FLII - BACSU - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

FLII - Flagellum-specific ATP synthase

UniProt:	P23445	Sequences: MKTQSLIDCIEMTDSYKRYGKVKRVIGLMIESKGPASSIGDLCLIYAKGQSGKVIKAEVVGFQEENILLMPYLEAASIAPGSIVEATGESLRVKVGTGLIGQVIDAFGEPLDGKLLPKGLSPVSTEQSPPNPMKRPPIREKMGVGVRSIDSLLTVGKGQRIGIFAGSGVGKSTLMGMIAKQTEADLNVIALVGERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMFMMDSVTRVAMAQREIGLAAGEPPTTKGYTPSVFAILPRLLERTGANEHGTITAFYTVLVDGDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNVLKSISRVMSNISTKQHLDAANKFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQLIQFLKQGTDEPALLEESIAALTSLTGNEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	438 (410)
Sequences:	7211 (2688)
Seq/√Len:	132.8

ECOLI - FLII ATPB ATPA RHO
BACSU - FLII ATPA ATPB RHO
HALSA - VATB VATA
SULSO - VATB VATA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
105_D	109_E	7.769	1.00
157_K	249_N	4.803	1.00
190_A	236_A	4.502	1.00
335_D	348_N	4.203	1.00
32_S	69_L	3.674	1.00
148_S	347_V	3.424	1.00
41_D	86_A	3.220	1.00
372_F	409_L	3.218	1.00
43_C	69_L	2.855	1.00
102_Q	112_D	2.803	1.00
422_L	425_E	2.771	1.00
37_S	59_V	2.711	1.00
89_E	92_R	2.598	1.00
188_V	240_A	2.548	1.00
44_L	54_V	2.533	1.00
97_T	246_K	2.519	1.00
237_T	307_Y	2.512	1.00
57_A	69_L	2.512	1.00
43_C	84_V	2.486	1.00
97_T	248_Q	2.481	1.00
44_L	85_E	2.456	1.00
140_E	157_K	2.455	1.00
155_V	306_F	2.398	1.00
361_S	366_L	2.323	1.00
209_K	213_K	2.298	1.00
98_G	120_L	2.284	1.00
240_A	303_I	2.281	1.00
92_R	122_P	2.270	1.00
104_I	239_I	2.250	1.00
147_R	421_A	2.238	1.00
173_T	417_T	2.215	1.00
218_V	239_I	2.214	1.00
371_K	374_E	2.205	1.00
380_Q	383_E	2.169	1.00
32_S	84_V	2.161	1.00
200_R	204_E	2.086	1.00
338_L	343_Q	2.066	1.00
316_M	333_V	2.050	1.00
31_E	66_N	2.046	1.00
363_K	367_D	2.043	1.00
152_L	372_F	2.023	1.00
123_V	127_Q	2.006	1.00
406_Y	410_I	1.987	1.00
24_R	31_E	1.973	1.00
371_K	401_E	1.969	1.00
22_V	78_I	1.924	1.00
45_I	57_A	1.915	1.00
241_E	294_R	1.909	1.00
38_S	41_D	1.895	1.00
19_Y	83_I	1.878	1.00
210_E	213_K	1.855	1.00
386_I	403_I	1.821	1.00
41_D	88_G	1.817	1.00
155_V	332_I	1.807	1.00
343_Q	414_K	1.795	1.00
151_S	412_F	1.789	1.00
151_S	426_S	1.771	1.00
23_K	33_K	1.770	1.00
383_E	387_N	1.765	1.00
242_Y	246_K	1.751	1.00
166_G	169_V	1.743	1.00
18_R	86_A	1.702	1.00
343_Q	410_I	1.701	1.00
216_I	239_I	1.699	1.00
204_E	208_G	1.697	1.00
203_I	217_V	1.685	1.00
123_V	242_Y	1.683	1.00
342_G	370_N	1.683	1.00
123_V	238_A	1.677	1.00
143_G	150_D	1.668	1.00
341_K	410_I	1.647	1.00
204_E	207_L	1.645	1.00
309_V	324_V	1.634	1.00
46_Y	83_I	1.612	1.00
188_V	239_I	1.594	1.00
