SYY1 - BACSU - GREMLIN Contacts

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SYY1 - Tyrosine--tRNA ligase 1

UniProt:	P22326	Sequences: MTNLLEDLSFRGLIQQMTDEEGLNKQLNEEKIRLYSGFDPTADSLHIGHLLPILTLRRFQLAGHHPIALVGGATGLIGDPSGKKAERTLNTADIVSEWSQKIKNQLSRFLDFEAAENPAVIANNFDWIGKMNVIDFLRDVGKNFGINYMLAKDTVSSRIESGISYTEFSYMILQSYDFLNLYRDKNCKLQIGGSDQWGNITAGLELIRKSEEEGAKAFGLTIPLVTKADGTKFGKTEGGAIWLDKEKTSPYEFYQFWINTDDRDVVKYLKYFTFLSKEEIEAYAEKTETAPEKREAQKRLAEEVTSLVHGREALEQAINISQALFSGNIKELSAQDVKVGFKDVPSMEVDSTQELSLVDVLVQSKLSPSKRQAREDIQNGAVYINGERQTEINYTLSGEDRIENQFTVLRRGKKKYFLVTYK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	422 (386)
Sequences:	3938 (2124)
Seq/√Len:	108.1

ECOLI - SYY
BACSU - SYY1 SYY2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
311_R	315_E	4.074	1.00
180_N	184_D	3.823	1.00
359_D	370_K	3.331	1.00
306_S	311_R	3.300	1.00
132_N	135_D	3.271	1.00
302_E	318_I	3.200	1.00
83_K	237_E	3.126	1.00
383_Y	410_R	3.000	1.00
122_A	126_D	2.961	1.00
65_H	120_V	2.855	1.00
207_I	217_A	2.834	1.00
266_V	284_A	2.802	1.00
200_I	219_G	2.776	1.00
40_P	75_G	2.556	1.00
226_T	267_K	2.542	1.00
9_S	20_E	2.494	1.00
57_R	61_L	2.472	1.00
33_R	65_H	2.454	1.00
310_G	313_A	2.408	1.00
100_Q	103_K	2.400	1.00
179_L	210_S	2.376	1.00
313_A	316_Q	2.256	1.00
285_E	289_T	2.229	1.00
25_K	29_E	2.183	1.00
356_S	359_D	2.174	1.00
19_D	22_G	2.169	1.00
182_Y	215_A	2.145	1.00
380_G	388_R	2.142	1.00
183_R	211_E	2.117	1.00
112_F	119_A	2.094	1.00
266_V	270_K	2.079	1.00
156_S	160_E	2.061	1.00
348_E	420_T	2.006	1.00
91_T	94_I	1.970	1.00
179_L	183_R	1.962	1.00
306_S	314_L	1.953	1.00
36_S	52_P	1.946	1.00
367_S	373_A	1.944	1.00
383_Y	388_R	1.916	1.00
53_I	106_L	1.910	1.00
279_E	282_A	1.906	1.00
34_L	59_F	1.895	1.00
96_S	100_Q	1.888	1.00
97_E	101_K	1.882	1.00
362_V	370_K	1.879	1.00
368_P	372_Q	1.874	1.00
378_Q	392_I	1.860	1.00
103_K	107_S	1.854	1.00
73_A	128_I	1.848	1.00
97_E	100_Q	1.815	1.00
270_K	284_A	1.810	1.00
298_K	322_Q	1.807	1.00
22_G	27_L	1.793	1.00
22_G	26_Q	1.774	1.00
361_L	382_V	1.765	1.00
360_V	419_V	1.763	1.00
34_L	56_L	1.742	1.00
92_A	96_S	1.726	1.00
302_E	314_L	1.725	1.00
282_A	286_K	1.720	1.00
143_N	209_K	1.718	1.00
10_F	277_K	1.716	1.00
26_Q	32_I	1.706	1.00
33_R	67_I	1.696	1.00
227_K	231_T	1.681	1.00
76_L	92_A	1.663	1.00
128_I	131_M	1.663	1.00
69_L	181_L	1.644	1.00
318_I	322_Q	1.616	1.00
284_A	288_E	1.614	1.00
302_E	315_E	1.611	1.00
281_E	284_A	1.605	1.00
282_A	285_E	1.598	1.00
