GREMLIN Database
ODO1 - 2-oxoglutarate dehydrogenase E1 component
UniProt: P23129 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 944 (891)
Sequences: 2244 (1162)
Seq/√Len: 38.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
738_I783_M5.1901.00
121_K140_L5.1651.00
823_T849_W4.9171.00
753_A764_I4.7771.00
669_L720_M4.6671.00
706_S750_W4.3331.00
425_V438_A4.2341.00
256_A266_I4.1971.00
676_N716_S4.1771.00
393_I414_S4.1461.00
694_A741_F4.0651.00
826_V882_V4.0051.00
561_L606_A3.8291.00
701_F720_M3.8241.00
839_H845_D3.7841.00
166_E451_K3.5721.00
745_A750_W3.4991.00
247_A394_A3.4461.00
617_L658_V3.4041.00
869_L872_K3.4021.00
220_L459_G3.3621.00
811_E869_L3.3131.00
173_K444_E3.3081.00
832_V835_D3.2661.00
188_L499_E3.2531.00
425_V453_F3.2491.00
223_L394_A3.2461.00
573_N638_E3.1741.00
504_E508_Q3.1351.00
247_A360_I3.0791.00
480_D638_E3.0331.00
304_E314_R3.0141.00
154_I438_A2.9651.00
240_T354_K2.9301.00
326_F704_F2.9231.00
494_E498_K2.8921.00
185_A189_S2.8851.00
353_T450_N2.8441.00
745_A752_V2.8041.00
932_Q936_V2.7901.00
648_H653_S2.7761.00
553_I607_S2.7711.00
824_R878_E2.7341.00
486_P494_E2.7081.00
821_K848_E2.6431.00
623_E660_N2.6321.00
738_I891_A2.6281.00
555_F559_R2.6201.00
156_F174_I2.5551.00
509_N513_S2.5441.00
934_R938_D2.5421.00
153_T431_D2.5101.00
429_A459_G2.4791.00
332_E386_V2.4771.00
825_L876_L2.4701.00
764_I782_I2.4571.00
166_E445_Y2.4491.00
855_I858_L2.4411.00
490_Q494_E2.4341.00
165_K448_T2.4321.00
705_I720_M2.4111.00
199_E487_T2.4091.00
618_T668_V2.4071.00
230_I390_I2.3881.00
233_Q444_E2.3821.00
855_I895_I2.3731.00
371_I666_G2.3591.00
839_H842_K2.3451.00
818_D821_K2.3361.00
828_S832_V2.3351.00
758_A795_V2.3291.00
738_I829_S2.3141.00
508_Q512_K2.2991.00
925_P929_K2.2791.00
827_L866_V2.2701.00
819_Y872_K2.2701.00
557_V610_K2.2631.00
825_L870_F2.2551.00
850_L940_L2.2410.99
826_V939_S2.2340.99
326_F700_Y2.2230.99
751_T774_R2.2160.99
611_D770_K2.2100.99
431_D434_A2.2060.99
826_V852_I2.2040.99
328_N359_L2.2030.99
721_L782_I2.1970.99
561_L607_S2.1820.99
227_L254_V2.1760.99
378_L662_P2.1690.99
226_V439_V2.1440.99
226_V392_I2.1140.99
838_D842_K2.1030.99
696_A699_V2.0740.99
138_N141_E2.0740.99
832_V882_V2.0730.99
933_E937_S2.0620.99
196_T489_K2.0580.99
670_G700_Y2.0540.99
753_A782_I2.0370.99
473_T628_A2.0160.99
613_T769_A1.9960.99
832_V935_I1.9870.99
614_P654_T1.9770.99
94_S153_T1.9690.99
433_E492_F1.9680.99
30_Y46_D1.9650.99
326_F666_G1.9530.99
226_V435_C1.9510.99
744_L750_W1.9220.98
808_P865_G1.9200.98
839_H940_L1.9190.98
335_T357_A1.9180.98
227_L360_I1.9140.98
720_M781_V1.9130.98
793_N841_N1.9120.98
861_F895_I1.9060.98
709_R778_R1.8990.98
807_Q810_Y1.8930.98
417_A454_L1.8890.98
836_I852_I1.8860.98