378_T	399_I	1.593	1.00
114_K	207_L	1.587	1.00
368_A	431_T	1.578	1.00
140_E	297_A	1.568	1.00
44_L	56_K	1.560	1.00
249_N	302_T	1.510	1.00
102_Q	115_L	1.499	1.00
154_T	357_M	1.498	1.00
46_Y	54_V	1.484	1.00
97_T	242_Y	1.481	1.00
98_G	118_K	1.458	1.00
162_G	328_L	1.451	1.00
102_Q	114_K	1.448	1.00
46_Y	85_E	1.435	1.00
357_M	369_A	1.430	1.00
93_V	239_I	1.429	1.00
91_L	125_T	1.425	1.00
22_V	82_S	1.416	1.00
149_I	332_I	1.413	1.00
104_I	218_V	1.407	1.00
318_E	321_A	1.401	1.00
416_G	419_E	1.398	1.00
404_Q	407_P	1.396	1.00
110_P	115_L	1.394	1.00
192_V	232_A	1.394	1.00
190_A	254_M	1.389	1.00
341_K	383_E	1.384	1.00
205_K	359_N	1.384	1.00
32_S	35_P	1.382	1.00
393_R	404_Q	1.379	1.00
99_L	239_I	1.353	1.00
401_E	405_F	1.347	1.00
43_C	57_A	1.347	1.00
21_K	83_I	1.346	1.00
17_K	85_E	1.344	1.00
98_G	119_G	1.338	1.00
89_E	122_P	1.338	1.00
233_A	291_L	1.335	1.00
102_Q	110_P	1.331	1.00
378_T	381_N	1.324	1.00
237_T	295_T	1.315	1.00
425_E	429_A	1.308	1.00
37_S	43_C	1.303	1.00
44_L	87_T	1.302	1.00
37_S	67_I	1.298	1.00
93_V	235_T	1.294	1.00
186_L	243_F	1.293	1.00
75_A	78_I	1.291	1.00
25_V	78_I	1.288	1.00
105_D	224_Q	1.287	1.00
149_I	178_I	1.286	1.00
258_T	262_M	1.283	1.00
186_L	248_Q	1.282	1.00
224_Q	228_M	1.281	1.00
119_G	122_P	1.272	1.00
292_L	327_I	1.270	1.00
411_Q	414_K	1.269	1.00
358_S	366_L	1.267	1.00
144_V	155_V	1.265	1.00
191_L	199_V	1.260	1.00
250_V	303_I	1.259	1.00
94_K	122_P	1.258	1.00
382_S	399_I	1.241	1.00
337_A	340_N	1.240	1.00
288_L	324_V	1.235	1.00
264_Q	287_I	1.233	1.00
208_G	211_G	1.233	1.00
55_I	73_L	1.233	1.00
370_N	373_R	1.224	1.00
123_V	245_D	1.221	1.00
23_K	66_N	1.221	1.00
134_K	299_E	1.218	1.00
138_I	156_G	1.218	1.00
187_N	248_Q	1.210	1.00
173_T	418_D	1.209	1.00
362_T	423_L	1.208	1.00
21_K	33_K	1.205	1.00
153_L	332_I	1.201	0.99
56_K	109_E	1.194	0.99
47_A	55_I	1.193	0.99
207_L	212_L	1.192	0.99
247_G	300_H	1.192	0.99
31_E	63_Q	1.178	0.99
103_V	203_I	1.176	0.99
30_I	57_A	1.175	0.99
408_Q	411_Q	1.168	0.99
33_K	66_N	1.165	0.99
161_I	306_F	1.155	0.99
47_A	53_K	1.144	0.99
141_K	360_I	1.136	0.99
237_T	303_I	1.128	0.99
366_L	370_N	1.125	0.99
257_V	324_V	1.123	0.99
356_V	360_I	1.121	0.99
100_I	216_I	1.113	0.99
79_A	82_S	1.111	0.99
371_K	375_L	1.111	0.99
268_G	276_T	1.110	0.99
185_D	249_N	1.107	0.99
96_G	99_L	1.100	0.99
106_A	235_T	1.098	0.99
343_Q	413_L	1.089	0.99
142_M	186_L	1.085	0.99
155_V	304_T	1.083	0.99
292_L	324_V	1.078	0.99
351_K	380_Q	1.077	0.99
183_E	249_N	1.074	0.99
146_V	149_I	1.058	0.99
63_Q	68_L	1.055	0.99
94_K	119_G	1.050	0.99
190_A	252_F	1.045	0.99
196_G	221_T	1.044	0.99
348_N	351_K	1.041	0.99