372_Q	376_D	1.595	1.00
99_S	123_N	1.590	1.00
366_L	417_F	1.584	1.00
360_V	396_L	1.584	1.00
277_K	281_E	1.583	1.00
371_R	375_E	1.583	1.00
94_I	97_E	1.575	1.00
175_S	202_A	1.572	1.00
376_D	381_A	1.563	1.00
144_F	202_A	1.562	1.00
125_F	129_G	1.535	1.00
276_S	279_E	1.523	1.00
90_N	94_I	1.519	1.00
18_T	219_G	1.511	1.00
299_R	303_E	1.495	1.00
52_P	222_I	1.495	1.00
290_A	293_K	1.489	1.00
85_A	88_T	1.487	1.00
67_I	122_A	1.487	1.00
253_F	304_V	1.480	1.00
295_E	298_K	1.472	1.00
264_D	267_K	1.463	1.00
36_S	191_I	1.462	1.00
38_F	53_I	1.461	1.00
205_E	208_R	1.449	1.00
354_E	395_T	1.449	1.00
38_F	45_L	1.448	1.00
182_Y	211_E	1.435	1.00
254_Y	318_I	1.432	1.00
253_F	305_T	1.427	1.00
23_L	26_Q	1.424	1.00
72_G	123_N	1.423	1.00
376_D	411_R	1.419	1.00
122_A	181_L	1.406	1.00
410_R	416_Y	1.397	1.00
376_D	379_N	1.397	1.00
375_E	379_N	1.396	1.00
231_T	237_E	1.387	1.00
315_E	319_N	1.387	1.00
38_F	52_P	1.380	1.00
367_S	376_D	1.365	1.00
7_D	10_F	1.363	1.00
313_A	317_A	1.360	1.00
90_N	98_W	1.352	1.00
356_S	370_K	1.339	1.00
261_D	264_D	1.329	0.99
275_L	299_R	1.328	0.99
372_Q	375_E	1.315	0.99
312_E	316_Q	1.313	0.99
145_G	162_G	1.311	0.99
47_I	257_W	1.310	0.99
21_E	25_K	1.308	0.99
275_L	303_E	1.291	0.99
357_L	389_Q	1.284	0.99
294_R	298_K	1.281	0.99
362_V	367_S	1.278	0.99
67_I	120_V	1.269	0.99
266_V	287_T	1.263	0.99
286_K	295_E	1.263	0.99
72_G	125_F	1.254	0.99
59_F	189_L	1.251	0.99
179_L	207_I	1.234	0.99
245_K	250_P	1.232	0.99
279_E	299_R	1.224	0.99
382_V	411_R	1.214	0.99
56_L	59_F	1.212	0.99
68_A	106_L	1.208	0.99
241_I	257_W	1.207	0.99
285_E	288_E	1.196	0.99
100_Q	104_N	1.192	0.99
353_Q	363_Q	1.192	0.99
357_L	394_Y	1.185	0.99
314_L	321_S	1.184	0.99
133_V	136_F	1.181	0.99
358_V	370_K	1.170	0.99
179_L	211_E	1.166	0.99
286_K	290_A	1.163	0.99
182_Y	214_G	1.162	0.99
148_Y	151_A	1.158	0.99
298_K	318_I	1.154	0.99
227_K	239_G	1.148	0.98
43_D	97_E	1.144	0.98
358_V	377_I	1.140	0.98
104_N	244_D	1.137	0.98
303_E	306_S	1.136	0.98
152_K	201_T	1.135	0.98
275_L	279_E	1.134	0.98
26_Q	29_E	1.129	0.98
380_G	390_T	1.126	0.98
384_I	407_T	1.122	0.98
253_F	257_W	1.121	0.98
315_E	318_I	1.116	0.98
111_D	114_A	1.114	0.98
266_V	281_E	1.114	0.98
123_N	126_D	1.102	0.98
302_E	306_S	1.095	0.98
347_M	417_F	1.094	0.98
319_N	322_Q	1.090	0.98
278_E	281_E	1.090	0.98
250_P	309_H	1.086	0.98
133_V	173_L	1.086	0.98
14_I	17_M	1.080	0.98
128_I	173_L	1.074	0.98
26_Q	30_E	1.070	0.98
364_S	417_F	1.069	0.98