503_T506_V1.8660.98
736_G783_M1.8360.98
366_F454_L1.8310.98
187_K440_K1.8270.98
787_S831_K1.8070.98
364_A399_G1.8050.98
685_L721_L1.8010.98
495_K499_E1.8010.98
170_L425_V1.7910.97
124_P139_G1.7800.97
932_Q935_I1.7800.97
553_I558_L1.7680.97
812_Q815_L1.7670.97
752_V783_M1.7550.97
163_D166_E1.7550.97
755_L764_I1.7450.97
878_E910_Q1.7440.97
29_Q36_S1.7400.97
96_N100_K1.7380.97
579_K583_E1.7360.97
600_A801_L1.7350.97
184_S187_K1.7240.97
378_L667_S1.7190.97
785_P831_K1.7050.97
797_E800_E1.6990.96
371_I667_S1.6950.96
831_K932_Q1.6890.96
384_Y618_T1.6790.96
788_L834_I1.6710.96
583_E586_A1.6650.96
302_N314_R1.6590.96
494_E504_E1.6440.96
373_A620_Q1.6440.96
922_E931_E1.6430.96
33_D36_S1.6400.96
896_S900_T1.6380.96
512_K516_K1.6300.96
234_S443_V1.6290.96
605_F761_Y1.6280.95
470_E473_T1.6260.95
635_H642_E1.6250.95
617_L685_L1.6250.95
123_I136_I1.6240.95
837_S852_I1.6200.95
568_W574_V1.6170.95
814_G841_N1.6150.95
552_S804_S1.6120.95
332_E375_T1.6060.95
582_L634_L1.6040.95
855_I866_V1.6040.95
632_L658_V1.6000.95
572_F634_L1.5920.95
485_H491_I1.5920.95
793_N838_D1.5910.95
173_K448_T1.5780.95
42_K46_D1.5730.95
230_I358_I1.5590.94
223_L392_I1.5570.94
302_N714_Q1.5560.94
761_Y764_I1.5540.94
188_L433_E1.5480.94
223_L360_I1.5480.94
430_D485_H1.5480.94
632_L656_F1.5420.94
223_L254_V1.5290.94
583_E587_K1.5210.94
650_S653_S1.5190.93
377_N662_P1.5070.93
78_A124_P1.5050.93
553_I557_V1.5000.93
853_A869_L1.4970.93
369_E696_A1.4940.93
229_D440_K1.4890.93
587_K592_D1.4870.93
98_L478_L1.4810.93
552_S802_S1.4800.93
558_L798_V1.4780.92
563_G586_A1.4780.92
134_K141_E1.4740.92
900_T908_S1.4740.92
731_P919_S1.4730.92
912_I938_D1.4700.92
721_L784_T1.4670.92
364_A407_S1.4660.92
26_L29_Q1.4640.92
373_A419_G1.4570.92
636_D639_T1.4550.92
606_A610_K1.4510.92
376_L420_Y1.4480.92
189_S506_V1.4430.92
727_E787_S1.4420.92
472_S483_R1.4340.91
264_E521_A1.4320.91
378_L386_V1.4290.91
797_E801_L1.4260.91
754_N884_E1.4250.91
745_A859_Y1.4150.91
810_Y813_S1.4080.91
666_G699_V1.4060.90
589_F599_L1.4040.90
811_E873_L1.4020.90
162_H421_E1.4000.90
144_Q148_N1.4000.90
209_F271_Q1.4000.90
588_A599_L1.3960.90
497_V503_T1.3920.90
110_L120_I1.3830.90
561_L610_K1.3810.90
191_V436_L1.3800.90
727_E831_K1.3780.90
845_D937_S1.3750.89
359_L391_H1.3720.89
793_N837_S1.3710.89
887_Q897_P1.3700.89
936_V940_L1.3700.89
929_K933_E1.3670.89
827_L855_I1.3650.89
160_H424_I1.3620.89
673_Y708_G1.3580.89
92_N147_R1.3540.89
602_S605_F1.3490.89
437_S441_F1.3480.89
223_L457_L1.3460.88
669_L694_A1.3450.88
607_S762_F1.3430.88
622_S658_V1.3390.88
563_G590_D1.3390.88
481_A484_K1.3340.88
614_P682_T1.3300.88
194_R197_E1.3270.88
344_Q352_E1.3270.88
869_L873_L1.3200.87
141_E144_Q1.3190.87