32_S	43_C	1.038	0.99
102_Q	111_L	1.034	0.98
127_Q	245_D	1.030	0.98
146_V	174_L	1.027	0.98
314_D	317_N	1.025	0.98
179_A	215_S	1.019	0.98
338_L	414_K	1.018	0.98
166_G	336_R	1.017	0.98
362_T	365_H	1.013	0.98
112_D	115_L	1.010	0.98
404_Q	408_Q	1.007	0.98
314_D	336_R	1.004	0.98
73_L	228_M	1.001	0.98
143_G	423_L	0.997	0.98
192_V	254_M	0.996	0.98
144_V	306_F	0.996	0.98
71_P	75_A	0.995	0.98
46_Y	82_S	0.990	0.98
136_P	139_R	0.987	0.98
311_V	318_E	0.986	0.98
340_N	351_K	0.979	0.98
321_A	333_V	0.977	0.98
45_I	82_S	0.976	0.98
179_A	253_M	0.975	0.98
288_L	327_I	0.975	0.98
311_V	321_A	0.974	0.98
421_A	429_A	0.968	0.98
257_V	292_L	0.965	0.98
236_A	252_F	0.965	0.98
102_Q	117_P	0.959	0.98
134_K	298_N	0.950	0.97
155_V	161_I	0.950	0.97
382_S	386_I	0.946	0.97
211_G	215_S	0.945	0.97
244_R	250_V	0.945	0.97
109_E	116_L	0.941	0.97
365_H	427_I	0.941	0.97
99_L	216_I	0.939	0.97
144_V	150_D	0.936	0.97
106_A	111_L	0.935	0.97
234_Y	287_I	0.935	0.97
106_A	228_M	0.930	0.97
337_A	380_Q	0.929	0.97
216_I	243_F	0.928	0.97
246_K	250_V	0.925	0.97
195_R	198_E	0.922	0.97
185_D	248_Q	0.921	0.97
229_R	266_E	0.918	0.97
365_H	423_L	0.916	0.97
47_A	54_V	0.913	0.97
262_M	312_D	0.909	0.97
161_I	330_G	0.906	0.97
148_S	413_L	0.902	0.96
396_S	400_D	0.902	0.96
99_L	104_I	0.901	0.96
288_L	323_T	0.900	0.96
121_S	242_Y	0.900	0.96
166_G	322_D	0.899	0.96
166_G	314_D	0.897	0.96
93_V	96_G	0.892	0.96
192_V	233_A	0.891	0.96
194_E	198_E	0.891	0.96
121_S	246_K	0.891	0.96
297_A	302_T	0.886	0.96
316_M	351_K	0.886	0.96
42_L	56_K	0.879	0.96
41_D	90_S	0.879	0.96
201_E	359_N	0.878	0.96
154_T	423_L	0.878	0.96
179_A	189_I	0.877	0.96
379_Y	406_Y	0.876	0.96
251_M	306_F	0.872	0.96
387_N	396_S	0.869	0.96
131_N	134_K	0.864	0.95
357_M	361_S	0.862	0.95
237_T	252_F	0.861	0.95
286_A	289_P	0.860	0.95
42_L	87_T	0.860	0.95
106_A	224_Q	0.859	0.95
29_M	271_A	0.858	0.95
136_P	298_N	0.856	0.95
368_A	427_I	0.855	0.95
203_I	207_L	0.853	0.95
401_E	404_Q	0.852	0.95
361_S	369_A	0.849	0.95
295_T	305_A	0.848	0.95
211_G	214_R	0.848	0.95
41_D	150_D	0.848	0.95
242_Y	245_D	0.844	0.95
357_M	365_H	0.841	0.95
186_L	214_R	0.841	0.95
175_M	202_F	0.841	0.95
88_G	91_L	0.840	0.95
260_V	291_L	0.838	0.95
73_L	109_E	0.833	0.94
149_I	153_L	0.832	0.94
30_I	45_I	0.832	0.94
141_K	154_T	0.832	0.94
374_E	414_K	0.829	0.94
316_M	321_A	0.828	0.94
378_T	382_S	0.826	0.94
374_E	378_T	0.826	0.94
358_S	373_R	0.825	0.94
151_S	430_L	0.815	0.94
19_Y	85_E	0.812	0.94
330_G	355_R	0.812	0.94
58_E	72_Y	0.806	0.93
117_P	120_L	0.806	0.93
256_S	308_T	0.805	0.93
136_P	300_H	0.804	0.93
262_M	280_Y	0.803	0.93
91_L	231_K	0.802	0.93
