RS19 - BACSU - GREMLIN Contacts

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RS19 - 30S ribosomal protein S19

UniProt:	P21476	Sequences: MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	92 (88)
Sequences:	1978 (770)
Seq/√Len:	82.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
12_D	37_R	4.316	1.00
23_N	47_H	3.913	1.00
30_V	50_A	3.330	1.00
22_L	47_H	3.139	1.00
53_D	56_K	2.817	1.00
39_T	70_K	2.439	1.00
33_T	71_L	2.316	1.00
11_V	41_F	2.131	1.00
49_I	62_I	2.042	1.00
34_W	57_H	2.040	1.00
16_M	20_E	1.826	1.00
20_E	43_Q	1.752	1.00
58_V	75_A	1.670	1.00
84_A	87_D	1.625	1.00
10_F	14_H	1.621	1.00
51_V	62_I	1.604	1.00
72_G	77_T	1.544	1.00
10_F	38_S	1.485	0.99
44_F	49_I	1.470	0.99
51_V	60_V	1.409	0.99
7_K	11_V	1.345	0.99
53_D	75_A	1.340	0.99
35_S	38_S	1.332	0.99
21_K	24_E	1.324	0.98
53_D	58_V	1.297	0.98
22_L	27_K	1.296	0.98
55_R	79_T	1.268	0.98
48_T	59_P	1.256	0.98
4_S	8_G	1.229	0.98
30_V	56_K	1.226	0.98
69_H	73_E	1.223	0.97
4_S	7_K	1.207	0.97
14_H	37_R	1.195	0.97
23_N	27_K	1.175	0.97
41_F	65_D	1.127	0.96
41_F	44_F	1.100	0.95
21_K	25_T	1.048	0.94
17_T	21_K	1.026	0.93
49_I	59_P	1.000	0.92
20_E	24_E	0.982	0.92
56_K	79_T	0.982	0.92
43_Q	64_E	0.975	0.91
50_A	59_P	0.969	0.91
52_Y	65_D	0.948	0.90
10_F	35_S	0.945	0.90
41_F	45_I	0.935	0.89
15_L	71_L	0.918	0.89
69_H	74_F	0.907	0.88
7_K	10_F	0.899	0.88
2_A	7_K	0.884	0.87
52_Y	66_M	0.867	0.86
14_H	35_S	0.867	0.86
32_K	56_K	0.859	0.85
80_Y	85_S	0.857	0.85
15_L	38_S	0.855	0.85
56_K	59_P	0.843	0.84
15_L	33_T	0.832	0.83
28_K	48_T	0.829	0.83
2_A	37_R	0.829	0.83
36_R	54_G	0.824	0.83
8_G	12_D	0.824	0.83
21_K	29_Q	0.804	0.81
16_M	43_Q	0.792	0.80
28_K	47_H	0.791	0.80
68_G	73_E	0.791	0.80
44_F	67_V	0.776	0.79
55_R	58_V	0.776	0.79
48_T	60_V	0.772	0.78
8_G	64_E	0.755	0.77
5_L	41_F	0.743	0.76
13_G	17_T	0.740	0.75
53_D	57_H	0.727	0.74
19_I	47_H	0.723	0.74
44_F	55_R	0.721	0.73
79_T	82_G	0.715	0.73
32_K	39_T	0.709	0.72
16_M	41_F	0.708	0.72
6_K	10_F	0.705	0.72
25_T	84_A	0.692	0.70
65_D	85_S	0.690	0.70
18_K	31_V	0.689	0.70
57_H	75_A	0.679	0.69
27_K	61_F	0.674	0.68
84_A	88_K	0.670	0.68
30_V	59_P	0.664	0.67
23_N	26_D	0.662	0.67
41_F	53_D	0.660	0.67
20_E	25_T	0.656	0.66
21_K	87_D	0.654	0.66
4_S	9_P	0.641	0.64
19_I	49_I	0.638	0.64
22_L	29_Q	0.638	0.64
2_A	70_K	0.638	0.64
27_K	47_H	0.634	0.64
31_V	49_I	0.632	0.63
3_R	36_R	0.632	0.63
12_D	35_S	0.631	0.63
81_K	84_A	0.626	0.63
17_T	32_K	0.618	0.62
2_A	39_T	0.618	0.62
43_Q	57_H	0.616	0.61
24_E	65_D	0.614	0.61
1_M	7_K	0.607	0.60
6_K	49_I	0.606	0.60
19_I	23_N	0.605	0.60
43_Q	65_D	0.598	0.59
69_H	75_A	0.592	0.58
49_I	71_L	0.583	0.57
78_R	85_S	0.581	0.57
69_H	72_G	0.580	0.57
15_L	35_S	0.575	0.56
62_I	71_L	0.567	0.55
24_E	88_K	0.563	0.55
48_T	51_V	0.561	0.54
55_R	88_K	0.558	0.54
63_S	67_V	0.556	0.54
29_Q	59_P	0.545	0.52
53_D	88_K	0.542	0.52
51_V	84_A	0.541	0.52
10_F	13_G	0.538	0.51
16_M	23_N	0.538	0.51
49_I	76_P	0.537	0.51
9_P	12_D	0.532	0.51
6_K	65_D	0.532	0.51
3_R	54_G	0.527	0.50
43_Q	75_A	0.523	0.49
1_M	4_S	0.522	0.49
4_S	76_P	0.517	0.49
31_V	47_H	0.510	0.48
37_R	70_K	0.507	0.47
74_F	78_R	0.506	0.47
50_A	74_F	0.500	0.46

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bbnS	1	1	100	0.033	Contact Map
4kiyS	1	0.8587	100	0.046	Contact Map
3a1pB	1	0.913	100	0.047	Contact Map
3j20T	1	0.913	100	0.106	Contact Map
4tp8S	1	0.8587	100	0.136	Contact Map
4ujpQ	1	0.9022	100	0.146	Contact Map
3zeyI	1	1	100	0.149	Contact Map
4bpeS	1	0.9022	100	0.159	Contact Map
3j7aX	1	0.7391	100	0.161	Contact Map
3j38P	1	0.8696	100	0.189	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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