225_P436_L1.3190.87
555_F799_Q1.3180.87
111_S117_E1.3160.87
222_A435_C1.3150.87
403_E660_N1.3140.87
206_H216_S1.3110.87
825_L853_A1.3110.87
74_K115_L1.3050.87
633_V644_V1.3030.87
429_A457_L1.3030.87
392_I457_L1.2940.86
201_F266_I1.2920.86
858_L891_A1.2910.86
237_S443_V1.2900.86
74_K119_E1.2880.86
563_G567_N1.2860.86
342_R355_S1.2850.86
822_V873_L1.2810.86
706_S744_L1.2800.86
882_V939_S1.2760.86
331_V359_L1.2710.85
240_T311_K1.2680.85
754_N829_S1.2680.85
422_I454_L1.2660.85
595_V797_E1.2650.85
153_T434_A1.2620.85
220_L429_A1.2590.85
197_E517_R1.2480.84
828_S852_I1.2480.84
230_I439_V1.2460.84
833_S837_S1.2460.84
826_V880_V1.2450.84
831_K884_E1.2440.84
755_L760_Q1.2410.84
613_T770_K1.2380.84
595_V599_L1.2350.84
261_K269_E1.2330.84
516_K520_D1.2330.84
694_A701_F1.2300.83
887_Q916_R1.2290.83
847_K850_L1.2280.83
306_Q312_S1.2270.83
123_I138_N1.2250.83
828_S833_S1.2200.83
927_V931_E1.2160.83
758_A834_I1.2160.83
852_I882_V1.2090.82
304_E312_S1.2090.82
117_E140_L1.2070.82
577_K628_A1.2070.82
372_V620_Q1.2030.82
218_E463_Y1.2010.82
497_V505_E1.1980.82
876_L879_I1.1950.82
194_R228_D1.1850.81
188_L495_K1.1850.81
497_V507_V1.1840.81
137_S141_E1.1820.81
220_L394_A1.1790.81
759_A807_Q1.1780.81
598_S629_Q1.1720.80
190_A228_D1.1710.80
707_A731_P1.1700.80
573_N636_D1.1630.80
791_N795_V1.1590.80
837_S841_N1.1590.80
234_S356_L1.1550.79
199_E490_Q1.1520.79
359_L389_A1.1490.79
827_L899_L1.1480.79
107_L113_Y1.1450.79
643_F648_H1.1440.79
683_L719_V1.1440.79
239_T356_L1.1420.79
489_K507_V1.1410.78
383_G618_T1.1390.78
829_S891_A1.1370.78
314_R714_Q1.1370.78
31_T49_G1.1350.78
263_Y514_V1.1340.78
201_F256_A1.1310.78
595_V801_L1.1270.78
609_L656_F1.1270.78
666_G696_A1.1240.77
381_L662_P1.1230.77
329_P371_I1.1200.77
746_A859_Y1.1180.77
824_R850_L1.1160.77
191_V433_E1.1130.77
237_S444_E1.1110.77
617_L622_S1.1100.76
110_L114_G1.1090.76
383_G659_H1.1090.76
935_I938_D1.1090.76
247_A326_F1.1080.76
727_E785_P1.1070.76
551_T767_R1.1040.76
726_Y886_P1.1030.76
234_S447_K1.1020.76
801_L804_S1.1000.76
124_P142_A1.1000.76
192_L502_V1.1000.76
462_R487_T1.0950.75
425_V441_F1.0940.75
83_E87_T1.0880.75
540_E777_I1.0870.75
227_L457_L1.0870.75
623_E633_V1.0830.75
703_Q732_E1.0820.75
358_I439_V1.0740.74
820_E875_N1.0720.74
710_A747_E1.0700.74
183_N191_V1.0690.74
502_V507_V1.0670.74
726_Y734_S1.0660.74
560_K564_E1.0650.73
96_N424_I1.0630.73
887_Q911_Y1.0630.73
242_V358_I1.0630.73
584_R587_K1.0610.73
198_V217_I1.0600.73
589_F595_V1.0600.73
270_F296_K1.0570.73
922_E927_V1.0570.73
231_I242_V1.0560.73
555_F802_S1.0530.73
566_I586_A1.0530.73
810_Y853_A1.0510.72
335_T339_Q1.0440.72
344_Q351_D1.0430.72
721_L761_Y1.0420.72
497_V504_E1.0410.72
384_Y671_F1.0400.72