136_P	297_A	0.800	0.93
104_I	117_P	0.799	0.93
333_V	336_R	0.799	0.93
421_A	427_I	0.796	0.93
156_G	356_V	0.794	0.93
315_D	322_D	0.792	0.93
166_G	315_D	0.791	0.93
364_Q	431_T	0.790	0.93
104_I	107_F	0.790	0.93
62_F	80_P	0.789	0.93
114_K	117_P	0.786	0.93
367_D	371_K	0.785	0.92
124_S	127_Q	0.783	0.92
253_M	308_T	0.781	0.92
179_A	214_R	0.778	0.92
421_A	426_S	0.777	0.92
423_L	427_I	0.775	0.92
100_I	103_V	0.772	0.92
140_E	249_N	0.770	0.92
97_T	243_F	0.766	0.92
187_N	253_M	0.763	0.91
187_N	216_I	0.762	0.91
152_L	369_A	0.761	0.91
22_V	30_I	0.760	0.91
143_G	430_L	0.758	0.91
188_V	216_I	0.756	0.91
284_V	287_I	0.755	0.91
95_V	238_A	0.753	0.91
150_D	426_S	0.753	0.91
58_E	231_K	0.749	0.91
29_M	68_L	0.749	0.91
25_V	125_T	0.747	0.91
234_Y	260_V	0.745	0.90
72_Y	228_M	0.743	0.90
261_A	288_L	0.743	0.90
125_T	235_T	0.743	0.90
157_K	302_T	0.741	0.90
194_E	259_R	0.739	0.90
91_L	150_D	0.738	0.90
164_F	321_A	0.737	0.90
260_V	287_I	0.737	0.90
254_M	291_L	0.735	0.90
361_S	427_I	0.735	0.90
142_M	182_T	0.734	0.90
235_T	238_A	0.733	0.90
92_R	124_S	0.732	0.90
195_R	259_R	0.731	0.90
356_V	361_S	0.730	0.90
376_L	380_Q	0.730	0.90
213_K	216_I	0.727	0.89
63_Q	66_N	0.726	0.89
393_R	403_I	0.726	0.89
34_G	37_S	0.725	0.89
154_T	361_S	0.724	0.89
102_Q	116_L	0.721	0.89
368_A	430_L	0.719	0.89
313_G	318_E	0.715	0.89
43_C	59_V	0.715	0.89
26_I	388_I	0.713	0.88
262_M	323_T	0.711	0.88
41_D	87_T	0.711	0.88
333_V	351_K	0.710	0.88
187_N	190_A	0.710	0.88
128_S	290_R	0.707	0.88
62_F	67_I	0.707	0.88
375_L	409_L	0.706	0.88
220_A	224_Q	0.706	0.88
376_L	409_L	0.705	0.88
58_E	91_L	0.705	0.88
365_H	369_A	0.704	0.88
391_Y	400_D	0.702	0.88
384_D	390_A	0.702	0.88
178_I	251_M	0.700	0.87
424_E	428_A	0.700	0.87
94_K	120_L	0.697	0.87
230_L	264_Q	0.695	0.87
384_D	387_N	0.693	0.87
232_A	236_A	0.693	0.87
322_D	325_R	0.688	0.87
239_I	243_F	0.687	0.86
57_A	70_M	0.687	0.86
249_N	297_A	0.686	0.86
167_S	327_I	0.686	0.86
154_T	365_H	0.686	0.86
110_P	117_P	0.685	0.86
32_S	57_A	0.685	0.86
103_V	106_A	0.684	0.86
73_L	225_P	0.684	0.86
199_V	219_V	0.682	0.86
137_P	359_N	0.682	0.86
144_V	149_I	0.682	0.86
383_E	410_I	0.681	0.86
230_L	267_I	0.681	0.86
252_F	295_T	0.681	0.86
280_Y	315_D	0.680	0.86
153_L	353_I	0.678	0.86
156_G	355_R	0.677	0.86
118_K	121_S	0.676	0.86
375_L	401_E	0.676	0.86
363_K	416_G	0.675	0.86
277_T	323_T	0.675	0.86
175_M	253_M	0.675	0.86
161_I	332_I	0.671	0.85
47_A	82_S	0.670	0.85
143_G	183_E	0.669	0.85
68_L	71_P	0.667	0.85
179_A	187_N	0.666	0.85
103_V	111_L	0.665	0.85
335_D	351_K	0.665	0.85
367_D	370_N	0.664	0.85
250_V	266_E	0.663	0.85
122_P	401_E	0.663	0.85