359_D	363_Q	1.069	0.98
281_E	285_E	1.068	0.98
153_D	157_S	1.067	0.98
180_N	183_R	1.066	0.98
54_L	307_L	1.057	0.97
16_Q	19_D	1.046	0.97
128_I	176_Y	1.043	0.97
157_S	161_S	1.039	0.97
357_L	377_I	1.037	0.97
270_K	277_K	1.035	0.97
280_I	284_A	1.025	0.97
55_T	222_I	1.023	0.97
27_L	32_I	1.016	0.97
255_Q	259_N	1.014	0.97
350_D	353_Q	1.013	0.97
355_L	363_Q	1.007	0.97
375_E	381_A	1.003	0.96
9_S	24_N	1.000	0.96
7_D	58_R	0.998	0.96
23_L	27_L	0.996	0.96
355_L	360_V	0.995	0.96
49_H	52_P	0.991	0.96
298_K	302_E	0.989	0.96
20_E	24_N	0.985	0.96
251_Y	320_I	0.985	0.96
16_Q	221_T	0.985	0.96
396_L	407_T	0.981	0.96
211_E	215_A	0.980	0.96
314_L	318_I	0.974	0.96
54_L	274_F	0.972	0.96
136_F	172_I	0.972	0.96
15_Q	194_S	0.968	0.96
245_K	313_A	0.968	0.96
233_F	256_F	0.960	0.95
319_N	323_A	0.960	0.95
67_I	181_L	0.953	0.95
269_L	300_L	0.947	0.95
133_V	169_S	0.940	0.95
269_L	283_Y	0.939	0.95
391_E	394_Y	0.936	0.95
189_L	220_L	0.935	0.95
149_M	168_F	0.934	0.95
312_E	315_E	0.932	0.95
253_F	308_V	0.927	0.94
179_L	206_L	0.926	0.94
411_R	415_K	0.925	0.94
316_Q	319_N	0.924	0.94
51_L	225_V	0.922	0.94
357_L	382_V	0.915	0.94
92_A	129_G	0.914	0.94
58_R	62_A	0.913	0.94
270_K	280_I	0.913	0.94
131_M	176_Y	0.911	0.94
249_S	252_E	0.909	0.94
368_P	415_K	0.904	0.94
143_N	210_S	0.900	0.94
341_F	344_V	0.900	0.94
320_I	323_A	0.899	0.94
107_S	119_A	0.896	0.93
57_R	274_F	0.893	0.93
53_I	109_F	0.892	0.93
140_V	176_Y	0.889	0.93
200_I	221_T	0.889	0.93
81_S	163_I	0.889	0.93
346_S	420_T	0.884	0.93
33_R	120_V	0.884	0.93
252_E	255_Q	0.883	0.93
405_Q	420_T	0.883	0.93
43_D	49_H	0.881	0.93
299_R	302_E	0.879	0.93
295_E	299_R	0.874	0.93
265_V	292_E	0.873	0.93
13_L	271_Y	0.872	0.92
13_L	58_R	0.870	0.92
42_A	49_H	0.866	0.92
241_I	256_F	0.863	0.92
344_V	408_V	0.863	0.92
225_V	272_F	0.861	0.92
36_S	49_H	0.860	0.92
273_T	303_E	0.858	0.92
32_I	64_H	0.855	0.92
273_T	304_V	0.854	0.92
69_L	122_A	0.854	0.92
389_Q	394_Y	0.854	0.92
150_L	159_I	0.853	0.92
361_L	409_L	0.848	0.91
137_L	173_L	0.841	0.91
83_K	236_T	0.840	0.91
367_S	382_V	0.839	0.91
283_Y	287_T	0.837	0.91
257_W	272_F	0.832	0.91
367_S	372_Q	0.832	0.91
255_Q	325_F	0.831	0.91
254_Y	298_K	0.831	0.91
302_E	311_R	0.831	0.91
313_A	321_S	0.827	0.90
145_G	164_S	0.823	0.90
259_N	414_K	0.820	0.90
58_R	61_L	0.814	0.90
320_I	324_L	0.810	0.89
269_L	299_R	0.810	0.89
396_L	419_V	0.810	0.89
293_K	297_Q	0.809	0.89
227_K	238_G	0.807	0.89
179_L	217_A	0.807	0.89
323_A	327_G	0.807	0.89