827_L879_I1.0390.72
629_Q784_T1.0380.71
564_E567_N1.0330.71
812_Q837_S1.0330.71
416_L620_Q1.0320.71
245_G327_I1.0300.71
224_V258_V1.0260.71
839_H937_S1.0260.71
480_D484_K1.0230.70
486_P491_I1.0230.70
120_I140_L1.0230.70
328_N670_G1.0190.70
887_Q913_G1.0180.70
812_Q817_H1.0180.70
917_R920_P1.0150.70
170_L438_A1.0140.70
439_V455_I1.0130.70
487_T490_Q1.0120.70
340_E675_Y1.0100.69
549_V770_K1.0080.69
800_E829_S1.0070.69
256_A263_Y1.0070.69
851_H873_L1.0040.69
717_G777_I1.0040.69
879_I899_L1.0030.69
185_A506_V1.0020.69
808_P857_Q1.0020.69
81_L143_I1.0000.69
747_E894_Y1.0000.69
598_S810_Y1.0000.69
823_T847_K0.9990.69
212_Q216_S0.9980.68
340_E657_A0.9970.68
164_F168_E0.9970.68
761_Y782_I0.9970.68
559_R590_D0.9930.68
540_E717_G0.9930.68
667_S696_A0.9910.68
259_L315_I0.9900.68
444_E448_T0.9900.68
882_V912_I0.9900.68
540_E680_P0.9870.68
369_E664_S0.9860.67
39_P43_E0.9850.67
858_L895_I0.9840.67
493_A507_V0.9840.67
558_L603_L0.9840.67
727_E932_Q0.9840.67
620_Q718_L0.9830.67
690_Y729_Q0.9800.67
819_Y874_P0.9770.67
30_Y42_K0.9760.67
649_L653_S0.9750.67
377_N419_G0.9730.66
29_Q38_D0.9710.66
741_F745_A0.9710.66
926_T929_K0.9710.66
811_E872_K0.9680.66
831_K835_D0.9660.66
373_A377_N0.9660.66
600_A761_Y0.9650.66
880_V910_Q0.9640.66
629_Q761_Y0.9630.66
229_D436_L0.9630.66
236_K309_E0.9620.66
685_L784_T0.9620.66
726_Y928_H0.9620.66
669_L705_I0.9610.65
139_G142_A0.9610.65
755_L782_I0.9590.65
825_L879_I0.9570.65
572_F582_L0.9560.65
460_Y487_T0.9560.65
727_E746_A0.9550.65
721_L785_P0.9550.65
895_I899_L0.9550.65
677_V716_S0.9540.65
27_Y31_T0.9520.65
170_L174_I0.9510.65
605_F629_Q0.9480.64
445_Y451_K0.9450.64
588_A591_D0.9440.64
827_L870_F0.9430.64
820_E874_P0.9430.64
497_V502_V0.9430.64
243_N335_T0.9400.64
314_R540_E0.9400.64
211_G746_A0.9390.64
222_A488_V0.9360.63
587_K590_D0.9350.63
410_T419_G0.9340.63
787_S932_Q0.9320.63
342_R354_K0.9300.63
190_A232_A0.9300.63
600_A794_T0.9290.63
443_V447_K0.9290.63
554_D803_E0.9280.63
679_S682_T0.9280.63
757_S834_I0.9270.63
505_E509_N0.9270.63
335_T355_S0.9260.63
192_L196_T0.9230.62
912_I935_I0.9230.62
376_L454_L0.9210.62
685_L761_Y0.9200.62
876_L907_V0.9190.62
867_K871_A0.9180.62
858_L894_Y0.9170.62
550_D805_R0.9140.62
393_I454_L0.9130.61
839_H936_V0.9130.61
726_Y889_M0.9130.61
865_G868_E0.9120.61
392_I439_V0.9100.61
609_L649_L0.9100.61
231_I313_A0.9100.61
523_Q527_S0.9080.61
540_E776_E0.9060.61
558_L801_L0.9060.61
241_S355_S0.9050.61
574_V582_L0.9050.61
861_F902_I0.9050.61
880_V912_I0.9050.61
812_Q840_F0.9030.61
613_T654_T0.9030.61
245_G331_V0.9010.60
39_P42_K0.9000.60
818_D822_V0.8980.60
581_I628_A0.8970.60
557_V560_K0.8960.60
727_E784_T0.8960.60
647_H656_F0.8960.60
623_E635_H0.8960.60
