 1 0.1138 99.8 0.863 Contact Map
2hfvA 1 0.1586 71.6 0.97 Contact Map
2rddB 1 0.069 55.6 0.973 Contact Map
2kncA 1 0.097 54.3 0.973 Contact Map
2kogA 1 0.0784 50.5 0.974 Contact Map
4q2lA 1 0.1082 48.1 0.974 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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