137_L	169_S	0.806	0.89
100_Q	107_S	0.805	0.89
32_I	189_L	0.804	0.89
60_Q	119_A	0.803	0.89
31_K	64_H	0.802	0.89
283_Y	299_R	0.802	0.89
362_V	373_A	0.801	0.89
10_F	281_E	0.801	0.89
183_R	210_S	0.800	0.89
111_D	119_A	0.797	0.89
258_I	294_R	0.795	0.89
103_K	121_I	0.794	0.88
17_M	20_E	0.794	0.88
22_G	25_K	0.792	0.88
255_Q	321_S	0.792	0.88
291_P	294_R	0.786	0.88
42_A	238_G	0.786	0.88
356_S	393_N	0.783	0.88
53_I	110_L	0.783	0.88
38_F	68_A	0.781	0.88
131_M	140_V	0.780	0.88
254_Y	258_I	0.779	0.88
384_I	409_L	0.776	0.87
408_V	418_L	0.776	0.87
104_N	107_S	0.776	0.87
55_T	191_I	0.775	0.87
284_A	287_T	0.773	0.87
34_L	189_L	0.773	0.87
40_P	99_S	0.772	0.87
242_W	245_K	0.765	0.87
107_S	121_I	0.764	0.86
254_Y	302_E	0.763	0.86
148_Y	152_K	0.759	0.86
386_G	410_R	0.759	0.86
17_M	23_L	0.754	0.86
43_D	101_K	0.753	0.86
380_G	383_Y	0.751	0.86
103_K	112_F	0.748	0.85
96_S	99_S	0.747	0.85
38_F	49_H	0.747	0.85
286_K	291_P	0.743	0.85
81_S	85_A	0.743	0.85
153_D	156_S	0.743	0.85
38_F	42_A	0.743	0.85
228_A	263_R	0.742	0.85
358_V	392_I	0.741	0.85
13_L	54_L	0.738	0.85
294_R	297_Q	0.735	0.84
56_L	68_A	0.735	0.84
286_K	289_T	0.733	0.84
106_L	121_I	0.730	0.84
211_E	214_G	0.729	0.84
274_F	303_E	0.729	0.84
358_V	374_R	0.728	0.84
306_S	312_E	0.727	0.84
142_K	166_T	0.726	0.84
138_R	143_N	0.723	0.83
155_V	171_M	0.723	0.83
254_Y	321_S	0.723	0.83
22_G	216_K	0.717	0.83
356_S	377_I	0.714	0.83
270_K	281_E	0.714	0.83
49_H	53_I	0.714	0.83
36_S	45_L	0.711	0.82
377_I	392_I	0.710	0.82
88_T	94_I	0.709	0.82
370_K	374_R	0.707	0.82
60_Q	111_D	0.707	0.82
26_Q	215_A	0.706	0.82
176_Y	180_N	0.706	0.82
134_I	138_R	0.705	0.82
182_Y	207_I	0.705	0.82
141_G	169_S	0.704	0.82
76_L	95_V	0.702	0.81
49_H	236_T	0.702	0.81
273_T	299_R	0.700	0.81
322_Q	326_S	0.700	0.81
340_G	343_D	0.698	0.81
265_V	296_A	0.698	0.81
51_L	271_Y	0.694	0.81
34_L	191_I	0.694	0.81
128_I	133_V	0.693	0.81
107_S	112_F	0.692	0.81
277_K	280_I	0.691	0.80
109_F	253_F	0.691	0.80
13_L	220_L	0.691	0.80
357_L	361_L	0.687	0.80
292_E	296_A	0.686	0.80
47_I	256_F	0.683	0.80
365_K	368_P	0.682	0.80
23_L	189_L	0.681	0.80
229_D	261_D	0.681	0.80
237_E	240_A	0.681	0.80
82_G	154_T	0.680	0.79
144_F	172_I	0.680	0.79
105_Q	244_D	0.679	0.79
224_L	237_E	0.677	0.79
89_L	166_T	0.675	0.79
298_K	326_S	0.675	0.79
379_N	411_R	0.674	0.79
406_F	420_T	0.673	0.79
52_P	191_I	0.672	0.79
227_K	256_F	0.668	0.78
318_I	321_S	0.664	0.78
384_I	396_L	0.664	0.78
146_I	163_I	0.663	0.78