839_H933_E0.8940.60
799_Q803_E0.8930.60
235_V310_T0.8920.60
470_E577_K0.8910.60
556_D559_R0.8900.59
233_Q440_K0.8880.59
694_A744_L0.8870.59
889_M919_S0.8870.59
650_S654_T0.8850.59
554_D802_S0.8840.59
129_C142_A0.8830.59
701_F706_S0.8820.59
610_K649_L0.8810.59
868_E872_K0.8810.59
170_L453_F0.8800.59
26_L38_D0.8800.59
827_L853_A0.8800.59
879_I909_V0.8790.59
77_S80_R0.8790.59
468_M577_K0.8760.58
787_S791_N0.8730.58
809_V869_L0.8720.58
328_N389_A0.8710.58
758_A791_N0.8710.58
264_E524_K0.8700.58
33_D37_I0.8690.58
517_R521_A0.8690.58
554_D557_V0.8670.57
910_Q938_D0.8670.57
608_I611_D0.8650.57
577_K596_E0.8600.57
847_K940_L0.8600.57
359_L670_G0.8600.57
470_E483_R0.8590.57
206_H212_Q0.8580.57
386_V389_A0.8570.57
895_I898_Y0.8570.57
903_A909_V0.8530.56
580_R584_R0.8520.56
835_D932_Q0.8520.56
292_T747_E0.8490.56
565_L602_S0.8460.56
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35_N39_P0.5440.30
559_R798_V0.5440.30
22_Y29_Q0.5440.30
835_D935_I0.5440.30
25_E29_Q0.5440.30
758_A796_S0.5440.30
393_I422_I0.5430.29
254_V360_I0.5430.29
928_H935_I0.5430.29
402_T428_N0.5430.29
755_L889_M0.5430.29
564_E648_H0.5420.29
579_K898_Y0.5420.29
67_V71_L0.5420.29
158_F164_F0.5420.29
185_A512_K0.5410.29
184_S390_I0.5410.29
393_I545_G0.5410.29
238_G824_R0.5400.29
215_F296_K0.5400.29
193_E407_S0.5400.29
118_E667_S0.5400.29
705_I718_L0.5400.29
867_K899_L0.5400.29
394_A751_T0.5400.29
152_R861_F0.5390.29
799_Q866_V0.5390.29
618_T622_S0.5380.29
313_A497_V0.5380.29
229_D441_F0.5380.29
911_Y915_R0.5380.29
203_Q559_R0.5370.29
741_F814_G0.5370.29
394_A429_A0.5360.29
74_K122_A0.5360.29
75_I124_P0.5360.29
560_K651_D0.5360.29
574_V578_L0.5360.29
677_V708_G0.5350.29
367_P373_A0.5350.29
126_S228_D0.5350.29
609_L653_S0.5350.29
20_L152_R0.5350.29
559_R592_D0.5350.29
827_L858_L0.5340.29
647_H653_S0.5340.29
18_P23_A0.5330.29
354_K820_E0.5330.29
95_V100_K0.5330.29
239_T386_V0.5330.29
559_R606_A0.5330.29
618_T667_S0.5330.29
495_K498_K0.5330.29
371_I700_Y0.5320.29
822_V825_L0.5320.29
332_E684_V0.5320.29
96_N454_L0.5320.29
371_I669_L0.5320.29
376_L441_F0.5310.29
157_E747_E0.5310.29
546_F549_V0.5310.29
485_H488_V0.5310.29
670_G889_M0.5310.29
819_Y869_L0.5300.29
142_A146_L0.5300.29
116_T122_A0.5300.29
95_V98_L0.5300.29
86_R673_Y0.5300.29
756_T778_R0.5290.28
155_S412_Y0.5290.28
578_L754_N0.5290.28
828_S881_W0.5280.28
410_T913_G0.5280.28
823_T874_P0.5280.28
170_L377_N0.5280.28
96_N472_S0.5280.28
470_E791_N0.5280.28
751_T776_E0.5280.28
672_E829_S0.5280.28
609_L646_L0.5270.28
402_T622_S0.5270.28
66_R69_A0.5260.28
47_E51_P0.5260.28
707_A828_S0.5260.28
457_L528_K0.5260.28
71_L122_A0.5260.28
759_A762_F0.5250.28
87_T162_H0.5250.28
608_I613_T0.5250.28
878_E903_A0.5240.28