166_G	279_G	0.661	0.84
100_I	248_Q	0.661	0.84
37_S	86_A	0.660	0.84
45_I	84_V	0.659	0.84
26_I	29_M	0.658	0.84
220_A	229_R	0.658	0.84
241_E	244_R	0.656	0.84
100_I	212_L	0.655	0.84
91_L	235_T	0.653	0.84
62_F	68_L	0.653	0.84
98_G	121_S	0.652	0.84
405_F	408_Q	0.651	0.83
379_Y	383_E	0.651	0.83
418_D	429_A	0.649	0.83
107_F	110_P	0.645	0.83
142_M	155_V	0.644	0.83
105_D	111_L	0.642	0.83
184_A	214_R	0.640	0.82
171_K	255_D	0.640	0.82
176_G	219_V	0.639	0.82
187_N	215_S	0.634	0.82
42_L	91_L	0.634	0.82
261_A	320_I	0.633	0.82
421_A	425_E	0.633	0.82
151_S	154_T	0.631	0.81
67_I	84_V	0.631	0.81
412_F	429_A	0.630	0.81
233_A	254_M	0.630	0.81
237_T	254_M	0.629	0.81
273_E	283_S	0.626	0.81
156_G	360_I	0.624	0.81
170_G	255_D	0.624	0.81
208_G	212_L	0.623	0.81
111_L	116_L	0.623	0.81
30_I	75_A	0.620	0.80
244_R	303_I	0.620	0.80
273_E	296_G	0.619	0.80
167_S	325_R	0.616	0.80
112_D	117_P	0.616	0.80
238_A	242_Y	0.615	0.80
74_E	77_S	0.613	0.80
392_K	395_S	0.611	0.79
144_V	295_T	0.610	0.79
225_P	228_M	0.609	0.79
110_P	116_L	0.609	0.79
364_Q	368_A	0.608	0.79
149_I	174_L	0.607	0.79
361_S	365_H	0.607	0.79
317_N	324_V	0.605	0.79
37_S	42_L	0.605	0.79
17_K	54_V	0.604	0.79
206_D	211_G	0.603	0.78
90_S	124_S	0.603	0.78
138_I	356_V	0.603	0.78
425_E	428_A	0.603	0.78
70_M	267_I	0.603	0.78
188_V	218_V	0.602	0.78
180_K	418_D	0.601	0.78
100_I	186_L	0.601	0.78
141_K	356_V	0.601	0.78
55_I	77_S	0.600	0.78
146_V	417_T	0.600	0.78
189_I	199_V	0.598	0.78
394_G	401_E	0.598	0.78
426_S	429_A	0.598	0.78
167_S	326_G	0.597	0.78
362_T	427_I	0.597	0.78
55_I	74_E	0.594	0.77
111_L	224_Q	0.594	0.77
153_L	347_V	0.591	0.77
124_S	238_A	0.590	0.77
143_G	426_S	0.589	0.77
326_G	353_I	0.588	0.77
229_R	241_E	0.587	0.77
399_I	403_I	0.587	0.77
119_G	242_Y	0.587	0.77
169_V	336_R	0.586	0.77
164_F	328_L	0.586	0.77
167_S	262_M	0.585	0.76
379_Y	410_I	0.582	0.76
407_P	410_I	0.581	0.76
375_L	405_F	0.581	0.76
382_S	387_N	0.581	0.76
109_E	122_P	0.581	0.76
104_I	235_T	0.580	0.76
87_T	90_S	0.579	0.76
104_I	108_G	0.578	0.76
375_L	402_A	0.574	0.75
277_T	399_I	0.574	0.75
101_G	106_A	0.573	0.75
386_I	399_I	0.573	0.75
349_V	376_L	0.572	0.75
178_I	306_F	0.571	0.75
144_V	164_F	0.571	0.75
429_A	432_S	0.570	0.75
205_K	238_A	0.569	0.74
389_G	394_G	0.569	0.74
391_Y	394_G	0.569	0.74
163_I	332_I	0.569	0.74
136_P	299_E	0.568	0.74
383_E	403_I	0.568	0.74
22_V	25_V	0.568	0.74
362_T	431_T	0.567	0.74
274_P	282_P	0.567	0.74
97_T	116_L	0.567	0.74
372_F	430_L	0.565	0.74
237_T	240_A	0.565	0.74
33_K	65_E	0.564	0.74
147_R	429_A	0.560	0.73
148_S	349_V	0.557	0.73
63_Q	67_I	0.555	0.73
163_I	334_L	0.555	0.73