374_R	392_I	0.659	0.77
264_D	268_Y	0.658	0.77
145_G	148_Y	0.657	0.77
89_L	138_R	0.655	0.77
50_L	307_L	0.655	0.77
371_R	374_R	0.654	0.77
19_D	26_Q	0.653	0.77
202_A	205_E	0.652	0.77
31_K	65_H	0.652	0.77
50_L	272_F	0.650	0.76
231_T	236_T	0.649	0.76
15_Q	197_W	0.649	0.76
148_Y	205_E	0.647	0.76
47_I	227_K	0.647	0.76
165_Y	169_S	0.646	0.76
176_Y	210_S	0.644	0.76
95_V	98_W	0.644	0.76
260_T	268_Y	0.643	0.76
227_K	268_Y	0.643	0.76
47_I	304_V	0.643	0.76
144_F	175_S	0.643	0.76
28_N	31_K	0.643	0.76
253_F	309_H	0.640	0.75
15_Q	19_D	0.639	0.75
255_Q	414_K	0.639	0.75
85_A	237_E	0.636	0.75
359_D	362_V	0.636	0.75
377_I	382_V	0.634	0.74
146_I	168_F	0.632	0.74
197_W	221_T	0.632	0.74
321_S	414_K	0.631	0.74
149_M	171_M	0.629	0.74
47_I	109_F	0.627	0.74
205_E	209_K	0.627	0.74
154_T	171_M	0.626	0.74
269_L	296_A	0.626	0.74
259_N	325_F	0.624	0.73
54_L	58_R	0.622	0.73
245_K	249_S	0.621	0.73
86_E	142_K	0.621	0.73
225_V	256_F	0.619	0.73
149_M	165_Y	0.619	0.73
81_S	154_T	0.619	0.73
201_T	204_L	0.618	0.73
136_F	173_L	0.618	0.73
58_R	274_F	0.613	0.72
228_A	260_T	0.612	0.72
40_P	46_H	0.612	0.72
286_K	299_R	0.610	0.72
13_L	16_Q	0.610	0.72
283_Y	296_A	0.609	0.72
7_D	62_A	0.609	0.72
83_K	157_S	0.608	0.71
57_R	60_Q	0.608	0.71
76_L	129_G	0.605	0.71
292_E	295_E	0.605	0.71
390_T	394_Y	0.604	0.71
75_G	95_V	0.603	0.71
57_R	106_L	0.602	0.71
265_V	284_A	0.601	0.71
114_A	119_A	0.601	0.71
344_V	416_Y	0.600	0.70
257_W	305_T	0.596	0.70
275_L	283_Y	0.594	0.70
269_L	280_I	0.594	0.70
47_I	271_Y	0.594	0.70
236_T	239_G	0.593	0.70
385_N	407_T	0.592	0.69
361_L	373_A	0.590	0.69
26_Q	218_F	0.590	0.69
376_D	382_V	0.588	0.69
287_T	290_A	0.588	0.69
204_L	217_A	0.588	0.69
149_M	155_V	0.588	0.69
171_M	175_S	0.587	0.69
47_I	253_F	0.586	0.69
381_A	386_G	0.586	0.69
108_R	244_D	0.586	0.69
84_K	88_T	0.585	0.68
10_F	19_D	0.585	0.68
224_L	244_D	0.584	0.68
255_Q	258_I	0.584	0.68
198_G	201_T	0.583	0.68
317_A	321_S	0.583	0.68
76_L	90_N	0.582	0.68
371_R	378_Q	0.581	0.68
16_Q	197_W	0.580	0.68
131_M	135_D	0.578	0.68
228_A	261_D	0.576	0.67
52_P	81_S	0.575	0.67
360_V	407_T	0.574	0.67
175_S	206_L	0.573	0.67
49_H	101_K	0.573	0.67
91_T	95_V	0.572	0.67
51_L	55_T	0.571	0.67
407_T	419_V	0.571	0.67
108_R	245_K	0.571	0.67
354_E	397_S	0.570	0.67
125_F	128_I	0.568	0.66
229_D	239_G	0.568	0.66
320_I	340_G	0.568	0.66
191_I	222_I	0.568	0.66
49_H	222_I	0.567	0.66
323_A	326_S	0.567	0.66
104_N	108_R	0.567	0.66
359_D	393_N	0.566	0.66