577_K581_I0.5240.28
414_S420_Y0.5240.28
155_S700_Y0.5240.28
377_N409_S0.5230.28
235_V309_E0.5230.28
565_L572_F0.5230.28
128_I139_G0.5230.28
232_A309_E0.5230.28
30_Y639_T0.5220.28
450_N919_S0.5220.28
502_V510_I0.5220.28
800_E838_D0.5220.28
572_F642_E0.5220.28
65_G69_A0.5220.28
96_N108_F0.5210.28
756_T760_Q0.5210.28
335_T344_Q0.5210.28
206_H210_V0.5200.28
381_L473_T0.5200.28
883_Q888_N0.5190.28
554_D611_D0.5190.28
342_R635_H0.5190.28
28_D39_P0.5190.28
189_S598_S0.5180.28
239_T855_I0.5180.28
817_H822_V0.5180.28
339_Q344_Q0.5180.28
225_P231_I0.5180.28
67_V424_I0.5180.28
799_Q802_S0.5170.28
870_F879_I0.5170.28
832_V936_V0.5170.28
195_L782_I0.5170.28
477_M480_D0.5170.28
360_I445_Y0.5170.28
603_L756_T0.5160.27
864_K868_E0.5160.27
635_H644_V0.5160.27
211_G468_M0.5150.27
187_K232_A0.5150.27
358_I491_I0.5150.27
81_L85_I0.5150.27
316_T596_E0.5150.27
228_D232_A0.5140.27
451_K741_F0.5140.27
222_A607_S0.5140.27
694_A736_G0.5140.27
190_A308_A0.5140.27
340_E655_S0.5140.27
384_Y452_D0.5140.27
329_P700_Y0.5140.27
343_T822_V0.5130.27
913_G938_D0.5130.27
738_I752_V0.5130.27
838_D853_A0.5130.27
493_A511_E0.5130.27
512_K629_Q0.5120.27
221_D226_V0.5120.27
257_H263_Y0.5110.27
326_F393_I0.5110.27
814_G837_S0.5110.27
653_S917_R0.5100.27
29_Q37_I0.5100.27
393_I805_R0.5100.27
29_Q634_L0.5090.27
681_E807_Q0.5090.27
628_A794_T0.5090.27
183_N437_S0.5090.27
93_A96_N0.5090.27
366_F416_L0.5080.27
552_S607_S0.5080.27
615_I656_F0.5070.27
113_Y741_F0.5070.27
664_S696_A0.5070.27
213_K690_Y0.5060.27
227_L358_I0.5060.27
83_E128_I0.5060.27
36_S554_D0.5050.27
699_V738_I0.5050.27
116_T880_V0.5050.27
190_A826_V0.5050.27
480_D483_R0.5050.27
392_I736_G0.5050.27
119_E198_V0.5050.27
562_N758_A0.5040.27
339_Q404_S0.5040.27
46_D50_A0.5040.27
196_T200_G0.5040.27
187_K526_P0.5040.27
26_L234_S0.5030.27
622_S667_S0.5030.27
810_Y872_K0.5030.27
239_T868_E0.5020.26
881_W884_E0.5020.26
51_P64_K0.5020.26
623_E659_H0.5020.26
505_E508_Q0.5020.26
811_E822_V0.5020.26
783_M829_S0.5020.26
305_L309_E0.5010.26
31_T448_T0.5010.26
81_L726_Y0.5010.26
59_S144_Q0.5010.26
227_L875_N0.5000.26
884_E936_V0.5000.26
83_E164_F0.5000.26
201_F515_T0.5000.26
326_F371_I0.5000.26
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jgdA 2 0.8644 100 0.428 Contact Map
2xt6A 2 0.9333 100 0.438 Contact Map
2yicA 2 0.8496 100 0.444 Contact Map
1itzA 2 0.6684 100 0.853 Contact Map
3komA 2 0.6356 100 0.857 Contact Map
3l84A 2 0.625 100 0.858 Contact Map
4c7vA 2 0.6557 100 0.859 Contact Map
3uk1A 2 0.6398 100 0.86 Contact Map
3rimA 2 0.6716 100 0.863 Contact Map
2r8oA 2 0.6494 100 0.864 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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