114_K	212_L	0.554	0.72
54_V	85_E	0.553	0.72
265_R	320_I	0.553	0.72
403_I	407_P	0.552	0.72
77_S	81_G	0.551	0.72
306_F	342_G	0.550	0.72
106_A	109_E	0.550	0.72
139_R	297_A	0.549	0.72
204_E	209_K	0.547	0.72
55_I	225_P	0.547	0.72
61_G	68_L	0.546	0.71
260_V	264_Q	0.546	0.71
110_P	114_K	0.545	0.71
428_A	432_S	0.544	0.71
85_E	89_E	0.544	0.71
102_Q	106_A	0.544	0.71
230_L	287_I	0.543	0.71
165_A	169_V	0.543	0.71
18_R	36_A	0.543	0.71
98_G	115_L	0.542	0.71
141_K	423_L	0.542	0.71
416_G	420_P	0.541	0.71
209_K	217_V	0.541	0.71
166_G	311_V	0.540	0.71
111_L	219_V	0.540	0.71
94_K	109_E	0.538	0.70
262_M	390_A	0.538	0.70
358_S	417_T	0.538	0.70
58_E	198_E	0.537	0.70
172_S	255_D	0.536	0.70
336_R	340_N	0.535	0.70
368_A	371_K	0.534	0.70
95_V	99_L	0.533	0.70
126_E	234_Y	0.533	0.70
191_L	194_E	0.533	0.70
163_I	306_F	0.532	0.69
313_G	322_D	0.529	0.69
395_S	403_I	0.529	0.69
348_N	380_Q	0.529	0.69
32_S	67_I	0.529	0.69
55_I	78_I	0.528	0.69
350_L	376_L	0.527	0.69
323_T	390_A	0.527	0.69
25_V	30_I	0.526	0.69
98_G	117_P	0.525	0.68
38_S	79_A	0.525	0.68
17_K	47_A	0.522	0.68
395_S	399_I	0.520	0.68
185_D	214_R	0.520	0.68
234_Y	264_Q	0.519	0.68
34_G	179_A	0.519	0.68
264_Q	267_I	0.518	0.67
257_V	291_L	0.518	0.67
312_D	317_N	0.517	0.67
329_D	355_R	0.517	0.67
93_V	99_L	0.517	0.67
326_G	331_H	0.517	0.67
266_E	280_Y	0.516	0.67
394_G	400_D	0.516	0.67
159_Q	355_R	0.515	0.67
207_L	213_K	0.514	0.67
234_Y	271_A	0.514	0.67
127_Q	241_E	0.513	0.67
146_V	177_M	0.513	0.67
103_V	219_V	0.513	0.67
41_D	91_L	0.512	0.67
180_K	203_I	0.512	0.67
129_P	257_V	0.508	0.66
126_E	290_R	0.508	0.66
376_L	406_Y	0.508	0.66
274_P	286_A	0.507	0.66
180_K	214_R	0.507	0.66
212_L	217_V	0.507	0.66
73_L	212_L	0.507	0.66
220_A	228_M	0.506	0.66
116_L	120_L	0.506	0.66
338_L	341_K	0.505	0.65
207_L	215_S	0.504	0.65
198_E	201_E	0.504	0.65
187_N	250_V	0.504	0.65
419_E	423_L	0.503	0.65
94_K	99_L	0.503	0.65
428_A	431_T	0.503	0.65
190_A	305_A	0.502	0.65
154_T	353_I	0.502	0.65
244_R	249_N	0.501	0.65
101_G	108_G	0.501	0.65
375_L	378_T	0.501	0.65
134_K	205_K	0.501	0.65
168_G	266_E	0.500	0.65
43_C	67_I	0.500	0.65

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3oaaA	2	0.9475	100	0.092	Contact Map
2qe7A	1	0.9406	100	0.095	Contact Map
1fx0A	1	0.9475	100	0.111	Contact Map
2c61A	2	0.9064	100	0.112	Contact Map
3vr4D	1	0.9543	100	0.113	Contact Map
3gqbB	1	0.9566	100	0.114	Contact Map
2ck3A	1	0.9475	100	0.116	Contact Map
2r9vA	1	0.9658	100	0.116	Contact Map
3j9tA	1	0.9429	100	0.116	Contact Map
3mfyA	1	0.7785	100	0.122	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0122 seconds.