368_P	371_R	0.565	0.66
47_I	240_A	0.563	0.66
342_K	345_P	0.562	0.65
25_K	28_N	0.562	0.65
45_L	68_A	0.561	0.65
304_V	308_V	0.561	0.65
68_A	110_L	0.560	0.65
387_E	390_T	0.560	0.65
38_F	106_L	0.558	0.65
306_S	315_E	0.557	0.65
53_I	68_A	0.557	0.65
236_T	253_F	0.556	0.65
367_S	409_L	0.555	0.64
136_F	140_V	0.553	0.64
402_I	405_Q	0.552	0.64
341_F	346_S	0.552	0.64
356_S	395_T	0.551	0.64
251_Y	325_F	0.551	0.64
273_T	307_L	0.551	0.64
83_K	88_T	0.550	0.64
47_I	272_F	0.550	0.64
257_W	268_Y	0.549	0.64
362_V	371_R	0.548	0.63
165_Y	172_I	0.547	0.63
146_I	149_M	0.546	0.63
387_E	394_Y	0.546	0.63
291_P	295_E	0.545	0.63
272_F	307_L	0.543	0.63
326_S	329_I	0.542	0.63
231_T	238_G	0.542	0.63
376_D	415_K	0.541	0.63
49_H	268_Y	0.541	0.63
21_E	24_N	0.539	0.62
151_A	241_I	0.538	0.62
59_F	191_I	0.538	0.62
75_G	99_S	0.538	0.62
9_S	14_I	0.534	0.62
46_H	75_G	0.534	0.62
366_L	411_R	0.534	0.62
49_H	102_I	0.532	0.61
165_Y	168_F	0.531	0.61
86_E	166_T	0.530	0.61
27_L	64_H	0.530	0.61
354_E	398_G	0.529	0.61
323_A	329_I	0.528	0.61
38_F	144_F	0.527	0.61
36_S	53_I	0.527	0.61
373_A	377_I	0.526	0.60
36_S	56_L	0.526	0.60
90_N	95_V	0.525	0.60
272_F	304_V	0.520	0.59
88_T	237_E	0.519	0.59
256_F	260_T	0.519	0.59
18_T	204_L	0.519	0.59
251_Y	321_S	0.518	0.59
41_T	49_H	0.518	0.59
368_P	376_D	0.517	0.59
101_K	104_N	0.517	0.59
7_D	277_K	0.516	0.59
154_T	157_S	0.515	0.59
82_G	237_E	0.515	0.59
386_G	408_V	0.514	0.59
145_G	171_M	0.512	0.58
96_S	123_N	0.512	0.58
266_V	280_I	0.512	0.58
261_D	265_V	0.511	0.58
61_L	274_F	0.511	0.58
75_G	166_T	0.511	0.58
22_G	218_F	0.510	0.58
294_R	325_F	0.510	0.58
40_P	162_G	0.510	0.58
273_T	306_S	0.509	0.58
377_I	381_A	0.509	0.58
109_F	112_F	0.508	0.58
251_Y	255_Q	0.508	0.58
370_K	381_A	0.507	0.58
34_L	52_P	0.507	0.58
130_K	135_D	0.506	0.57
255_Q	320_I	0.506	0.57
92_A	135_D	0.505	0.57
36_S	68_A	0.504	0.57
152_K	202_A	0.503	0.57
106_L	123_N	0.500	0.57

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1jilA	2	0.7607	100	0.248	Contact Map
2ts1A	2	0.7512	100	0.251	Contact Map
4oudA	2	0.9621	100	0.252	Contact Map
2janA	2	0.9858	100	0.256	Contact Map
1h3fA	2	0.8768	100	0.359	Contact Map
1y42X	2	0.7488	100	0.394	Contact Map
2pidA	2	0.7275	100	0.445	Contact Map
2yxnA	2	0.7512	100	0.456	Contact Map
3p0jA	1	0.91	100	0.571	Contact Map
3hv0A	2	0.718	100	0.581	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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